Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G03301 Eucalyptus grandis HOM05D002214 ORTHO05D007367 1.5e-250 869.0 436 100.0
Eucgr.G03320 Eucalyptus grandis HOM05D002214 ORTHO05D007367 3.0e-246 854.7 439 98.2
Cfa010812 Carpinus fangiana HOM05D002214 ORTHO05D007367 6.2e-159 564.7 431 62.9
CiPaw.14G003400 Carya illinoinensis HOM05D002214 ORTHO05D007367 2.4e-158 562.8 428 63.8
Potri.009G056500 Populus trichocarpa HOM05D002214 ORTHO05D007367 3.1e-158 562.4 426 63.6
Ciclev10031605m.g Citrus clementina HOM05D002214 ORTHO05D007367 2.0e-157 559.7 429 65.3
TWI09G0406 Tripterygium wilfordii HOM05D002214 ORTHO05D007367 4.9e-156 555.1 432 64.8
GSVIVG01032215001 Vitis vinifera HOM05D002214 ORTHO05D007367 8.4e-156 554.3 432 61.8
Manes.07G010800 Manihot esculenta HOM05D002214 ORTHO05D007367 3.0e-153 545.8 432 62.0
RcHm_v2.0_Chr1g0318361 Rosa chinensis HOM05D002214 ORTHO05D007367 6.6e-153 544.7 422 62.3
Rhsim07G0058900 Rhododendron simsii HOM05D002214 ORTHO05D007367 1.5e-152 543.5 432 62.0
Duzib138G1340 Durio zibethinus HOM05D002214 ORTHO05D007367 1.9e-152 543.1 404 64.6
Sc11g0009040 Simmondsia chinensis HOM05D002214 ORTHO05D007367 4.3e-152 542.0 412 62.1
Actinidia19424 Actinidia chinensis HOM05D002214 ORTHO05D007367 7.3e-152 541.2 409 63.6
Thecc.01G406200 Theobroma cacao HOM05D002214 ORTHO05D007367 4.8e-151 538.5 436 61.7
FAN03G2729 Fragaria x ananassa HOM05D002214 ORTHO05D007367 6.2e-151 538.1 419 60.9
FAN10G2270 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.1e-150 535.8 417 60.9
Gohir.A08G142300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 9.0e-150 534.3 404 62.1
CANSAT80G0536 Cannabis sativa HOM05D002214 ORTHO05D007367 2.9e-148 529.3 426 59.4
Gorai.004G170100 Gossypium raimondii HOM05D002214 ORTHO05D007367 4.9e-148 528.5 405 61.2
Hma1.2p1_0685F.1_g203260 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 4.3e-144 515.4 433 58.7
Nn7g36334 Nelumbo nucifera HOM05D002214 ORTHO05D007367 7.4e-144 514.6 400 61.0
PGR031G3638 Punica granatum HOM05D002214 ORTHO05D007367 7.4e-144 514.6 470 57.2
Prupe.2G024000 Prunus persica HOM05D002214 ORTHO05D007367 1.1e-142 510.8 428 58.9
Aqoxy2G00221 Aquilegia oxysepala HOM05D002214 ORTHO05D007367 1.8e-142 510.0 425 57.4
MD07G1023200 Malus domestica HOM05D002214 ORTHO05D007367 6.9e-142 508.1 415 60.2
vmacro13697 Vaccinium macrocarpon HOM05D002214 ORTHO05D007367 2.0e-141 506.5 463 56.8
AUR62023095 Chenopodium quinoa HOM05D002214 ORTHO05D007367 3.8e-140 502.3 415 58.6
THA.LOC104817574 Tarenaya hassleriana HOM05D002214 ORTHO05D007367 3.8e-140 502.3 411 58.9
Lalb_Chr25g0282551 Lupinus albus HOM05D002214 ORTHO05D007367 6.0e-138 495.0 410 60.2
Sp5g10260 Schrenkiella parvula HOM05D002214 ORTHO05D007367 1.3e-135 487.3 409 57.9
Carub.0005s1835 Capsella rubella HOM05D002214 ORTHO05D007367 2.1e-135 486.5 410 56.8
AT3G52030 Arabidopsis thaliana HOM05D002214 ORTHO05D007367 8.2e-135 484.6 413 56.4
Thhalv10010397m.g Eutrema salsugineum HOM05D002214 ORTHO05D007367 1.1e-134 484.2 410 56.8
Lj3g0007976 Lotus japonicus HOM05D002214 ORTHO05D007367 1.4e-134 483.8 411 59.1
Medtr3g034210 Medicago truncatula HOM05D002214 ORTHO05D007367 1.4e-134 483.8 410 58.8
CARHR161660 Cardamine hirsuta HOM05D002214 ORTHO05D007367 2.4e-134 483.0 413 55.9
Glyma.11G159230 Glycine max HOM05D002214 ORTHO05D007367 2.4e-134 483.0 413 58.6
C07p46730 Brassica napus HOM05D002214 ORTHO05D007367 4.0e-134 482.3 409 56.5
QL04p010195 Quercus lobata HOM05D002214 ORTHO05D007367 4.0e-134 482.3 424 57.3
Sed0008197 Sechium edule HOM05D002214 ORTHO05D007367 5.3e-134 481.9 406 57.9
BcaC06g33020 Brassica carinata HOM05D002214 ORTHO05D007367 1.5e-133 480.3 410 56.1
BcaC06g33377 Brassica carinata HOM05D002214 ORTHO05D007367 1.5e-133 480.3 410 56.1
A03p48610 Brassica napus HOM05D002214 ORTHO05D007367 1.5e-133 480.3 410 56.3
CsaV3_7G030710 Cucumis sativus L. HOM05D002214 ORTHO05D007367 5.8e-133 478.4 439 53.8
TAR633G1256 Trochodendron aralioides HOM05D002214 ORTHO05D007367 7.6e-133 478.0 378 61.6
Ca_24837_v3 Cicer arietinum L. HOM05D002214 ORTHO05D007367 2.2e-132 476.5 409 57.7
AL5G32570 Arabidopsis lyrata HOM05D002214 ORTHO05D007367 2.9e-132 476.1 427 54.6
arahy.Tifrunner.gnm1.ann1.IP56PK Arachis hypogaea HOM05D002214 ORTHO05D007367 1.1e-131 474.2 403 58.6
Psat5g212440 Pisum sativum HOM05D002214 ORTHO05D007367 4.2e-131 472.2 405 57.8
arahy.Tifrunner.gnm1.ann1.KRTV89 Arachis hypogaea HOM05D002214 ORTHO05D007367 7.1e-131 471.5 403 58.3
BolC7t45191H Brassica oleracea HOM05D002214 ORTHO05D007367 2.1e-130 469.9 427 54.1
DCAR_022375 Daucus carota HOM05D002214 ORTHO05D007367 3.5e-130 469.2 416 53.6
Atru.chr11.2515 Acer truncatum HOM05D002214 ORTHO05D007367 6.1e-130 468.4 409 58.7
CAN.G909.6 Capsicum annuum HOM05D002214 ORTHO05D007367 6.1e-130 468.4 415 55.4
TPR.G14558 Trifolium pratense HOM05D002214 ORTHO05D007367 5.1e-129 465.3 411 56.4
CSS0000146 Camellia sinensis var. sinensis HOM05D002214 ORTHO05D007367 1.3e-127 460.7 411 56.2
Phvul.005G035100 Phaseolus vulgaris HOM05D002214 ORTHO05D007367 1.3e-127 460.7 409 56.5
Solyc01g087910.4 Solanum lycopersicum HOM05D002214 ORTHO05D007367 1.3e-127 460.7 416 54.1
Sopen01g034840 Solanum pennellii HOM05D002214 ORTHO05D007367 1.6e-127 460.3 416 53.8
VMungo1217G0001 Vigna mungo HOM05D002214 ORTHO05D007367 1.8e-126 456.8 410 55.6
SGA_v2.0_scaffold5G02954 Striga asiatica HOM05D002214 ORTHO05D007367 5.3e-126 455.3 430 52.6
Cc02_g28820 Coffea canephora HOM05D002214 ORTHO05D007367 3.4e-125 452.6 526 45.1
BraA03t13966Z Brassica rapa HOM05D002214 ORTHO05D007367 1.2e-122 444.1 412 53.2
Migut.N01800 Erythranthe guttata HOM05D002214 ORTHO05D007367 2.7e-122 443.0 433 52.2
PSO339G3363 Papaver somniferum HOM05D002214 ORTHO05D007367 4.6e-122 442.2 426 53.8
Gohir.D08G163300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 6.1e-122 441.8 310 66.8
Lsat_1_v5_gn_7_35840 Lactuca sativa HOM05D002214 ORTHO05D007367 7.9e-122 441.4 408 52.0
FvH4_7g01770 Fragaria vesca HOM05D002214 ORTHO05D007367 6.9e-118 428.3 310 64.8
PSO384G3385 Papaver somniferum HOM05D002214 ORTHO05D007367 9.1e-118 427.9 419 52.5
unitig_22.g5896 Utricularia gibba HOM05D002214 ORTHO05D007367 1.5e-117 427.2 409 50.6
ATR0782G063 Amborella trichopoda HOM05D002214 ORTHO05D007367 3.8e-116 422.5 409 51.1
Ah.16g100650 Amaranthus hybridus HOM05D002214 ORTHO05D007367 8.5e-116 421.4 370 53.8
Nitab4.5_0001244g0060 Nicotiana tabacum HOM05D002214 ORTHO05D007367 1.4e-115 420.6 415 52.3
ECA236G0637 Erigeron canadensis HOM05D002214 ORTHO05D001664 3.2e-115 419.5 396 50.5
HPP92_021380 Vanilla planifolia HOM05D002214 ORTHO05D007367 3.2e-115 419.5 416 50.7
MBI03_g28525_MAGBIO Magnolia biondii HOM05D002214 ORTHO05D007367 2.3e-113 413.3 415 51.6
Peaxi162Scf01270g00126 Petunia axillaris HOM05D002214 ORTHO05D007367 3.0e-113 412.9 431 50.8
Os11g0182400 Oryza sativa ssp. japonica HOM05D002214 ORTHO05D007367 3.1e-110 402.9 406 49.5
Zm00001eb091260 Zea mays HOM05D002214 ORTHO05D007367 3.1e-110 402.9 411 48.4
ClCG09G004430 Citrullus lanatus HOM05D002214 ORTHO05D007367 2.1e-106 390.2 378 52.6
Dinv07431 Davidia involucrata HOM05D002214 ORTHO05D005113 4.7e-106 389.0 308 61.7
QL04p010150 Quercus lobata HOM05D002214 ORTHO05D007367 8.0e-106 388.3 352 57.7
EL10Ac2g04369 Beta vulgaris HOM05D002214 ORTHO05D007367 6.7e-105 385.2 416 48.1
Nitab4.5_0008942g0050 Nicotiana tabacum HOM05D002214 ORTHO05D007367 1.2e-98 364.4 416 47.1
Oeu051405.1 Olea europaea HOM05D002214 ORTHO05D007367 6.1e-90 335.5 320 52.2
FAN24G1013 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.4e-89 334.3 436 45.4
FvH4_2g17890 Fragaria vesca HOM05D002214 ORTHO05D007367 3.0e-89 333.2 436 45.2
QL04p010068 Quercus lobata HOM05D002214 ORTHO05D007367 1.1e-86 324.7 251 61.8
AUR62009418 Chenopodium quinoa HOM05D002214 ORTHO05D007367 4.5e-85 319.3 415 42.4
FAN15G3441 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.0e-84 318.2 434 44.7
FAN24G2408 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.3e-83 313.2 436 44.3
HanXRQChr04g0119861 Helianthus annuus HOM05D002214 ORTHO05D007367 3.6e-82 309.7 262 54.6
Haze_03152 Corylus avellana HOM05D002214 ORTHO05D007367 1.0e-81 308.1 395 43.3
Haze_03149 Corylus avellana HOM05D002214 ORTHO05D007367 5.2e-81 305.8 395 43.0
FAN27G1816 Fragaria x ananassa HOM05D002214 ORTHO05D007367 8.3e-79 298.5 434 42.2
FAN06G2164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 3.5e-77 293.1 226 60.2
MELO3C023585.2 Cucumis melo HOM05D002214 ORTHO05D007367 9.5e-75 285.0 408 41.7
SalBow6G2835 Salvia bowleyana HOM05D002214 ORTHO05D007367 2.1e-74 283.9 313 49.5
FAN27G1164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 7.5e-72 275.4 414 43.0
Aa31LG10G14890 Aethionema arabicum HOM05D002214 ORTHO05D007367 3.4e-64 250.0 240 50.8
Cpa.g.sc125.50 Carica papaya HOM05D002214 ORTHO05D007367 3.9e-60 236.5 196 60.7
RcHm_v2.0_Chr6g0283161 Rosa chinensis HOM05D002214 ORTHO05D007367 1.1e-59 235.0 307 45.6
QL04p010120 Quercus lobata HOM05D002214 ORTHO05D007367 1.5e-59 234.6 204 59.8
AagrBONN_evm.TU.Sc2ySwM_344.2511 Anthoceros agrestis HOM05D002214 ORTHO05D007367 4.3e-59 233.0 447 31.1
Cpa.g.sc125.51 Carica papaya HOM05D002214 ORTHO05D007367 6.2e-58 229.2 228 51.3
COL.COLO4_12334 Corchorus olitorius HOM05D000031 ORTHO05D000030 2.5e-51 207.2 337 37.7
Lj9A641T67 Lonicera japonica HOM05D002214 ORTHO05D007367 8.9e-49 198.7 283 39.6
Pp3c8_19810 Physcomitrium patens HOM05D002214 ORTHO05D007367 4.4e-48 196.4 405 29.9
CDE04G0429 Ceratophyllum demersum HOM05D002214 ORTHO05D007367 1.4e-46 191.4 191 50.3
MD07G1016900 Malus domestica HOM05D002214 ORTHO05D007367 3.2e-46 190.3 221 48.9
Hund16633 Selenicereus undatus HOM05D002214 ORTHO05D007367 1.7e-44 184.5 150 61.3
Hma1.2p1_0685F.1_g203270 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 3.6e-42 176.8 149 58.4
Hund16632 Selenicereus undatus HOM05D002214 ORTHO05D007367 1.9e-38 164.5 151 51.7
FAN06G4994 Fragaria x ananassa HOM05D002214 ORTHO05D007367 7.1e-38 162.5 134 59.0
FvH4_2g17910 Fragaria vesca HOM05D002214 ORTHO05D007367 1.2e-37 161.8 230 41.7
FAN24G3278 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.2e-37 161.8 230 41.7
CBR_g46897 Chara braunii HOM05D002214 ORTHO05D007367 1.7e-36 157.9 378 30.4
SMO137G0282 Selaginella moellendorffii HOM05D002214 ORTHO05D007367 2.3e-36 157.5 359 32.6
Mapoly0009s0234 Marchantia polymorpha HOM05D002214 ORTHO05D007367 9.9e-32 142.1 298 30.2
SEGI_30351 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 1.2e-29 135.2 140 47.9
Aa31LG10G14900 Aethionema arabicum HOM05D002214 ORTHO05D007367 1.0e-28 132.1 119 57.1
Thecc.01G405700 Theobroma cacao HOM05D002214 ORTHO05D007367 9.6e-27 125.6 91 58.2
Thecc.01G405800 Theobroma cacao HOM05D002214 ORTHO05D007367 1.3e-26 125.2 87 70.1
SEGI_07097 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 3.7e-26 123.6 130 44.6
Oeu016638.1 Olea europaea HOM05D002214 ORTHO05D007367 3.8e-23 113.6 103 55.3
Hma1.2p1_0685F.1_g203250 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 1.9e-19 101.3 122 45.1
Duzib133G0745 Durio zibethinus HOM05D002214 ORTHO05D007367 4.3e-19 100.1 69 60.9
FAN24G0587 Fragaria x ananassa HOM05D002214 ORTHO05D045595 2.5e-11 74.3 82 48.8
FAN27G0150 Fragaria x ananassa HOM05D002214 ORTHO05D007367 8.5e-07 59.3 125 33.6


User provided reference genes

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