Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1994.2 1028 100.0
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1414.8 1013 71.5
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1413.7 1008 71.9
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1411.0 1047 70.2
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1410.6 1037 70.5
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1406.0 1038 70.0
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1401.0 1038 69.9
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1397.9 1032 70.3
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1395.2 1025 69.5
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1394.0 1022 69.4
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1391.7 1033 70.2
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1391.7 1023 70.1
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1389.8 1033 70.1
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1388.2 1033 70.2
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1387.5 1005 71.0
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1384.4 1032 69.7
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1382.5 1026 69.1
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1381.7 1026 69.0
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1381.3 1024 69.3
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1380.9 1030 69.9
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1377.1 1057 68.5
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1375.1 1031 69.4
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1369.0 1022 69.1
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1364.7 1035 69.4
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1362.8 1000 70.2
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1362.1 1040 68.8
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1361.7 1003 70.6
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1359.0 1034 69.1
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1359.0 1035 69.1
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1357.4 1027 68.6
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1357.0 1009 70.0
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1356.3 1031 69.0
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1356.3 1022 68.2
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1355.5 1060 67.8
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1355.5 1020 68.7
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1352.4 1002 69.6
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1350.9 1013 69.2
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1345.5 1037 68.1
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1344.7 1014 68.9
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1342.8 1038 67.8
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1342.8 973 70.6
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1342.8 1051 67.6
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1342.0 1032 67.2
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1337.4 1062 67.5
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1334.7 1031 67.9
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1334.3 1004 68.4
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1333.5 1019 67.3
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1333.5 1040 67.4
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1330.1 1011 68.1
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1327.4 1000 68.1
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1325.8 1032 67.5
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1319.3 1012 67.7
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1318.1 1012 67.4
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1315.1 1082 64.7
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1314.7 1012 67.4
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1313.1 1014 67.3
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1312.0 1012 67.3
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1310.8 1028 66.5
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1305.4 1020 66.5
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1305.0 1025 65.5
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1303.5 1021 66.3
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1303.1 1012 67.7
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1303.1 1012 67.7
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1298.9 1014 66.4
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1298.9 1027 66.2
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1297.0 1034 65.2
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1295.0 1012 66.4
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1294.6 1034 66.1
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1287.3 1030 66.4
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1284.2 1001 67.1
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1282.3 1022 65.8
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1279.6 1010 66.0
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1276.5 1015 66.3
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1276.5 1010 65.8
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1275.4 1003 66.3
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1274.6 1014 66.3
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1272.7 1012 65.8
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1269.6 1000 65.7
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1268.8 998 66.5
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1266.9 1075 63.3
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1266.1 1033 65.6
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1265.0 1029 63.7
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1262.7 1008 65.7
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1262.3 1027 64.0
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1260.7 1007 65.8
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1259.6 1003 66.0
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1259.2 1001 64.7
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1258.8 1022 63.8
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1256.5 1027 63.8
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1255.4 1010 64.9
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1250.3 1013 64.3
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1248.4 1008 64.6
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1246.9 1029 64.6
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1246.9 887 72.7
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1245.0 1018 64.9
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1244.2 950 66.7
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1243.8 887 72.2
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1239.2 1000 65.3
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1239.2 1020 64.8
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1237.2 913 68.8
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1236.5 1001 65.4
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1236.5 1001 65.3
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1234.2 1015 64.8
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1218.4 1005 64.4
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1215.7 1037 62.8
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1214.1 912 69.5
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1211.8 1023 62.1
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1208.7 994 64.0
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1204.5 1003 63.2
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1196.0 1013 63.0
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1194.9 985 63.4
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1192.9 1013 62.7
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1190.3 1011 62.9
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1183.7 1005 61.9
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1179.9 1017 61.8
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1174.1 1029 61.5
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1173.3 1032 60.2
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1139.0 928 64.7
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1123.2 1024 59.6
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1114.0 1029 60.0
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1107.4 1022 59.9
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1087.4 988 58.8
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1080.5 999 59.3
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 5.0e-308 1061.2 1026 57.6
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 2.5e-307 1058.9 1076 55.6
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 1.0e-305 1053.5 1027 57.0
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 6.7e-305 1050.8 848 63.7
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 8.2e-303 1043.9 1019 55.7
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 3.7e-271 938.7 791 64.7
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.6e-266 923.3 886 55.4
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 9.8e-264 914.1 981 52.7
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 3.7e-263 912.1 1051 52.9
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 1.3e-255 887.1 837 58.7
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 4.1e-254 882.1 717 67.2
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 2.1e-253 879.8 991 50.9
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 3.4e-248 862.4 738 65.3
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 1.1e-238 830.9 998 48.5
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 6.4e-231 805.1 985 47.6
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 1.1e-230 804.3 822 53.0
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 1.6e-229 800.4 816 54.3
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 6.0e-229 798.5 973 47.4
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 2.3e-228 796.6 973 47.6
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 6.7e-204 715.3 713 60.0
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 3.0e-196 689.9 910 44.7
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 1.8e-180 637.5 661 53.3
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 7.5e-179 632.1 828 48.6
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 1.6e-168 597.8 631 53.2
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 8.6e-167 592.0 937 40.6
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 3.0e-156 557.0 617 51.4
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 9.8e-155 552.0 662 49.7
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.0e-143 513.8 587 50.8
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 7.5e-139 499.2 1153 33.6
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 4.6e-120 436.8 638 42.3
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 9.6e-110 402.5 263 77.2
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 1.1e-105 389.0 399 51.9
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 8.4e-98 362.8 539 41.2
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.1e-94 352.4 225 79.1
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 2.0e-86 325.1 266 65.0
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.5e-83 315.5 313 55.9
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 1.8e-71 275.4 980 28.7
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 1.8e-68 265.4 282 53.5
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 3.1e-52 211.5 526 31.0
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 1.6e-48 199.1 918 23.4
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.0e-47 194.9 152 60.5
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 6.6e-42 177.2 200 45.0
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 2.8e-40 171.8 184 51.6
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 2.6e-38 165.2 165 54.5
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 8.3e-37 160.2 223 38.6
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 6.2e-32 144.1 178 47.8
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 6.8e-23 114.0 141 40.4
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 1.9e-20 105.9 128 42.2
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 4.0e-15 88.2 79 45.6
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 4.0e-15 88.2 79 45.6
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 1.5e-14 86.3 112 40.2
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 7.6e-14 84.0 63 69.8
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 9.3e-12 77.0 54 77.8
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 4.4e-06 58.2 66 45.5


User provided reference genes

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