Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 0.0e+00 2455.6 1414 100.0
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 0.0e+00 1194.5 1446 56.9
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 0.0e+00 1134.0 1520 53.1
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 0.0e+00 1132.1 1445 54.3
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 0.0e+00 1122.5 1443 54.3
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 0.0e+00 1112.4 1435 53.2
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 0.0e+00 1099.0 1398 54.1
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 0.0e+00 1098.2 1484 52.4
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 0.0e+00 1091.3 1439 52.5
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 0.0e+00 1082.8 1437 52.5
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 0.0e+00 1082.4 1448 52.6
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 0.0e+00 1077.0 1423 53.9
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 1.6e-309 1066.6 1478 52.1
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 3.6e-309 1065.4 1443 51.8
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 4.2e-305 1052.0 1517 51.1
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 1.3e-303 1047.0 1477 51.6
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 5.6e-302 1041.6 1440 51.2
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 1.5e-299 1033.5 1449 52.9
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 1.1e-297 1027.3 1440 50.1
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 1.6e-296 1023.5 1445 50.7
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.6e-296 1023.5 1444 50.3
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 1.6e-296 1023.5 1446 50.4
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 1.0e-295 1020.8 1468 51.6
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.7e-295 1020.0 1444 50.3
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 3.0e-295 1019.2 1457 50.2
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 9.0e-292 1007.7 1442 52.1
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.5e-291 1006.9 1442 49.9
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 2.6e-291 1006.1 1370 51.9
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 2.6e-291 1006.1 1448 50.3
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 9.3e-289 997.7 1442 51.9
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 3.5e-288 995.7 1506 49.5
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.1e-286 990.7 1476 49.4
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 1.9e-286 989.9 1448 51.2
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 4.3e-286 988.8 1529 48.3
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 1.4e-276 957.2 1460 48.4
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 3.8e-274 949.1 1438 48.6
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 3.8e-274 949.1 1457 48.5
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 1.9e-270 936.8 1500 47.2
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 2.5e-270 936.4 1462 47.5
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 8.2e-269 931.4 1472 48.2
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 8.5e-266 921.4 1523 45.5
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 1.2e-264 917.5 1470 46.7
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 1.4e-263 914.1 1502 47.5
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 7.4e-262 908.3 1474 46.7
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 1.7e-261 907.1 1536 46.6
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 4.8e-261 905.6 1469 46.4
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 2.4e-260 903.3 1503 47.2
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 2.6e-259 899.8 1506 47.3
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 3.2e-257 892.9 1421 48.1
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 1.2e-256 891.0 1458 46.4
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 1.6e-256 890.6 1504 47.1
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 9.7e-254 881.3 1544 45.3
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 2.4e-252 876.7 1487 47.1
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 9.1e-252 874.8 1437 47.0
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 2.5e-249 866.7 1272 50.2
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 4.2e-249 865.9 1424 45.9
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 2.0e-246 857.1 1476 47.6
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 4.4e-246 855.9 1510 46.7
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 1.6e-243 847.4 1455 45.9
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 3.5e-243 846.3 1366 46.9
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 9.4e-241 838.2 1454 45.1
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 5.2e-239 832.4 1470 47.8
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 2.2e-237 827.0 1487 43.8
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 4.8e-237 825.9 1468 44.8
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 4.1e-236 822.8 1484 47.2
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 1.9e-233 813.9 724 65.5
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 2.5e-233 813.5 1457 46.0
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 4.2e-233 812.8 1444 45.1
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 1.4e-228 797.7 1517 44.0
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 3.5e-227 793.1 1466 46.3
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 3.8e-226 789.6 1443 46.0
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 1.8e-220 770.8 1490 43.7
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 2.4e-220 770.4 1482 45.1
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 4.6e-219 766.1 1667 41.5
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 1.5e-217 761.1 1474 43.6
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 1.5e-217 761.1 1555 43.9
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 1.2e-216 758.1 1212 46.9
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 4.9e-213 746.1 1262 44.9
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 2.0e-211 740.7 1454 43.9
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 6.6e-210 735.7 1461 41.5
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 1.4e-207 728.0 1493 41.9
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 6.8e-207 725.7 1437 44.3
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 3.4e-206 723.4 1445 43.5
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 9.8e-206 721.8 1450 43.4
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 1.7e-205 721.1 1438 44.4
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 3.5e-203 713.4 1434 43.7
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 3.5e-203 713.4 1434 43.7
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 6.0e-203 712.6 1438 43.9
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 1.9e-201 707.6 1478 41.2
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 3.6e-192 676.8 1050 45.8
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 8.4e-189 665.6 1415 40.1
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 5.4e-188 662.9 1439 41.2
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 1.8e-183 647.9 1503 39.9
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 1.8e-183 647.9 1450 41.5
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 7.9e-171 605.9 1436 39.8
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 7.1e-164 582.8 592 62.5
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 1.0e-157 562.4 1219 37.4
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 7.4e-153 546.2 1506 38.9
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 1.4e-151 542.0 1445 37.6
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 6.3e-144 516.5 1244 39.7
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 1.2e-142 512.3 1427 33.6
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 1.0e-133 482.6 1280 35.1
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 9.4e-132 476.1 1484 37.5
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 4.2e-124 450.7 827 43.7
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.2e-123 449.1 592 48.3
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 3.8e-117 427.6 1297 33.5
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 2.5e-84 318.5 1459 31.0
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 3.3e-84 318.2 793 38.5
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 1.0e-69 270.0 1485 26.8
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 1.3e-56 226.5 1490 26.1
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 9.3e-55 220.3 977 25.8
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 1.3e-53 216.5 342 37.4
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 3.0e-53 215.3 1491 25.5
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 1.5e-52 213.0 433 44.8
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 1.9e-52 212.6 1453 24.4
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 1.3e-48 199.9 257 49.0
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 1.0e-32 147.1 171 46.2
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 5.0e-32 144.8 441 34.2
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 5.5e-31 141.4 92 69.6
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 1.1e-28 133.7 474 40.9
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 5.7e-28 131.3 319 38.6
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 2.8e-27 129.0 242 45.0
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 4.1e-26 125.2 138 56.5
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 4.5e-25 121.7 496 33.3
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 1.4e-21 110.2 64 84.4
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 2.3e-21 109.4 277 43.7
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 4.4e-20 105.1 118 46.6
MBI02_g24140_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 3.7e-19 102.1 130 49.2
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 4.8e-19 101.7 69 69.6
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 2.9e-16 92.4 64 62.5
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 5.0e-16 91.7 305 36.4
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 1.9e-15 89.7 792 24.0
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.3e-13 82.8 50 74.0
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 2.0e-12 79.7 70 52.9
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 1.7e-11 76.6 95 47.4
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 2.2e-11 76.3 79 51.9
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 2.2e-11 76.3 225 26.2
Actinidia04099 Actinidia chinensis HOM05D004594 ORTHO05D005225 3.7e-11 75.5 260 31.2
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 1.4e-10 73.6 50 64.0
SHI24778 Sapria himalayana HOM05D004594 ORTHO05D005225 4.1e-10 72.0 150 40.0
Potri.008G089100 Populus trichocarpa HOM05D004340 ORTHO05D005225 1.6e-09 70.1 54 70.4
Actinidia04098 Actinidia chinensis HOM05D004594 ORTHO05D005225 3.5e-09 68.9 218 35.8
Atru.chr11.1749 Acer truncatum HOM05D004594 ORTHO05D005225 2.9e-08 65.9 165 41.8
MBI07_g23220_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 5.0e-08 65.1 103 38.8
BraA02t08348Z Brassica rapa HOM05D004594 ORTHO05D005225 1.9e-07 63.2 41 68.3
RcHm_v2.0_Chr3g0458311 Rosa chinensis HOM05D004594 ORTHO05D005225 3.2e-07 62.4 89 43.8
Oeu052406.1 Olea europaea HOM05D004594 ORTHO05D005225 7.2e-07 61.2 91 52.7
QL03p068420 Quercus lobata HOM05D004594 ORTHO05D005225 2.7e-06 59.3 245 31.8
BcaB05g23630 Brassica carinata HOM05D004594 ORTHO05D005225 4.7e-06 58.5 154 33.1


User provided reference genes

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