Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 5.8e-193 677.6 382 100.0
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 2.3e-186 655.6 376 98.1
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 1.5e-92 344.0 375 55.2
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 9.8e-92 341.3 377 53.8
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 8.3e-91 338.2 383 54.3
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 2.7e-89 333.2 384 54.7
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 1.3e-88 330.9 400 53.8
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 1.7e-88 330.5 393 51.7
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 3.8e-88 329.3 390 52.6
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 1.0e-85 321.2 417 50.6
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 4.0e-85 319.3 386 53.4
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 5.2e-85 318.9 378 51.9
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 5.2e-85 318.9 378 52.1
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 1.2e-84 317.8 378 52.1
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 2.4e-82 310.1 378 50.3
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 3.2e-82 309.7 372 52.7
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 4.1e-82 309.3 373 53.4
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 3.5e-81 306.2 377 49.3
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 1.0e-80 304.7 389 51.2
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 1.3e-80 304.3 405 50.4
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 2.3e-80 303.5 387 50.6
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 2.9e-80 303.1 374 51.3
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 6.6e-80 302.0 374 51.3
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 1.5e-79 300.8 379 51.7
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 5.6e-79 298.9 389 51.9
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 4.7e-78 295.8 403 48.1
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 2.3e-77 293.5 374 49.2
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 2.3e-77 293.5 392 52.0
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 2.3e-77 293.5 374 52.1
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 1.5e-76 290.8 399 47.6
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 2.0e-76 290.4 411 47.2
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 2.6e-76 290.0 386 51.3
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 9.8e-76 288.1 381 48.0
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 9.8e-76 288.1 370 50.8
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 3.7e-75 286.2 370 50.0
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 6.4e-75 285.4 391 47.6
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 1.1e-74 284.6 373 50.1
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.2e-74 283.1 369 50.1
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 4.1e-74 282.7 398 47.0
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 5.4e-74 282.3 409 48.2
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 5.4e-74 282.3 392 47.4
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 7.0e-74 282.0 380 49.7
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 2.7e-73 280.0 376 46.5
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 1.7e-72 277.3 379 44.9
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 3.0e-72 276.6 417 46.3
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 2.5e-71 273.5 381 46.5
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 7.3e-71 271.9 377 45.4
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 9.5e-71 271.6 384 49.7
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 3.6e-70 269.6 390 46.9
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 4.7e-70 269.2 377 45.1
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 1.8e-69 267.3 403 46.2
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.8e-69 267.3 409 46.7
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 3.1e-69 266.5 392 45.4
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 3.1e-69 266.5 324 51.2
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 2.0e-68 263.8 373 46.4
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 5.8e-68 262.3 366 45.9
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 9.8e-68 261.5 376 45.7
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.7e-67 260.8 389 47.3
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 1.7e-67 260.8 387 47.3
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 2.2e-67 260.4 370 46.2
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 1.1e-66 258.1 368 43.8
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 1.9e-66 257.3 410 44.6
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 3.2e-66 256.5 378 47.1
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 3.2e-66 256.5 390 44.1
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 1.6e-65 254.2 367 44.7
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 2.7e-65 253.4 388 45.1
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 2.7e-65 253.4 377 43.0
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 2.3e-64 250.4 368 44.0
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 2.3e-64 250.4 348 48.3
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 1.5e-63 247.7 380 45.5
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 4.3e-63 246.1 363 45.5
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 1.6e-62 244.2 404 46.5
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 4.7e-62 242.7 378 42.6
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 8.1e-62 241.9 394 41.9
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 4.0e-61 239.6 378 42.1
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 6.8e-61 238.8 402 45.8
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 8.9e-61 238.4 408 46.8
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 8.9e-61 238.4 426 39.9
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 1.5e-60 237.7 374 43.9
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 2.0e-60 237.3 402 45.8
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 3.4e-60 236.5 326 46.6
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 3.4e-60 236.5 376 43.4
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 2.9e-59 233.4 374 47.1
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 1.4e-58 231.1 376 45.2
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 2.4e-58 230.3 414 44.0
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 4.1e-58 229.6 365 43.8
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 4.1e-58 229.6 310 47.4
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 7.1e-58 228.8 399 42.1
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.7e-57 226.9 323 45.8
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 2.7e-57 226.9 412 45.4
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 3.5e-57 226.5 362 45.0
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 6.0e-57 225.7 387 41.3
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 3.0e-56 223.4 381 45.4
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 3.0e-56 223.4 387 45.2
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 3.9e-56 223.0 370 50.5
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 6.6e-56 222.2 401 44.1
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 8.6e-56 221.9 378 45.8
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 8.6e-56 221.9 382 45.3
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 8.6e-56 221.9 382 45.3
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 8.6e-56 221.9 382 45.3
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 8.6e-56 221.9 378 45.8
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 1.5e-55 221.1 391 43.5
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 3.3e-55 219.9 375 41.9
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 7.3e-55 218.8 408 42.6
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 7.3e-55 218.8 387 43.4
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 1.2e-54 218.0 396 42.2
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 3.6e-54 216.5 377 41.1
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 1.8e-53 214.2 400 45.5
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 1.5e-52 211.1 419 44.4
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 2.0e-52 210.7 344 47.4
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 2.0e-52 210.7 344 47.4
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 1.7e-51 207.6 354 44.6
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 2.9e-51 206.8 385 47.5
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 1.4e-50 204.5 372 40.3
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 7.1e-50 202.2 395 42.5
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 7.1e-50 202.2 395 42.5
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 1.6e-49 201.1 367 40.1
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 7.8e-49 198.7 205 57.1
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 7.8e-49 198.7 346 43.4
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.5e-47 194.5 404 37.4
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 3.3e-47 193.4 390 43.1
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 7.3e-47 192.2 373 40.8
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 2.8e-46 190.3 381 41.7
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 4.8e-46 189.5 173 63.0
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 2.2e-43 180.6 343 39.9
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.4e-42 177.9 407 38.8
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 2.1e-41 174.1 355 39.2
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 1.7e-40 171.0 374 36.9
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 2.3e-40 170.6 196 52.6
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 8.7e-40 168.7 411 38.7
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 9.6e-39 165.2 348 40.2
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 2.1e-38 164.1 276 44.6
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 6.2e-38 162.5 385 40.5
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 4.0e-37 159.8 248 44.8
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 5.6e-31 139.4 384 35.2
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 1.5e-28 131.3 251 39.8
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 3.4e-28 130.2 225 45.8
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 9.3e-26 122.1 179 48.0
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 3.8e-19 100.1 566 25.3
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 3.0e-16 90.5 152 44.7
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 3.0e-16 90.5 332 35.5
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 1.3e-14 85.1 228 35.1
Actinidia37514 Actinidia chinensis HOM05D000378 ORTHO05D006084 1.5e-07 61.6 52 63.5


User provided reference genes

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