Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G01768 Eucalyptus grandis HOM05D006341 ORTHO05D000377 3.2e-278 961.1 468 100.0
Ciclev10028267m.g Citrus clementina HOM05D006341 ORTHO05D000377 5.1e-183 644.8 497 66.6
Duzib132G0346 Durio zibethinus HOM05D006341 ORTHO05D000377 3.6e-181 638.6 499 65.7
Dinv04950 Davidia involucrata HOM05D006341 ORTHO05D000377 6.2e-181 637.9 509 63.9
PGR042G0052 Punica granatum HOM05D006341 ORTHO05D000377 1.5e-179 633.3 499 65.3
TWI53G1223 Tripterygium wilfordii HOM05D006341 ORTHO05D000377 5.8e-179 631.3 500 64.2
Thecc.02G064100 Theobroma cacao HOM05D006341 ORTHO05D000377 9.9e-179 630.6 506 65.4
Gohir.A12G038400 Gossypium hirsutum HOM05D006341 ORTHO05D000377 1.3e-178 630.2 498 64.9
CSS0004411 Camellia sinensis var. sinensis HOM05D006341 ORTHO05D000377 3.8e-178 628.6 501 64.5
TAR381G0106 Trochodendron aralioides HOM05D006341 ORTHO05D000377 4.9e-178 628.2 503 64.8
Atru.chr5.3271 Acer truncatum HOM05D006341 ORTHO05D000377 8.4e-178 627.5 490 65.5
Potri.004G172100 Populus trichocarpa HOM05D006341 ORTHO05D000377 3.2e-177 625.5 501 64.3
Haze_02181 Corylus avellana HOM05D006341 ORTHO05D000377 5.4e-177 624.8 473 66.2
Haze_02174 Corylus avellana HOM05D006341 ORTHO05D000377 1.2e-176 623.6 473 66.0
COL.COLO4_17298 Corchorus olitorius HOM05D006341 ORTHO05D000377 2.1e-176 622.9 503 64.0
Gohir.D12G033900 Gossypium hirsutum HOM05D006341 ORTHO05D000377 2.1e-176 622.9 498 64.7
Sabra04G0114400 Salix brachista HOM05D006341 ORTHO05D000377 2.1e-176 622.9 501 63.5
Gorai.008G034900 Gossypium raimondii HOM05D006341 ORTHO05D000377 1.7e-175 619.8 498 64.5
Hma1.2p1_0032F.1_g019570 Hydrangea macrophylla HOM05D006341 ORTHO05D000377 2.3e-175 619.4 498 62.9
Prupe.8G162700 Prunus persica HOM05D006341 ORTHO05D000377 2.3e-175 619.4 493 63.5
vmacro02264 Vaccinium macrocarpon HOM05D006341 ORTHO05D000377 3.9e-175 618.6 536 60.8
Manes.11G082657 Manihot esculenta HOM05D006341 ORTHO05D000377 3.3e-174 615.5 500 63.2
FvH4_2g01620 Fragaria vesca HOM05D006341 ORTHO05D000377 4.3e-174 615.1 493 64.1
RcHm_v2.0_Chr6g0244411 Rosa chinensis HOM05D006341 ORTHO05D000377 2.8e-173 612.5 501 63.5
MD05G1118100 Malus domestica HOM05D006341 ORTHO05D000377 4.8e-173 611.7 496 63.3
Nn7g37263 Nelumbo nucifera HOM05D006341 ORTHO05D000377 1.1e-172 610.5 503 61.8
QL11p049167 Quercus lobata HOM05D006341 ORTHO05D000377 2.6e-171 605.9 480 64.4
RcHm_v2.0_Chr6g0244441 Rosa chinensis HOM05D006341 ORTHO05D000377 2.6e-171 605.9 496 62.7
Oeu006673.1 Olea europaea HOM05D006341 ORTHO05D000377 4.4e-171 605.1 499 60.7
CsaV3_7G000880 Cucumis sativus L. HOM05D006341 ORTHO05D000377 5.4e-169 598.2 494 62.6
Actinidia00608 Actinidia chinensis HOM05D006341 ORTHO05D000377 1.2e-168 597.0 471 63.9
COL.COLO4_17179 Corchorus olitorius HOM05D006341 ORTHO05D000377 1.0e-167 594.0 477 64.6
Atru.chr5.3277 Acer truncatum HOM05D006341 ORTHO05D000377 5.1e-167 591.7 496 62.3
CANSAT25G3024 Cannabis sativa HOM05D006341 ORTHO05D000377 8.7e-167 590.9 498 60.2
Cc06_g16120 Coffea canephora HOM05D006341 ORTHO05D000377 6.9e-164 581.3 501 60.9
Lsat_1_v5_gn_8_124961 Lactuca sativa HOM05D006341 ORTHO05D000377 9.9e-163 577.4 477 61.4
Hund06416 Selenicereus undatus HOM05D006341 ORTHO05D000377 3.8e-162 575.5 522 58.0
EL10Ac9g21414 Beta vulgaris HOM05D006341 ORTHO05D000377 1.4e-161 573.5 518 58.5
HanXRQChr17g0553851 Helianthus annuus HOM05D006341 ORTHO05D000377 3.2e-161 572.4 464 62.3
TPR.G31245 Trifolium pratense HOM05D006341 ORTHO05D000377 7.1e-161 571.2 495 59.8
Peaxi162Scf00434g00625 Petunia axillaris HOM05D006341 ORTHO05D000377 1.0e-159 567.4 491 60.1
CAN.G134.236 Capsicum annuum HOM05D006341 ORTHO05D000377 1.3e-159 567.0 488 60.5
Solyc01g098460.4 Solanum lycopersicum HOM05D006341 ORTHO05D000377 1.8e-159 566.6 491 60.1
Aqoxy5G01641 Aquilegia oxysepala HOM05D006341 ORTHO05D000377 1.1e-158 563.9 489 59.1
Rhsim11G0190600 Rhododendron simsii HOM05D006341 ORTHO05D000377 1.9e-158 563.1 500 60.8
Lj4g0012983 Lotus japonicus HOM05D006341 ORTHO05D000377 3.3e-158 562.4 491 59.9
Sopen01g042030 Solanum pennellii HOM05D006341 ORTHO05D000377 5.6e-158 561.6 491 59.7
THA.LOC104807791 Tarenaya hassleriana HOM05D006341 ORTHO05D000377 3.7e-157 558.9 497 58.1
MBI02_g27965_MAGBIO Magnolia biondii HOM05D006341 ORTHO05D000377 6.2e-157 558.1 489 58.7
Sed0009186 Sechium edule HOM05D006341 ORTHO05D000377 2.0e-155 553.1 455 62.0
Migut.B00102 Erythranthe guttata HOM05D006341 ORTHO05D000377 4.5e-155 552.0 494 56.9
Psat7g085760 Pisum sativum HOM05D006341 ORTHO05D000377 5.8e-155 551.6 496 58.3
Sc08g0003080 Simmondsia chinensis HOM05D006341 ORTHO05D000377 4.9e-154 548.5 513 55.8
FAN20G2467 Fragaria x ananassa HOM05D006341 ORTHO05D000377 6.4e-154 548.1 365 72.9
AUR62010072 Chenopodium quinoa HOM05D006341 ORTHO05D000377 1.2e-152 543.9 505 56.6
Thhalv10000146m.g Eutrema salsugineum HOM05D006341 ORTHO05D000377 2.7e-152 542.7 502 57.0
FAN24G0408 Fragaria x ananassa HOM05D006341 ORTHO05D000377 3.5e-152 542.3 365 72.3
Sp4g00210 Schrenkiella parvula HOM05D006341 ORTHO05D000377 6.0e-152 541.6 494 56.3
Dinv39489 Davidia involucrata HOM05D006341 ORTHO05D000377 7.9e-152 541.2 467 58.9
MSTRG.16892 Avicennia marina HOM05D006341 ORTHO05D000377 8.7e-151 537.7 498 55.8
MELO3C013369.2 Cucumis melo HOM05D006341 ORTHO05D000377 1.5e-150 537.0 453 61.1
Nitab4.5_0001423g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 1.9e-150 536.6 490 56.9
AT2G21070 Arabidopsis thaliana HOM05D006341 ORTHO05D000377 2.5e-150 536.2 499 56.1
Carub.0003s3491 Capsella rubella HOM05D006341 ORTHO05D000377 2.5e-150 536.2 497 56.5
GSVIVG01024058001 Vitis vinifera HOM05D006341 ORTHO05D000377 9.6e-150 534.3 500 58.0
Ca_18243_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 2.1e-149 533.1 471 59.2
Lj5A183G92 Lonicera japonica HOM05D006341 ORTHO05D000377 6.2e-149 531.6 463 59.8
AL4G10160 Arabidopsis lyrata HOM05D006341 ORTHO05D000377 1.8e-148 530.0 496 56.0
CARHR111910 Cardamine hirsuta HOM05D006341 ORTHO05D000377 4.0e-148 528.9 499 55.9
arahy.Tifrunner.gnm1.ann1.MR7L4V Arachis hypogaea HOM05D006341 ORTHO05D000377 5.3e-148 528.5 506 56.5
ECA233G1460 Erigeron canadensis HOM05D006341 ORTHO05D000377 9.0e-148 527.7 473 57.7
Aa31LG7G15600 Aethionema arabicum HOM05D006341 ORTHO05D000377 1.5e-147 526.9 482 57.1
ClCG02G004230 Citrullus lanatus HOM05D006341 ORTHO05D000377 2.0e-147 526.6 511 56.9
BcaB06g27766 Brassica carinata HOM05D006341 ORTHO05D000377 2.6e-147 526.2 494 55.7
arahy.Tifrunner.gnm1.ann1.UN7M5W Arachis hypogaea HOM05D006341 ORTHO05D000377 4.5e-147 525.4 500 56.2
Lalb_Chr13g0293551 Lupinus albus HOM05D006341 ORTHO05D000377 1.0e-146 524.2 519 53.6
SalBow1G4312 Salvia bowleyana HOM05D006341 ORTHO05D000377 1.0e-146 524.2 495 53.7
BraA04t17219Z Brassica rapa HOM05D006341 ORTHO05D000377 2.9e-146 522.7 484 56.6
A04p15870 Brassica napus HOM05D006341 ORTHO05D000377 3.8e-146 522.3 484 57.0
SGA_v2.0_scaffold58G20406 Striga asiatica HOM05D006341 ORTHO05D000377 1.4e-145 520.4 502 54.4
C04p50300 Brassica napus HOM05D006341 ORTHO05D000377 2.5e-145 519.6 490 56.1
BolC4t26628H Brassica oleracea HOM05D006341 ORTHO05D000377 2.5e-145 519.6 490 56.1
Glyma.08G087700 Glycine max HOM05D006341 ORTHO05D000377 7.1e-145 518.1 496 56.7
Os02g0121200 Oryza sativa ssp. japonica HOM05D006341 ORTHO05D000377 6.1e-144 515.0 481 56.3
Nitab4.5_0001903g0070 Nicotiana tabacum HOM05D006341 ORTHO05D000377 1.3e-143 513.8 374 67.1
unitig_60.g25823 Utricularia gibba HOM05D006341 ORTHO05D000377 3.9e-143 512.3 484 54.5
CDE05G1540 Ceratophyllum demersum HOM05D006341 ORTHO05D000377 7.4e-142 508.1 506 53.0
Glyma.05G133200 Glycine max HOM05D006341 ORTHO05D000377 3.1e-140 502.7 497 54.7
HPP92_014019 Vanilla planifolia HOM05D006341 ORTHO05D000377 2.6e-139 499.6 492 54.1
ATR0810G159 Amborella trichopoda HOM05D006341 ORTHO05D000377 1.1e-137 494.2 503 52.5
Ah.01g008830 Amaranthus hybridus HOM05D006341 ORTHO05D000377 9.7e-134 481.1 406 60.1
VMungo0251G3227 Vigna mungo HOM05D006341 ORTHO05D000377 8.2e-133 478.0 458 57.0
QL11p048584 Quercus lobata HOM05D006341 ORTHO05D000377 2.4e-132 476.5 432 57.9
SHI05717 Sapria himalayana HOM05D006341 ORTHO05D000377 1.8e-127 460.3 511 48.9
Potri.009G131700 Populus trichocarpa HOM05D006341 ORTHO05D000377 2.0e-126 456.8 312 71.8
SEGI_13829 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 4.4e-126 455.7 518 49.4
SEGI_22420 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 2.8e-125 453.0 513 49.5
Mapoly0085s0033 Marchantia polymorpha HOM05D006341 ORTHO05D000377 5.3e-124 448.7 543 47.5
AagrBONN_evm.TU.Sc2ySwM_228.2682 Anthoceros agrestis HOM05D006341 ORTHO05D000377 3.0e-119 433.0 491 48.1
Phvul.002G189600 Phaseolus vulgaris HOM05D006341 ORTHO05D000377 6.3e-117 425.2 497 50.5
Pp3c8_21040 Physcomitrium patens HOM05D006341 ORTHO05D000377 7.0e-116 421.8 546 44.3
Cpa.g.sc37.173 Carica papaya HOM05D006341 ORTHO05D000377 9.8e-110 401.4 493 48.3
Zm00001eb208320 Zea mays HOM05D006341 ORTHO05D000377 3.1e-108 396.4 411 52.1
Atru.chr5.3221 Acer truncatum HOM05D006341 ORTHO05D000377 2.7e-107 393.3 314 62.4
CiPaw.06G124100 Carya illinoinensis HOM05D006341 ORTHO05D000377 7.0e-100 368.6 351 56.1
SMO169G0079 Selaginella moellendorffii HOM05D006341 ORTHO05D000377 1.4e-95 354.4 461 45.3
Carub.0004s0010 Capsella rubella HOM05D006341 ORTHO05D000377 7.0e-92 342.0 471 45.2
Ca_18241_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 1.0e-90 338.2 400 47.2
Nitab4.5_0008354g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 8.6e-90 335.1 272 62.5
FAN22G0308 Fragaria x ananassa HOM05D003409 ORTHO05D004015 1.3e-82 311.2 291 57.4
Sabra09G0102100 Salix brachista HOM05D006341 ORTHO05D000377 5.2e-71 272.7 411 43.8
MCO01G168 Micromonas commoda HOM05D006341 ORTHO05D000377 4.0e-63 246.5 330 39.7
Cre01.g044150 Chlamydomonas reinhardtii HOM05D006341 ORTHO05D000377 7.6e-62 242.3 390 36.7
PGSC0003DMG401028564 Solanum tuberosum HOM05D006341 ORTHO05D000377 3.8e-61 240.0 145 75.9
CBR_g23939 Chara braunii HOM05D006341 ORTHO05D000377 4.5e-46 189.9 720 25.0
PRCOL_00006207 Prasinoderma coloniale HOM05D006341 ORTHO05D000377 9.6e-41 172.2 335 32.2
FAN07G1625 Fragaria x ananassa HOM05D006341 ORTHO05D000377 1.3e-37 161.8 108 68.5
Oeu063293.1 Olea europaea HOM05D006341 ORTHO05D000377 1.9e-25 121.3 132 52.3
Actinidia20497 Actinidia chinensis HOM05D006341 ORTHO05D000377 1.6e-24 118.2 77 72.7
PGSC0003DMG402028564 Solanum tuberosum HOM05D006341 ORTHO05D000377 3.2e-20 104.0 65 72.3
FAN07G2354 Fragaria x ananassa HOM05D006341 ORTHO05D000377 1.7e-13 81.6 105 49.5
MD10G1121100 Malus domestica HOM05D006341 ORTHO05D000377 1.6e-06 58.5 45 62.2


User provided reference genes

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