Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 1.5e-112 409.5 191 100.0
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 4.6e-74 281.6 162 80.9
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 6.2e-63 244.6 151 74.2
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 2.4e-62 242.7 144 76.4
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 3.1e-62 242.3 144 76.4
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 3.1e-62 242.3 142 75.4
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 4.0e-62 241.9 143 76.9
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 9.0e-62 240.7 142 75.4
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 1.2e-61 240.4 164 70.7
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 3.4e-61 238.8 149 73.8
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 3.4e-61 238.8 142 76.8
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 3.4e-61 238.8 151 72.8
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 1.7e-60 236.5 153 72.5
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 6.4e-60 234.6 158 70.9
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 1.4e-59 233.4 147 74.8
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 1.9e-59 233.0 161 68.3
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 3.2e-59 232.3 147 73.5
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 3.2e-59 232.3 151 71.5
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 7.1e-59 231.1 158 65.8
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 7.1e-59 231.1 142 74.6
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 1.6e-58 229.9 141 72.3
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 2.1e-58 229.6 151 72.2
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 2.1e-58 229.6 121 83.5
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 2.1e-58 229.6 149 71.8
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 2.7e-58 229.2 129 76.7
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 4.6e-58 228.4 133 75.2
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 4.6e-58 228.4 121 83.5
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 4.6e-58 228.4 147 71.4
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 6.0e-58 228.0 149 69.1
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 1.3e-57 226.9 149 71.1
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 1.8e-57 226.5 158 63.9
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 1.8e-57 226.5 145 70.3
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 3.0e-57 225.7 158 63.9
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 6.7e-57 224.6 133 73.7
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 1.1e-56 223.8 149 70.5
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 1.5e-56 223.4 147 70.1
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.5e-56 223.4 143 72.7
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 1.9e-56 223.0 118 80.5
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 1.9e-56 223.0 147 68.0
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 4.3e-56 221.9 135 71.9
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 5.6e-56 221.5 149 66.4
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 5.6e-56 221.5 158 63.3
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 5.6e-56 221.5 124 79.8
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 7.4e-56 221.1 131 74.8
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 9.6e-56 220.7 133 72.9
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 1.6e-55 219.9 127 75.6
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 1.6e-55 219.9 126 73.8
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 2.1e-55 219.5 147 68.7
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 4.8e-55 218.4 146 67.8
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 4.8e-55 218.4 151 68.2
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 4.8e-55 218.4 144 70.1
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 8.1e-55 217.6 149 67.1
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 1.1e-54 217.2 151 67.5
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 1.1e-54 217.2 161 62.7
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 1.4e-54 216.9 136 73.5
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 1.4e-54 216.9 159 62.9
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 1.8e-54 216.5 159 64.8
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 3.1e-54 215.7 147 66.0
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 4.0e-54 215.3 140 69.3
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 5.3e-54 214.9 164 60.4
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 9.0e-54 214.2 143 64.3
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 1.2e-53 213.8 137 69.3
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 1.5e-53 213.4 144 68.1
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 2.0e-53 213.0 143 68.5
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 2.0e-53 213.0 159 61.6
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 5.8e-53 211.5 143 67.1
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 5.8e-53 211.5 143 69.2
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 1.0e-52 210.7 146 66.4
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 1.0e-52 210.7 136 67.6
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 1.3e-52 210.3 143 67.8
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 1.3e-52 210.3 141 69.5
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 3.8e-52 208.8 136 66.2
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 1.1e-51 207.2 143 66.4
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 1.1e-51 207.2 121 76.9
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 1.4e-51 206.8 143 65.0
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 1.4e-51 206.8 143 68.5
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 1.9e-51 206.5 125 73.6
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 2.5e-51 206.1 143 66.4
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 2.5e-51 206.1 143 66.4
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 3.2e-51 205.7 123 72.4
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 4.2e-51 205.3 136 67.6
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 7.1e-51 204.5 152 60.5
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 9.3e-51 204.1 140 65.7
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 9.3e-51 204.1 140 67.9
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 2.1e-50 203.0 147 65.3
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 4.6e-50 201.8 138 66.7
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.3e-49 200.3 153 60.8
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.3e-49 200.3 124 69.4
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 2.3e-49 199.5 140 63.6
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 3.0e-49 199.1 147 64.6
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 5.1e-49 198.4 143 59.4
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 5.1e-49 198.4 146 63.7
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 6.7e-49 198.0 137 59.9
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 4.3e-48 195.3 124 63.7
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 9.6e-48 194.1 176 53.4
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 1.6e-47 193.4 142 61.3
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 4.8e-47 191.8 142 63.4
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 2.4e-46 189.5 133 63.9
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 4.1e-46 188.7 109 74.3
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 7.2e-43 177.9 160 58.8
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 4.5e-37 158.7 102 73.5
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 5.0e-36 155.2 145 55.9
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 3.0e-33 146.0 117 53.8
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 3.9e-33 145.6 81 76.5
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 5.1e-33 145.2 138 50.7
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 8.8e-33 144.4 75 82.7
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 2.8e-31 139.4 96 59.4
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 6.5e-28 128.3 114 45.6
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 1.6e-26 123.6 74 71.6
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 2.1e-26 123.2 90 57.8
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 3.6e-26 122.5 90 56.7
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 2.3e-25 119.8 136 47.1
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 3.0e-25 119.4 144 45.8
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 3.0e-25 119.4 157 43.9
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 5.3e-22 108.6 89 49.4
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 7.0e-22 108.2 93 46.2
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 5.0e-20 102.1 93 48.4
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 6.5e-20 101.7 60 71.7
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 2.7e-18 96.3 92 46.7
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 5.2e-17 92.0 99 39.4
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 2.7e-13 79.7 67 53.7
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 4.5e-13 79.0 56 57.1
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.9e-12 76.3 80 51.2
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 1.6e-10 70.5 109 34.9
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 4.0e-09 65.9 80 46.2
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 1.2e-08 64.3 39 66.7
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 1.5e-08 63.9 40 65.0
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 4.4e-08 62.4 37 67.6
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 7.5e-08 61.6 86 40.7
Nitab4.5_0003335g0050 Nicotiana tabacum HOM05D002499 ORTHO05D002812 1.4e-06 57.4 79 31.6
Peaxi162Scf00023g01330 Petunia axillaris HOM05D002499 ORTHO05D002812 4.1e-06 55.8 79 30.4
CAN.G438.90 Capsicum annuum HOM05D002499 ORTHO05D002812 7.0e-06 55.1 79 30.4
Solyc03g120000.3 Solanum lycopersicum HOM05D002499 ORTHO05D002812 7.0e-06 55.1 79 30.4
Sopen03g038880 Solanum pennellii HOM05D002499 ORTHO05D002812 7.0e-06 55.1 79 30.4
PGSC0003DMG400005610 Solanum tuberosum HOM05D002499 ORTHO05D002812 7.0e-06 55.1 79 30.4


User provided reference genes

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