Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 0.0e+00 1735.3 869 100.0
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 0.0e+00 1118.6 876 65.4
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 1.8e-311 1072.4 873 62.8
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 5.9e-310 1067.4 923 59.6
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 1.3e-309 1066.2 874 62.5
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 5.3e-303 1044.3 876 60.2
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 5.3e-295 1017.7 876 59.5
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 2.0e-294 1015.8 884 59.2
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 1.0e-293 1013.4 876 59.1
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 8.5e-293 1010.4 876 59.0
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 6.1e-291 1004.2 877 56.8
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 1.2e-289 1000.0 877 56.8
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 2.6e-289 998.8 876 58.9
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 2.8e-288 995.3 877 58.5
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 1.7e-285 986.1 876 58.4
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 6.5e-285 984.2 873 57.4
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 1.2e-283 979.9 880 58.5
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 4.7e-283 978.0 877 57.7
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 8.0e-283 977.2 889 57.9
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 8.8e-282 973.8 876 57.3
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 1.5e-281 973.0 877 57.4
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 6.3e-280 967.6 881 56.9
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 2.5e-276 955.7 879 57.5
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 9.5e-276 953.7 874 56.3
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 4.7e-275 951.4 879 57.2
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.1e-275 951.0 874 56.2
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 1.4e-271 939.9 864 56.6
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 2.9e-269 932.2 875 56.1
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 1.9e-268 929.5 873 54.9
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 3.3e-268 928.7 893 54.1
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 4.3e-268 928.3 875 55.0
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 7.3e-268 927.5 874 54.9
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 9.5e-268 927.2 872 55.5
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 3.6e-267 925.2 865 56.0
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 8.0e-267 924.1 875 54.4
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 3.1e-266 922.2 877 55.2
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 8.9e-266 920.6 874 54.6
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 2.6e-265 919.1 884 55.7
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 6.4e-264 914.4 902 53.4
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 6.4e-264 914.4 856 56.1
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 3.9e-261 905.2 856 55.8
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 1.1e-260 903.7 877 53.6
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 1.9e-260 902.9 852 56.2
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 5.6e-260 901.4 762 59.3
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 7.3e-260 901.0 876 52.6
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 2.1e-259 899.4 871 55.5
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 4.0e-258 895.2 875 53.1
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 2.0e-257 892.9 856 55.3
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 4.9e-256 888.3 876 53.4
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 6.4e-256 887.9 875 54.1
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.1e-255 887.1 875 53.8
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 1.9e-255 886.3 836 54.1
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 1.6e-254 883.2 869 52.6
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 7.8e-254 880.9 879 51.4
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 9.5e-252 874.0 912 52.5
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 1.2e-251 873.6 876 52.3
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 1.1e-247 860.5 876 52.7
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 3.2e-247 859.0 775 58.3
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 2.1e-246 856.3 857 54.3
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 2.3e-245 852.8 895 50.9
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 8.6e-245 850.9 875 52.6
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 2.4e-242 842.8 874 51.3
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 1.5e-241 840.1 875 52.1
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 5.8e-241 838.2 864 51.2
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 3.8e-240 835.5 904 49.7
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 1.8e-234 816.6 878 50.3
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 6.9e-234 814.7 948 47.2
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 9.9e-233 810.8 912 49.2
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 1.9e-228 796.6 867 51.2
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 4.8e-227 792.0 846 49.2
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 8.1e-227 791.2 840 49.2
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 7.6e-225 784.6 892 49.4
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 1.3e-221 773.9 884 47.1
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 1.9e-220 770.0 872 50.2
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 1.9e-220 770.0 856 46.6
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 1.6e-219 766.9 886 49.5
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 2.9e-216 756.1 1333 37.7
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 3.8e-216 755.7 860 47.9
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.5e-215 753.1 886 49.0
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 7.9e-214 748.0 886 48.6
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 7.4e-212 741.5 857 48.9
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 1.4e-210 737.3 868 46.2
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.3e-204 716.1 868 48.2
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 6.5e-200 701.8 864 46.6
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 6.5e-200 701.8 864 46.6
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 1.6e-198 697.2 864 46.1
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 2.1e-198 696.8 864 46.1
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 2.1e-198 696.8 864 45.9
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 2.7e-198 696.4 870 45.7
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 2.5e-196 689.9 870 44.8
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 4.3e-196 689.1 871 45.4
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 5.7e-196 688.7 859 45.3
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 7.4e-196 688.3 859 45.5
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 2.8e-195 686.4 861 44.9
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 2.8e-195 686.4 859 45.4
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 1.1e-194 684.5 859 45.1
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 5.5e-191 672.2 885 45.1
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 7.2e-191 671.8 869 45.2
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 2.3e-189 666.8 833 44.4
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 2.3e-189 666.8 894 43.2
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 2.2e-187 660.2 1376 34.1
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 1.8e-186 657.1 761 48.2
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 5.3e-186 655.6 676 52.1
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 7.2e-183 645.2 856 43.2
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 7.2e-183 645.2 881 42.2
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 1.6e-182 644.0 874 43.5
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 2.4e-178 630.2 719 45.8
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 4.0e-173 612.8 890 41.2
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 6.8e-173 612.1 885 42.0
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 4.8e-171 605.9 527 59.2
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 1.1e-162 578.2 468 60.7
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 2.3e-160 570.5 574 54.5
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 4.0e-157 559.7 871 38.9
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 1.4e-149 534.6 414 63.5
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 1.9e-130 471.1 412 59.7
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.7e-128 464.5 339 66.7
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 8.9e-125 452.2 648 42.0
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 1.4e-117 428.3 323 63.8
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 8.4e-115 419.1 438 52.3
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 1.6e-105 388.3 316 62.0
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 6.0e-105 386.3 389 52.4
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 2.3e-104 384.4 1226 25.1
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 6.2e-102 376.3 384 55.5
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 1.1e-101 375.6 821 33.9
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 3.1e-101 374.0 794 32.2
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 4.9e-99 366.7 410 48.3
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 7.1e-98 362.8 357 56.6
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 4.8e-94 350.1 367 51.0
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 6.9e-93 346.3 363 49.9
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 3.5e-89 334.0 628 35.4
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.0e-88 330.9 453 42.4
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 1.1e-85 322.4 271 59.0
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 3.4e-84 317.4 478 38.5
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 3.4e-84 317.4 394 47.2
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.3e-72 278.1 351 43.6
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 5.1e-72 276.9 426 39.7
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 5.9e-68 263.5 513 35.1
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 2.2e-67 261.5 250 55.6
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 2.1e-65 255.0 182 64.8
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 2.4e-61 241.5 274 49.3
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 9.1e-61 239.6 280 45.4
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 1.9e-58 231.9 175 68.6
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 3.2e-58 231.1 178 62.4
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 4.1e-53 214.2 338 41.7
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 5.9e-52 210.3 334 38.9
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 2.8e-46 191.4 325 35.7
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 4.5e-44 184.1 351 32.2
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 5.0e-43 180.6 149 60.4
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 6.6e-43 180.3 139 64.7
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 1.8e-37 162.2 205 49.3
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 3.0e-35 154.8 196 45.4
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 5.6e-34 150.6 120 60.0
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 4.7e-33 147.5 157 47.8
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 1.4e-32 146.0 130 56.9
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 3.1e-32 144.8 198 47.0
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 1.2e-31 142.9 241 33.2
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 1.9e-29 135.6 100 68.0
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 4.1e-29 134.4 89 75.3
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 5.4e-29 134.0 129 52.7
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 9.2e-29 133.3 174 46.0
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 7.8e-28 130.2 157 45.9
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 5.0e-27 127.5 116 61.2
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 5.0e-27 127.5 88 65.9
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 8.6e-27 126.7 85 69.4
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 4.3e-26 124.4 127 48.0
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 2.0e-23 115.5 91 58.2
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 3.4e-23 114.8 80 71.2
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 4.9e-22 110.9 84 58.3
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 1.5e-18 99.4 148 40.5
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.5e-18 99.4 112 42.9
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.8e-17 95.1 166 36.7
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 4.0e-16 91.3 902 20.5
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 1.7e-14 85.9 91 46.2
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 4.9e-14 84.3 96 43.8
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 1.3e-11 76.3 84 48.8
QL01p054481 Quercus lobata HOM05D003469 ORTHO05D004084 1.7e-11 75.9 55 67.3
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 2.3e-11 75.5 137 40.1
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 4.3e-10 71.2 56 57.1
Lj9A422T78 Lonicera japonica HOM05D003469 ORTHO05D029064 9.6e-10 70.1 79 55.7
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.1e-08 66.6 41 70.7
Lsat_1_v5_gn_6_14080 Lactuca sativa HOM05D002718 ORTHO05D004084 2.4e-08 65.5 80 42.5
MD17G1140900 Malus domestica HOM05D003469 ORTHO05D004084 4.0e-08 64.7 73 54.8
Medtr4g074700 Medicago truncatula HOM05D003469 ORTHO05D004084 1.3e-06 59.7 100 34.0
Aa31LG2G17590 Aethionema arabicum HOM05D003469 ORTHO05D004084 1.7e-06 59.3 55 49.1


User provided reference genes

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