Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 4.2e-297 1023.8 496 100.0
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 3.0e-250 868.2 494 83.2
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 1.9e-249 865.5 496 83.1
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 2.1e-248 862.1 493 82.6
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 2.8e-248 861.7 494 84.6
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 3.6e-248 861.3 499 83.6
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 4.8e-248 860.9 497 83.3
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 3.1e-247 858.2 496 83.7
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 1.2e-246 856.3 495 83.4
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 2.0e-246 855.5 493 82.6
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 3.4e-246 854.7 495 83.2
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 5.8e-246 854.0 496 82.1
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 1.3e-245 852.8 495 82.4
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 3.8e-245 851.3 494 82.2
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 4.9e-245 850.9 498 81.5
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 6.4e-245 850.5 495 82.8
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 6.4e-245 850.5 490 83.5
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 1.4e-244 849.4 493 83.0
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 2.4e-244 848.6 494 82.6
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 4.2e-244 847.8 496 83.3
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 1.6e-243 845.9 489 83.6
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 2.1e-243 845.5 499 82.4
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 2.1e-243 845.5 499 82.4
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.1e-243 845.5 500 82.0
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 2.1e-243 845.5 496 82.7
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 6.0e-243 844.0 494 81.6
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 1.0e-242 843.2 495 81.6
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 1.0e-242 843.2 493 82.2
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 5.1e-242 840.9 499 80.6
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 6.7e-242 840.5 490 82.0
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.1e-241 839.7 491 81.7
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 1.1e-241 839.7 494 82.2
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 1.5e-241 839.3 493 80.5
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 4.3e-241 837.8 490 81.4
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 1.3e-240 836.3 493 81.1
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 6.2e-240 833.9 494 80.6
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 1.1e-239 833.2 474 82.7
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 1.8e-239 832.4 497 81.3
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 2.4e-239 832.0 474 82.5
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 2.4e-239 832.0 504 80.8
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 3.4e-238 828.2 498 80.5
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 5.8e-238 827.4 493 80.1
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 5.8e-238 827.4 495 80.2
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 5.8e-238 827.4 501 80.6
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 7.6e-238 827.0 496 79.0
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 1.0e-237 826.6 497 79.9
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 1.3e-237 826.2 495 79.6
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 6.5e-237 823.9 497 79.9
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 8.4e-237 823.5 494 80.2
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 8.4e-237 823.5 494 81.4
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 1.4e-236 822.8 494 79.4
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 3.2e-236 821.6 495 79.6
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 4.2e-236 821.2 491 79.0
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 7.1e-236 820.5 494 79.4
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 1.2e-235 819.7 493 78.9
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 1.6e-235 819.3 499 81.2
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 2.7e-235 818.5 489 79.6
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 3.5e-235 818.1 492 80.3
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 4.6e-235 817.8 486 80.2
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 6.0e-235 817.4 497 78.7
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 1.0e-234 816.6 497 79.9
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 1.8e-234 815.8 489 79.1
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 1.8e-234 815.8 493 78.7
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 1.8e-234 815.8 495 79.4
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 2.3e-234 815.5 496 78.8
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 2.3e-234 815.5 494 78.9
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 3.0e-234 815.1 494 79.4
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 6.7e-234 813.9 496 78.6
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 1.9e-233 812.4 486 80.0
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 2.5e-233 812.0 495 79.2
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 4.3e-233 811.2 498 77.7
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 4.3e-233 811.2 497 77.9
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 5.7e-233 810.8 495 78.4
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 7.4e-233 810.4 489 80.0
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 9.6e-233 810.1 460 83.0
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 1.6e-232 809.3 498 78.3
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 1.6e-232 809.3 498 77.3
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 3.7e-232 808.1 457 82.9
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 4.8e-232 807.7 494 77.7
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 1.1e-231 806.6 502 78.3
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 1.1e-231 806.6 504 77.4
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 3.1e-231 805.1 509 78.4
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 3.1e-231 805.1 494 78.9
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 5.3e-231 804.3 497 77.3
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 6.9e-231 803.9 477 80.5
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 2.0e-230 802.4 471 81.1
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 5.9e-230 800.8 495 78.6
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 5.9e-230 800.8 494 79.4
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 7.6e-230 800.4 494 78.1
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 1.0e-229 800.0 495 78.0
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 1.7e-229 799.3 474 80.2
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 5.0e-229 797.7 496 77.8
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 6.5e-229 797.3 494 77.3
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 8.4e-229 797.0 494 77.7
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 9.3e-228 793.5 494 78.1
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 4.6e-227 791.2 495 77.0
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 3.9e-226 788.1 494 77.1
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 1.6e-219 766.1 491 76.8
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.1e-217 760.0 519 74.2
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 8.2e-216 753.8 490 74.3
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 4.1e-215 751.5 519 71.9
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 5.3e-215 751.1 522 72.6
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 1.8e-207 726.1 474 74.7
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 7.0e-207 724.2 495 71.7
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 4.5e-206 721.5 495 71.9
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 3.6e-203 711.8 499 71.9
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 5.2e-202 708.0 483 70.6
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 8.8e-202 707.2 483 71.4
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 2.6e-201 705.7 520 70.2
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 7.2e-196 687.6 402 80.3
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 1.2e-195 686.8 487 70.0
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 5.7e-193 677.9 487 67.4
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 2.0e-190 669.5 498 68.5
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 2.8e-179 632.5 471 67.9
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 3.1e-170 602.4 381 73.5
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 3.7e-168 595.5 382 73.0
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 5.4e-167 591.7 472 64.0
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 1.3e-165 587.0 495 62.2
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 9.6e-148 527.7 434 63.8
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 4.9e-144 515.4 319 76.5
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 3.4e-137 492.7 319 74.0
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 1.7e-136 490.3 425 59.3
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 6.4e-136 488.4 488 52.5
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 2.1e-134 483.4 296 78.7
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 4.6e-134 482.3 306 74.8
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 1.5e-132 477.2 290 78.6
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 6.2e-123 445.3 319 68.7
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 1.0e-109 401.4 255 76.5
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 5.7e-100 369.0 226 79.6
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 7.2e-95 352.1 243 69.5
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 7.2e-95 352.1 243 69.5
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 6.3e-91 339.0 428 45.8
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 9.4e-87 325.1 194 82.5
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 4.0e-85 319.7 482 42.3
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 4.0e-77 293.1 443 42.2
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 1.3e-72 278.1 180 73.9
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 2.3e-72 277.3 148 83.8
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 8.6e-72 275.4 180 73.3
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 1.5e-60 238.0 164 68.3
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 7.5e-60 235.7 164 67.7
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 1.3e-48 198.4 110 81.8
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 1.3e-48 198.4 110 81.8
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 6.0e-41 172.9 126 67.5
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 1.6e-38 164.9 97 80.4
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 4.7e-38 163.3 95 89.5
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 5.2e-37 159.8 105 69.5
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 5.1e-32 143.3 81 79.0
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 2.0e-28 131.3 84 73.8
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 2.6e-28 131.0 77 79.2
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 6.2e-22 109.8 135 42.2
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 1.8e-21 108.2 66 71.2
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 7.6e-20 102.8 56 80.4
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 1.9e-15 88.2 72 65.3
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 2.5e-15 87.8 72 65.3
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 2.5e-15 87.8 72 65.3
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 1.6e-14 85.1 79 54.4
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 1.1e-13 82.4 45 75.6
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 2.9e-11 74.3 46 76.1
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 2.1e-09 68.2 34 79.4
SGA_v2.0_scaffold66G22476 Striga asiatica HOM05D004186 ORTHO05D405288 3.0e-08 64.3 37 81.1
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 2.5e-07 61.2 35 80.0
C07p46470 Brassica napus HOM05D001159 ORTHO05D011383 5.6e-07 60.1 59 54.2
C09p03000 Brassica napus HOM05D001159 ORTHO05D011383 1.3e-06 58.9 59 54.2
BolC9t53230H Brassica oleracea HOM05D001159 ORTHO05D011383 1.3e-06 58.9 59 54.2
Lsat_1_v5_gn_0_38501 Lactuca sativa HOM05D002067 ORTHO05D002244 2.1e-06 58.2 40 62.5
BcaC05g27566 Brassica carinata HOM05D001159 ORTHO05D011383 8.2e-06 56.2 59 52.5
C05p35490 Brassica napus HOM05D001159 ORTHO05D011383 8.2e-06 56.2 59 52.5


User provided reference genes

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