Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G01035 Eucalyptus grandis HOM05D003953 ORTHO05D004618 5.3e-43 177.2 83 100.0
Eucgr.G01038 Eucalyptus grandis HOM05D003953 ORTHO05D004618 1.3e-25 119.4 76 76.3
Lj6g0017568 Lotus japonicus HOM05D003953 ORTHO05D004618 2.0e-21 105.5 66 69.7
Lj1g0022776 Lotus japonicus HOM05D003953 ORTHO05D004618 4.4e-21 104.4 66 68.2
Manes.01G166500 Manihot esculenta HOM05D003953 ORTHO05D004618 3.7e-20 101.3 62 72.6
Gohir.A03G047300 Gossypium hirsutum HOM05D003953 ORTHO05D004618 4.8e-20 100.9 62 71.0
ClCG03G002440 Citrullus lanatus HOM05D003953 ORTHO05D004618 6.3e-20 100.5 66 69.7
Duzib150G0459 Durio zibethinus HOM05D003953 ORTHO05D004618 6.3e-20 100.5 62 71.0
CsaV3_1G013120 Cucumis sativus L. HOM05D003953 ORTHO05D004618 8.2e-20 100.1 66 69.7
Potri.001G246600 Populus trichocarpa HOM05D003953 ORTHO05D004618 8.2e-20 100.1 65 70.8
GSVIVG01024830001 Vitis vinifera HOM05D003953 ORTHO05D004618 8.2e-20 100.1 66 69.7
Gohir.D09G041350 Gossypium hirsutum HOM05D003953 ORTHO05D004618 1.1e-19 99.8 73 61.6
Gorai.003G126400 Gossypium raimondii HOM05D003953 ORTHO05D004618 1.1e-19 99.8 62 69.4
Ciclev10029631m.g Citrus clementina HOM05D003953 ORTHO05D004618 1.4e-19 99.4 60 73.3
Gohir.D03G119900 Gossypium hirsutum HOM05D003953 ORTHO05D004618 1.4e-19 99.4 62 67.7
Eucgr.G01031 Eucalyptus grandis HOM05D003953 ORTHO05D004618 2.4e-19 98.6 50 94.0
Gorai.004G180400 Gossypium raimondii HOM05D003953 ORTHO05D004618 2.4e-19 98.6 62 69.4
Gorai.006G047400 Gossypium raimondii HOM05D003953 ORTHO05D004618 2.4e-19 98.6 62 69.4
Gorai.008G072300 Gossypium raimondii HOM05D003953 ORTHO05D004618 2.4e-19 98.6 62 69.4
arahy.Tifrunner.gnm1.ann1.4A8T0Q Arachis hypogaea HOM05D003953 ORTHO05D004618 4.1e-19 97.8 57 75.4
arahy.Tifrunner.gnm1.ann1.DA7VUD Arachis hypogaea HOM05D003953 ORTHO05D004618 4.1e-19 97.8 57 75.4
arahy.Tifrunner.gnm1.ann1.DBQJ9M Arachis hypogaea HOM05D003953 ORTHO05D004618 4.1e-19 97.8 57 75.4
arahy.Tifrunner.gnm1.ann1.X5K85D Arachis hypogaea HOM05D003953 ORTHO05D004618 4.1e-19 97.8 57 75.4
Haze_19301 Corylus avellana HOM05D003953 ORTHO05D004618 4.1e-19 97.8 65 66.2
Sabra16G0149700 Salix brachista HOM05D003953 ORTHO05D004618 4.1e-19 97.8 65 67.7
Glyma.18G281100 Glycine max HOM05D003953 ORTHO05D004618 5.3e-19 97.4 57 75.4
Gohir.D09G041300 Gossypium hirsutum HOM05D003953 ORTHO05D004618 5.3e-19 97.4 62 67.7
CsaV3_1G035860 Cucumis sativus L. HOM05D003953 ORTHO05D004618 7.0e-19 97.1 65 67.7
Gohir.D04G155200 Gossypium hirsutum HOM05D003953 ORTHO05D004618 7.0e-19 97.1 62 67.7
MBI04_g47172_MAGBIO Magnolia biondii HOM05D003953 ORTHO05D004618 7.0e-19 97.1 74 64.9
Phvul.008G020000 Phaseolus vulgaris HOM05D003953 ORTHO05D004618 7.0e-19 97.1 57 75.4
Duzib168G1059 Durio zibethinus HOM05D003953 ORTHO05D004618 9.1e-19 96.7 62 69.4
Gohir.A08G112100 Gossypium hirsutum HOM05D003953 ORTHO05D004618 9.1e-19 96.7 62 67.7
Gorai.011G189400 Gossypium raimondii HOM05D003953 ORTHO05D004618 9.1e-19 96.7 62 67.7
CiPaw.13G084200 Carya illinoinensis HOM05D003953 ORTHO05D004618 1.2e-18 96.3 65 66.2
ClCG03G001080 Citrullus lanatus HOM05D003953 ORTHO05D004618 1.2e-18 96.3 57 75.4
Cc09_g02060 Coffea canephora HOM05D003953 ORTHO05D004618 1.2e-18 96.3 61 68.9
Gohir.D11G224100 Gossypium hirsutum HOM05D003953 ORTHO05D004618 1.2e-18 96.3 57 73.7
Oeu042438.1 Olea europaea HOM05D003953 ORTHO05D004618 1.2e-18 96.3 65 67.7
Psat3g190320 Pisum sativum HOM05D003953 ORTHO05D004618 1.2e-18 96.3 66 66.7
arahy.Tifrunner.gnm1.ann1.6EI814 Arachis hypogaea HOM05D003953 ORTHO05D004618 1.6e-18 95.9 57 73.7
Gohir.D05G283601 Gossypium hirsutum HOM05D003953 ORTHO05D004618 1.6e-18 95.9 62 67.7
Gohir.D05G283900 Gossypium hirsutum HOM05D003953 ORTHO05D004618 1.6e-18 95.9 62 67.7
Gorai.009G298400 Gossypium raimondii HOM05D003953 ORTHO05D004618 1.6e-18 95.9 62 67.7
PGR102G1512 Punica granatum HOM05D003953 ORTHO05D004618 1.6e-18 95.9 63 71.4
Nitab4.5_0000880g0090 Nicotiana tabacum HOM05D003953 ORTHO05D004618 2.0e-18 95.5 61 67.2
Nitab4.5_0002405g0070 Nicotiana tabacum HOM05D003953 ORTHO05D004618 2.0e-18 95.5 61 67.2
TPR.G3298 Trifolium pratense HOM05D003953 ORTHO05D004618 2.0e-18 95.5 69 65.2
Gohir.D07G180600 Gossypium hirsutum HOM05D003953 ORTHO05D004618 3.5e-18 94.7 60 68.3
TWI75G1138 Tripterygium wilfordii HOM05D003953 ORTHO05D004618 3.5e-18 94.7 63 65.1
TWI79G0904 Tripterygium wilfordii HOM05D003953 ORTHO05D004618 4.5e-18 94.4 63 65.1
MSTRG.7467 Avicennia marina HOM05D003953 ORTHO05D004618 5.9e-18 94.0 62 66.1
Glyma.19G045500 Glycine max HOM05D003953 ORTHO05D004618 5.9e-18 94.0 57 71.9
Gohir.D07G180800 Gossypium hirsutum HOM05D003953 ORTHO05D004618 5.9e-18 94.0 62 66.1
Medtr7g020830 Medicago truncatula HOM05D003953 ORTHO05D004618 5.9e-18 94.0 60 70.0
Os12g0194700 Oryza sativa ssp. japonica HOM05D003953 ORTHO05D004618 5.9e-18 94.0 71 60.6
TPR.G4479 Trifolium pratense HOM05D003953 ORTHO05D004618 5.9e-18 94.0 65 66.2
TAR369G1135 Trochodendron aralioides HOM05D003953 ORTHO05D004618 5.9e-18 94.0 63 68.3
CANSAT54G2674 Cannabis sativa HOM05D003953 ORTHO05D004618 7.7e-18 93.6 62 64.5
Gohir.A06G083400 Gossypium hirsutum HOM05D003953 ORTHO05D004618 7.7e-18 93.6 57 71.9
Thecc.09G309300 Theobroma cacao HOM05D003953 ORTHO05D004618 7.7e-18 93.6 75 58.7
TAR623G0256 Trochodendron aralioides HOM05D003953 ORTHO05D004618 7.7e-18 93.6 64 67.2
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 7.7e-18 93.6 57 71.9
Cfa020872 Carpinus fangiana HOM05D003953 ORTHO05D004618 1.0e-17 93.2 63 65.1
Dinv06204 Davidia involucrata HOM05D003953 ORTHO05D004618 1.0e-17 93.2 57 71.9
Gohir.A06G113000 Gossypium hirsutum HOM05D003953 ORTHO05D004618 1.0e-17 93.2 62 66.1
Gohir.A06G119302 Gossypium hirsutum HOM05D003953 ORTHO05D004618 1.0e-17 93.2 62 66.1
Gohir.A12G147900 Gossypium hirsutum HOM05D003953 ORTHO05D004618 1.0e-17 93.2 62 66.1
Gohir.D04G005500 Gossypium hirsutum HOM05D003953 ORTHO05D004618 1.0e-17 93.2 62 66.1
Gohir.D07G184100 Gossypium hirsutum HOM05D003953 ORTHO05D004618 1.0e-17 93.2 62 66.1
Hma1.2p1_0274F.1_g110300 Hydrangea macrophylla HOM05D003953 ORTHO05D004618 1.0e-17 93.2 57 71.9
Cfa011625 Carpinus fangiana HOM05D003953 ORTHO05D004618 1.3e-17 92.8 63 63.5
CDE05G3507 Ceratophyllum demersum HOM05D003953 ORTHO05D004618 1.3e-17 92.8 66 63.6
Migut.M00943 Erythranthe guttata HOM05D003953 ORTHO05D004618 1.3e-17 92.8 61 65.6
FAN03G1864 Fragaria x ananassa HOM05D003953 ORTHO05D004618 1.3e-17 92.8 62 64.5
Nn2g13557 Nelumbo nucifera HOM05D003953 ORTHO05D004618 1.3e-17 92.8 66 63.6
CSS0034778 Camellia sinensis var. sinensis HOM05D003953 ORTHO05D004618 1.7e-17 92.4 57 71.9
FvH4_7g06540 Fragaria vesca HOM05D003953 ORTHO05D004618 1.7e-17 92.4 62 64.5
FAN01G1905 Fragaria x ananassa HOM05D003953 ORTHO05D004618 1.7e-17 92.4 62 64.5
FAN10G1677 Fragaria x ananassa HOM05D003953 ORTHO05D004618 1.7e-17 92.4 62 64.5
Oeu001049.1 Olea europaea HOM05D003953 ORTHO05D004618 1.7e-17 92.4 61 65.6
Peaxi162Scf00123g01014 Petunia axillaris HOM05D003953 ORTHO05D004618 1.7e-17 92.4 61 67.2
Lalb_Chr21g0317911 Lupinus albus HOM05D003953 ORTHO05D004618 2.2e-17 92.0 61 68.9
Prupe.2G047700 Prunus persica HOM05D003953 ORTHO05D004618 2.2e-17 92.0 63 63.5
Atru.chr3.4044 Acer truncatum HOM05D003953 ORTHO05D004618 2.9e-17 91.7 58 72.4
SalBow8G2167 Salvia bowleyana HOM05D003953 ORTHO05D004618 2.9e-17 91.7 61 65.6
SalBow8G3221 Salvia bowleyana HOM05D003953 ORTHO05D004618 2.9e-17 91.7 61 65.6
Sopen06g001840 Solanum pennellii HOM05D003953 ORTHO05D004618 2.9e-17 91.7 55 70.9
ATR1136G184 Amborella trichopoda HOM05D003953 ORTHO05D004618 3.8e-17 91.3 61 67.2
CDE05G2370 Ceratophyllum demersum HOM05D003953 ORTHO05D004618 3.8e-17 91.3 66 62.1
Haze_24228 Corylus avellana HOM05D003953 ORTHO05D004618 3.8e-17 91.3 63 61.9
Nitab4.5_0002142g0080 Nicotiana tabacum HOM05D003953 ORTHO05D004618 3.8e-17 91.3 61 63.9
Sed0019378 Sechium edule HOM05D003953 ORTHO05D004618 3.8e-17 91.3 66 63.6
unitig_92.g28151 Utricularia gibba HOM05D003953 ORTHO05D004618 3.8e-17 91.3 57 68.4
SalBow1G5086 Salvia bowleyana HOM05D003953 ORTHO05D004618 5.0e-17 90.9 61 65.6
Zm00001eb169140 Zea mays HOM05D003953 ORTHO05D004618 5.0e-17 90.9 66 59.1
HanXRQChr09g0262301 Helianthus annuus HOM05D003953 ORTHO05D004618 6.5e-17 90.5 62 62.9
Hma1.2p1_0543F.1_g175312 Hydrangea macrophylla HOM05D003953 ORTHO05D004618 6.5e-17 90.5 55 70.9
Hma1.2p1_0543F.1_g175340 Hydrangea macrophylla HOM05D003953 ORTHO05D004618 6.5e-17 90.5 55 70.9
RcHm_v2.0_Chr1g0334971 Rosa chinensis HOM05D003953 ORTHO05D004618 6.5e-17 90.5 62 62.9
RcHm_v2.0_Chr2g0128821 Rosa chinensis HOM05D003953 ORTHO05D004618 6.5e-17 90.5 57 68.4
Sed0025309 Sechium edule HOM05D003953 ORTHO05D004618 6.5e-17 90.5 66 62.1
COL.COLO4_19069 Corchorus olitorius HOM05D003953 ORTHO05D004618 1.1e-16 89.7 57 70.2
SGA_v2.0_scaffold44G16545 Striga asiatica HOM05D003953 ORTHO05D004618 1.1e-16 89.7 61 67.2
ECA248G2580 Erigeron canadensis HOM05D003953 ORTHO05D004618 1.5e-16 89.4 62 62.9
Aqoxy128s009 Aquilegia oxysepala HOM05D003953 ORTHO05D004618 1.9e-16 89.0 60 65.0
Prupe.3G125300 Prunus persica HOM05D003953 ORTHO05D004618 1.9e-16 89.0 59 67.8
PGSC0003DMG400013346 Solanum tuberosum HOM05D003953 ORTHO05D004618 1.9e-16 89.0 61 63.9
THA.LOC104800713 Tarenaya hassleriana HOM05D003953 ORTHO05D004618 1.9e-16 89.0 62 66.1
vmacro03011 Vaccinium macrocarpon HOM05D003953 ORTHO05D004618 1.9e-16 89.0 57 68.4
Dinv34318 Davidia involucrata HOM05D003953 ORTHO05D004618 2.5e-16 88.6 52 73.1
MD10G1078400 Malus domestica HOM05D003953 ORTHO05D004618 2.5e-16 88.6 59 64.4
SEGI_41348 Sequoiadendron giganteum HOM05D003953 ORTHO05D004618 3.2e-16 88.2 56 66.1
PGSC0003DMG400020825 Solanum tuberosum HOM05D003953 ORTHO05D004618 3.2e-16 88.2 55 69.1
DCAR_015642 Daucus carota HOM05D003953 ORTHO05D004618 4.2e-16 87.8 57 70.2
FAN02G2926 Fragaria x ananassa HOM05D003953 ORTHO05D004618 4.2e-16 87.8 65 58.5
FAN05G4346 Fragaria x ananassa HOM05D003953 ORTHO05D004618 4.2e-16 87.8 65 60.0
FAN06G2211 Fragaria x ananassa HOM05D003953 ORTHO05D004618 4.2e-16 87.8 73 56.2
Sc12g0001080 Simmondsia chinensis HOM05D003953 ORTHO05D004618 4.2e-16 87.8 62 64.5
CAN.G1186.33 Capsicum annuum HOM05D003953 ORTHO05D004618 5.5e-16 87.4 61 62.3
Rhsim13G0075300 Rhododendron simsii HOM05D003953 ORTHO05D004618 5.5e-16 87.4 57 66.7
Sopen11g006990 Solanum pennellii HOM05D003953 ORTHO05D004618 5.5e-16 87.4 61 63.9
Cpa.g.sc112.95 Carica papaya HOM05D003953 ORTHO05D004618 7.2e-16 87.0 62 59.7
FAN14G2908 Fragaria x ananassa HOM05D003953 ORTHO05D004618 9.4e-16 86.7 65 58.5
AUR62020054 Chenopodium quinoa HOM05D003953 ORTHO05D004618 1.2e-15 86.3 71 57.7
Lsat_1_v5_gn_5_168181 Lactuca sativa HOM05D003953 ORTHO05D004618 1.2e-15 86.3 57 63.2
Solyc11g012195.1 Solanum lycopersicum HOM05D003953 ORTHO05D004618 1.2e-15 86.3 61 62.3
AUR62001716 Chenopodium quinoa HOM05D003953 ORTHO05D004618 1.6e-15 85.9 65 60.0
EL10Ac7g16096 Beta vulgaris HOM05D003953 ORTHO05D004618 2.1e-15 85.5 65 58.5
HPP92_011695 Vanilla planifolia HOM05D003953 ORTHO05D004618 8.0e-15 83.6 60 60.0
Phvul.004G063100 Phaseolus vulgaris HOM05D003953 ORTHO05D004618 1.0e-14 83.2 60 61.7
AagrBONN_evm.TU.Sc2ySwM_368.2434 Anthoceros agrestis HOM05D003953 ORTHO05D004618 1.4e-14 82.8 59 61.0
PSO339G2392 Papaver somniferum HOM05D003953 ORTHO05D004618 1.4e-14 82.8 63 60.3
PSO384G4465 Papaver somniferum HOM05D003953 ORTHO05D004618 1.4e-14 82.8 64 62.5
AagrBONN_evm.TU.Sc2ySwM_117.3970 Anthoceros agrestis HOM05D003953 ORTHO05D004618 1.8e-14 82.4 59 61.0
Lalb_Chr21g0317731 Lupinus albus HOM05D003953 ORTHO05D004618 1.8e-14 82.4 80 53.8
Ah.13g070310 Amaranthus hybridus HOM05D003953 ORTHO05D004618 3.0e-14 81.6 65 56.9
Hund03162 Selenicereus undatus HOM05D003953 ORTHO05D004618 4.0e-14 81.3 66 56.1
Hund04903 Selenicereus undatus HOM05D003953 ORTHO05D004618 5.2e-14 80.9 56 60.7
AagrBONN_evm.TU.Sc2ySwM_26.4 Anthoceros agrestis HOM05D003953 ORTHO05D004618 8.8e-14 80.1 58 60.3
AagrBONN_evm.TU.Sc2ySwM_287.2 Anthoceros agrestis HOM05D003953 ORTHO05D004618 8.8e-14 80.1 58 60.3
AagrBONN_evm.TU.Sc2ySwM_295.3 Anthoceros agrestis HOM05D003953 ORTHO05D004618 8.8e-14 80.1 59 59.3
C04p21300 Brassica napus HOM05D003953 ORTHO05D004618 8.8e-14 80.1 62 61.3
BolC4t23659H Brassica oleracea HOM05D003953 ORTHO05D004618 8.8e-14 80.1 62 61.3
Aa31LG5G6920 Aethionema arabicum HOM05D003953 ORTHO05D004618 1.2e-13 79.7 73 56.2
Mapoly0064s0065 Marchantia polymorpha HOM05D003953 ORTHO05D004618 2.0e-13 79.0 60 61.7
Pp3c3_11180 Physcomitrium patens HOM05D003953 ORTHO05D004618 2.6e-13 78.6 56 62.5
BcaB02g10260 Brassica carinata HOM05D003953 ORTHO05D004618 4.4e-13 77.8 62 59.7
A05p15860 Brassica napus HOM05D003953 ORTHO05D004618 4.4e-13 77.8 61 60.7
Sp4g12270 Schrenkiella parvula HOM05D003953 ORTHO05D004618 7.5e-13 77.0 55 67.3
A04p22530 Brassica napus HOM05D003953 ORTHO05D004618 1.3e-12 76.3 67 55.2
BraA04t17798Z Brassica rapa HOM05D003953 ORTHO05D004618 1.3e-12 76.3 67 55.2
Os11g0218100 Oryza sativa ssp. japonica HOM05D003953 ORTHO05D004618 3.7e-12 74.7 67 56.7
Thhalv10017434m.g Eutrema salsugineum HOM05D003953 ORTHO05D004618 1.1e-11 73.2 57 59.6
SMO228G0103 Selaginella moellendorffii HOM05D003953 ORTHO05D004618 2.4e-11 72.0 55 52.7
Mapoly0079s0034 Marchantia polymorpha HOM05D003953 ORTHO05D004618 5.4e-11 70.9 59 54.2
AL4G24250 Arabidopsis lyrata HOM05D003953 ORTHO05D004618 9.1e-11 70.1 57 56.1
BcaC02g08078 Brassica carinata HOM05D003953 ORTHO05D004618 9.1e-11 70.1 50 66.0
C04p58680 Brassica napus HOM05D003953 ORTHO05D004618 9.1e-11 70.1 50 66.0
AT2G29540 Arabidopsis thaliana HOM05D003953 ORTHO05D004618 2.0e-10 68.9 70 48.6
Carub.0004s1059 Capsella rubella HOM05D003953 ORTHO05D004618 4.5e-10 67.8 55 56.4
MCO07G039 Micromonas commoda HOM05D003953 ORTHO05D004618 2.9e-09 65.1 65 47.7
FAN09G1296 Fragaria x ananassa HOM05D003953 ORTHO05D004618 5.0e-09 64.3 119 32.8
Cre12.g484100 Chlamydomonas reinhardtii HOM05D003953 ORTHO05D004618 6.5e-09 63.9 57 52.6
Actinidia25120 Actinidia chinensis HOM05D003953 ORTHO05D004618 1.1e-08 63.2 56 57.1
CARHR122880 Cardamine hirsuta HOM05D003953 ORTHO05D004618 1.5e-08 62.8 55 52.7
GSVIVG01025946001 Vitis vinifera HOM05D004708 ORTHO05D005573 9.4e-08 60.1 41 65.9
PRCOL_00001819 Prasinoderma coloniale HOM05D003953 ORTHO05D004618 2.3e-06 55.5 56 44.6
QL01p028911 Quercus lobata HOM05D003953 ORTHO05D004618 6.8e-06 53.9 44 54.5
SMO351G0643 Selaginella moellendorffii HOM05D003953 ORTHO05D004618 8.8e-06 53.5 27 81.5


User provided reference genes

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