Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 4.3e-301 1037.3 569 100.0
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 4.3e-192 675.2 450 85.8
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 9.8e-189 664.1 568 64.4
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 5.6e-168 595.1 542 59.4
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 3.6e-167 592.4 534 58.2
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 3.1e-166 589.3 572 57.9
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 8.9e-166 587.8 566 56.2
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 5.8e-165 585.1 568 57.7
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 2.9e-164 582.8 563 56.0
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.5e-160 569.7 566 54.8
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 4.3e-160 568.9 578 55.4
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 5.8e-157 558.5 578 55.9
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 1.6e-154 550.4 567 55.7
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 4.6e-154 548.9 556 55.6
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.5e-152 543.9 566 53.4
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 7.3e-152 541.6 566 52.8
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 5.8e-149 531.9 540 55.2
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.9e-148 529.6 567 54.7
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 8.4e-148 528.1 563 54.4
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.8e-145 520.4 564 51.6
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 3.0e-145 519.6 566 51.2
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 5.1e-145 518.8 569 52.0
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 5.1e-145 518.8 564 52.5
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.5e-144 516.5 563 55.2
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 5.6e-144 515.4 574 53.1
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 1.5e-141 507.3 538 50.7
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 2.6e-141 506.5 566 50.9
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 1.7e-140 503.8 586 49.8
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 1.7e-140 503.8 537 52.5
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 2.9e-140 503.1 549 51.0
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 6.4e-140 501.9 566 50.4
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 8.4e-140 501.5 569 50.3
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 1.2e-138 497.7 600 48.8
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 3.5e-138 496.1 519 51.8
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.3e-137 494.2 537 50.7
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 3.0e-137 493.0 536 50.6
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 8.7e-137 491.5 537 50.8
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 1.1e-136 491.1 568 50.2
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 1.1e-136 491.1 559 49.7
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 1.1e-136 491.1 536 51.1
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 2.5e-136 490.0 574 50.3
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 4.3e-136 489.2 534 50.7
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 4.3e-136 489.2 568 50.4
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.3e-135 487.6 559 49.4
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 1.3e-135 487.6 536 52.4
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 3.7e-135 486.1 538 53.3
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 4.8e-135 485.7 534 52.6
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.8e-134 483.8 541 49.9
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 2.4e-134 483.4 538 50.9
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 6.9e-134 481.9 538 48.9
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 6.9e-134 481.9 538 48.9
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 6.9e-134 481.9 552 50.4
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 1.5e-133 480.7 538 49.8
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 1.5e-133 480.7 537 51.0
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 1.5e-133 480.7 564 48.6
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 2.0e-133 480.3 544 49.6
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 1.0e-132 478.0 574 47.0
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 1.0e-132 478.0 555 50.3
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 1.3e-132 477.6 570 49.5
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 8.4e-132 474.9 535 49.2
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 1.1e-131 474.6 538 49.3
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 1.9e-131 473.8 526 50.0
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 7.1e-131 471.9 468 54.7
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 1.6e-130 470.7 543 49.0
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 4.6e-130 469.2 535 48.4
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 1.3e-129 467.6 533 48.2
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.3e-129 467.6 556 49.3
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.5e-128 464.2 541 48.2
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 4.3e-128 462.6 531 46.0
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 7.4e-128 461.8 536 48.9
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 7.4e-128 461.8 533 48.6
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.3e-127 461.1 540 47.8
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 1.1e-126 458.0 544 48.5
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 1.4e-126 457.6 540 47.8
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 3.1e-126 456.4 581 47.5
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 1.3e-124 451.1 535 47.5
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 3.8e-124 449.5 565 48.7
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 5.0e-124 449.1 548 46.4
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 3.2e-123 446.4 569 46.0
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.2e-123 446.0 568 45.2
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 9.3e-123 444.9 538 49.4
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 2.3e-121 440.3 536 45.5
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 3.9e-121 439.5 535 46.2
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 8.2e-119 431.8 551 45.6
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.4e-118 430.3 545 49.0
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 3.1e-118 429.9 536 47.0
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 2.0e-117 427.2 547 43.7
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 1.1e-115 421.4 537 44.7
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 7.2e-115 418.7 427 53.6
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 6.1e-114 415.6 574 41.8
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 6.7e-113 412.1 532 44.5
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 6.7e-113 412.1 572 43.5
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.3e-112 409.8 390 57.4
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 3.3e-112 409.8 539 44.7
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 4.4e-112 409.5 537 42.8
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 7.4e-112 408.7 537 42.8
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 7.4e-112 408.7 572 43.4
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 2.2e-111 407.1 469 52.0
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 1.4e-110 404.4 539 44.3
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 1.8e-110 404.1 501 46.1
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 2.4e-110 403.7 536 42.2
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 3.1e-110 403.3 573 43.3
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 5.3e-110 402.5 537 42.3
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 6.9e-110 402.1 536 42.9
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 2.2e-108 397.1 534 42.3
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 3.8e-108 396.4 568 41.9
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 1.4e-107 394.4 537 42.1
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 1.4e-107 394.4 548 42.9
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 3.2e-107 393.3 532 42.7
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 3.2e-107 393.3 537 42.1
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 2.1e-106 390.6 555 43.6
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 5.2e-105 386.0 541 41.0
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 8.8e-105 385.2 536 41.0
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 2.6e-104 383.6 535 43.2
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 1.6e-98 364.4 548 42.5
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.6e-98 364.4 359 56.5
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 4.4e-96 356.3 556 39.6
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 5.9e-93 345.9 532 39.5
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 3.2e-91 340.1 438 45.7
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 2.7e-90 337.0 425 44.2
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 4.7e-90 336.3 343 53.1
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 6.8e-89 332.4 428 46.0
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 4.8e-87 326.2 262 66.0
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 1.2e-85 321.6 447 43.8
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 2.1e-82 310.8 256 63.7
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 2.3e-76 290.8 562 34.7
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 3.4e-72 276.9 529 36.3
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.3e-68 265.0 385 39.7
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.2e-66 258.5 420 38.3
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 3.2e-62 243.8 249 54.2
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.8e-58 230.7 324 44.1
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.7e-55 221.5 246 52.8
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 6.4e-47 193.0 402 35.6
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.0e-44 185.7 319 36.1
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.3e-44 185.3 245 46.9
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 4.7e-42 176.8 248 38.7
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 1.7e-39 168.3 536 26.1
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 2.9e-39 167.5 450 29.6
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.8e-39 167.2 148 60.8
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 6.4e-39 166.4 148 60.1
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 1.0e-36 159.1 564 26.6
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 2.3e-36 157.9 525 27.0
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 3.0e-36 157.5 157 57.3
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 9.6e-35 152.5 567 28.6
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 9.3e-30 136.0 138 51.4
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.2e-29 135.6 145 46.9
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 7.9e-29 132.9 162 49.4
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 7.4e-27 126.3 155 43.2
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.8e-26 124.4 175 40.0
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.8e-26 123.6 102 63.7
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 5.3e-25 120.2 161 36.0
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.6e-24 117.9 112 54.5
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 4.5e-24 117.1 551 24.5
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.1e-22 112.5 119 47.1
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.2e-21 109.0 154 40.3
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 2.7e-21 107.8 172 38.4
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 1.0e-20 105.9 174 32.8
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 5.6e-19 100.1 160 36.9
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 4.8e-18 97.1 101 52.5
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.4e-17 95.5 530 22.8
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 3.1e-17 94.4 135 38.5
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 2.0e-16 91.7 74 63.5
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 4.5e-16 90.5 85 60.0
GSVIVG01038756001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.5e-16 90.5 84 53.6
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 4.5e-16 90.5 116 40.5
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 6.5e-15 86.7 66 66.7
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 5.5e-14 83.6 123 43.1
AagrBONN_evm.TU.Sc2ySwM_228.1577 Anthoceros agrestis HOM05D003578 ORTHO05D004021 9.3e-14 82.8 372 22.0
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 9.3e-14 82.8 204 25.0
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 2.1e-13 81.6 71 62.0
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 3.5e-13 80.9 73 56.2
Pp3c11_11580 Physcomitrium patens HOM05D003578 ORTHO05D004021 7.9e-13 79.7 462 22.3
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.0e-12 79.3 134 38.8
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 1.1e-11 75.9 116 44.0
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 4.3e-11 73.9 81 45.7
ATR0686G029 Amborella trichopoda HOM05D003578 ORTHO05D004021 3.1e-09 67.8 111 37.8
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 9.0e-09 66.2 64 54.7
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 9.0e-09 66.2 64 54.7
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 2.0e-08 65.1 84 35.7
GSVIVG01023070001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.5e-08 63.9 76 44.7
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 5.9e-08 63.5 61 54.1
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.9e-07 61.2 125 32.8


User provided reference genes

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