Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G00523 Eucalyptus grandis HOM05D003177 ORTHO05D003481 1.2e-175 619.8 322 100.0
Eucgr.F03427 Eucalyptus grandis HOM05D003177 ORTHO05D003481 6.0e-127 458.0 253 96.0
TAR629G1976 Trochodendron aralioides HOM05D003177 ORTHO05D003481 1.5e-80 303.9 232 65.9
Potri.001G417400 Populus trichocarpa HOM05D003177 ORTHO05D003481 1.6e-79 300.4 253 62.1
QL08p013320 Quercus lobata HOM05D003177 ORTHO05D003481 1.8e-78 297.0 284 58.1
Prupe.4G202300 Prunus persica HOM05D003177 ORTHO05D003481 1.2e-77 294.3 232 63.8
CiPaw.11G183800 Carya illinoinensis HOM05D003177 ORTHO05D003481 2.2e-76 290.0 266 57.9
CSS0012105 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 9.2e-75 284.6 231 62.8
Cpa.g.sc97.68 Carica papaya HOM05D003177 ORTHO05D003481 2.7e-74 283.1 232 62.9
RcHm_v2.0_Chr5g0037561 Rosa chinensis HOM05D003177 ORTHO05D003481 4.5e-74 282.3 225 64.0
Manes.03G122901 Manihot esculenta HOM05D003177 ORTHO05D003481 1.3e-73 280.8 237 62.0
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.3e-73 280.0 237 59.5
RcHm_v2.0_Chr4g0410111 Rosa chinensis HOM05D003177 ORTHO05D003481 2.3e-73 280.0 225 63.1
FvH4_7g08040 Fragaria vesca HOM05D003177 ORTHO05D003481 3.8e-73 279.3 230 60.9
FAN25G3665 Fragaria x ananassa HOM05D003177 ORTHO05D003481 6.6e-73 278.5 238 58.0
Sc19g0005940 Simmondsia chinensis HOM05D003177 ORTHO05D003481 8.6e-73 278.1 241 59.3
FvH4_3g21820 Fragaria vesca HOM05D003177 ORTHO05D003481 1.1e-72 277.7 238 58.8
TWI39G1173 Tripterygium wilfordii HOM05D003177 ORTHO05D003481 1.9e-72 276.9 244 59.4
Cc05_g13250 Coffea canephora HOM05D003177 ORTHO05D003481 2.5e-72 276.6 231 61.9
Duzib213G0670 Durio zibethinus HOM05D003177 ORTHO05D003481 2.5e-72 276.6 236 61.0
FAN21G3709 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.5e-72 276.6 245 58.0
Lj1C863T22 Lonicera japonica HOM05D003177 ORTHO05D003481 3.3e-72 276.2 227 63.4
DCAR_008676 Daucus carota HOM05D003177 ORTHO05D003481 7.3e-72 275.0 253 58.1
Haze_09611 Corylus avellana HOM05D003177 ORTHO05D003481 9.5e-72 274.6 231 61.5
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 2.1e-71 273.5 240 59.2
MD03G1211600 Malus domestica HOM05D003177 ORTHO05D003481 8.0e-71 271.6 241 58.5
Duzib268G0600 Durio zibethinus HOM05D003177 ORTHO05D003481 1.8e-70 270.4 240 59.2
GSVIVG01014607001 Vitis vinifera HOM05D003177 ORTHO05D003481 4.0e-70 269.2 240 60.8
Eucgr.H00088 Eucalyptus grandis HOM05D003177 ORTHO05D003481 1.5e-69 267.3 148 97.3
COL.COLO4_09572 Corchorus olitorius HOM05D003177 ORTHO05D003481 2.6e-69 266.5 232 59.5
FAN03G0141 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.6e-69 266.5 257 56.0
Ciclev10008545m.g Citrus clementina HOM05D003177 ORTHO05D003481 3.4e-69 266.2 250 56.4
Nitab4.5_0009192g0010 Nicotiana tabacum HOM05D003177 ORTHO05D003481 9.8e-69 264.6 238 57.6
ECA246G0280 Erigeron canadensis HOM05D003177 ORTHO05D003481 2.2e-68 263.5 240 56.2
Peaxi162Scf01086g00156 Petunia axillaris HOM05D003177 ORTHO05D003481 2.2e-68 263.5 241 56.0
Migut.H01856 Erythranthe guttata HOM05D003177 ORTHO05D003481 2.9e-68 263.1 277 50.5
Sed0011648 Sechium edule HOM05D003177 ORTHO05D003481 1.1e-67 261.2 289 50.5
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 1.8e-67 260.4 238 56.7
Ah.06g183030 Amaranthus hybridus HOM05D003177 ORTHO05D003481 2.4e-67 260.0 238 57.6
Solyc07g064110.3 Solanum lycopersicum HOM05D003177 ORTHO05D003481 7.0e-67 258.5 241 55.6
Sopen07g032250 Solanum pennellii HOM05D003177 ORTHO05D003481 7.0e-67 258.5 244 56.1
arahy.Tifrunner.gnm1.ann1.2TAV4H Arachis hypogaea HOM05D003177 ORTHO05D003481 1.6e-66 257.3 249 54.6
arahy.Tifrunner.gnm1.ann1.LL10MS Arachis hypogaea HOM05D003177 ORTHO05D003481 1.6e-66 257.3 249 54.6
PGR031G3084 Punica granatum HOM05D003177 ORTHO05D003481 1.6e-66 257.3 233 57.9
FAN01G1176 Fragaria x ananassa HOM05D003177 ORTHO05D003481 4.6e-66 255.8 201 63.7
PGSC0003DMG400019225 Solanum tuberosum HOM05D003177 ORTHO05D003481 5.9e-66 255.4 248 54.8
FAN11G2546 Fragaria x ananassa HOM05D003177 ORTHO05D003481 7.8e-66 255.0 271 51.3
FAN06G1056 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.0e-65 254.6 207 61.8
Nn1g03661 Nelumbo nucifera HOM05D003177 ORTHO05D003481 3.0e-65 253.1 237 56.5
MSTRG.14415 Avicennia marina HOM05D003177 ORTHO05D003481 6.6e-65 251.9 238 55.5
Gohir.D01G061200 Gossypium hirsutum HOM05D003177 ORTHO05D003481 6.6e-65 251.9 243 55.6
AUR62015646 Chenopodium quinoa HOM05D003177 ORTHO05D003481 1.9e-64 250.4 230 57.0
CAN.G337.147 Capsicum annuum HOM05D003177 ORTHO05D003481 3.3e-64 249.6 226 55.8
Gorai.002G082600 Gossypium raimondii HOM05D003177 ORTHO05D003481 3.3e-64 249.6 243 54.7
CsaV3_UNG229000 Cucumis sativus L. HOM05D003177 ORTHO05D003481 2.8e-63 246.5 242 55.8
CsaV3_3G022860 Cucumis sativus L. HOM05D003177 ORTHO05D003481 3.6e-63 246.1 247 55.1
EL10Ac4g07970 Beta vulgaris HOM05D003177 ORTHO05D003481 4.7e-63 245.7 252 54.0
Gohir.A01G074600 Gossypium hirsutum HOM05D003177 ORTHO05D003481 4.7e-63 245.7 243 53.9
Actinidia35317 Actinidia chinensis HOM05D003177 ORTHO05D003481 8.0e-63 245.0 243 55.1
Cfa020414 Carpinus fangiana HOM05D003177 ORTHO05D003481 8.0e-63 245.0 284 50.7
TPR.G25924 Trifolium pratense HOM05D003177 ORTHO05D003481 2.3e-62 243.4 230 54.8
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 4.0e-62 242.7 224 57.6
ClCG05G014770 Citrullus lanatus HOM05D003177 ORTHO05D003481 6.8e-62 241.9 255 54.1
PSO541G2106 Papaver somniferum HOM05D003177 ORTHO05D003481 1.5e-61 240.7 234 53.8
Psat7g161600 Pisum sativum HOM05D003177 ORTHO05D003481 1.5e-61 240.7 243 52.7
Medtr4g081220 Medicago truncatula HOM05D003177 ORTHO05D003481 2.0e-61 240.4 225 56.0
Glyma.12G135500 Glycine max HOM05D003177 ORTHO05D003481 2.6e-61 240.0 241 53.5
SGA_v2.0_scaffold9G05037 Striga asiatica HOM05D003177 ORTHO05D003481 2.6e-61 240.0 237 51.1
Phvul.011G140050 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 4.4e-61 239.2 245 52.2
Aqoxy4G02069 Aquilegia oxysepala HOM05D003177 ORTHO05D003481 5.8e-61 238.8 243 52.7
Lj3g0020379 Lotus japonicus HOM05D003177 ORTHO05D003481 9.8e-61 238.0 242 52.9
Thhalv10024397m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 1.3e-60 237.7 243 49.4
VMungo1127G0069 Vigna mungo HOM05D003177 ORTHO05D003481 1.3e-60 237.7 252 51.6
Glyma.06G268800 Glycine max HOM05D003177 ORTHO05D003481 2.2e-60 236.9 300 46.0
AL6G48280 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 4.9e-60 235.7 250 48.4
MELO3C018128.2 Cucumis melo HOM05D003177 ORTHO05D003481 4.9e-60 235.7 225 56.4
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 1.1e-59 234.6 298 44.6
Sed0011296 Sechium edule HOM05D003177 ORTHO05D003481 3.2e-59 233.0 257 49.8
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 4.1e-59 232.6 237 48.1
CARHR252740 Cardamine hirsuta HOM05D003177 ORTHO05D003481 4.1e-59 232.6 235 49.8
AT4G04790 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 5.4e-59 232.3 238 49.2
BcaC04g21326 Brassica carinata HOM05D003177 ORTHO05D003481 7.0e-59 231.9 237 49.8
Actinidia10706 Actinidia chinensis HOM05D003177 ORTHO05D003481 9.2e-59 231.5 185 63.8
AL7G32020 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 9.2e-59 231.5 245 47.8
PSO675G6436 Papaver somniferum HOM05D003177 ORTHO05D003481 9.2e-59 231.5 234 52.1
A01p13180 Brassica napus HOM05D003177 ORTHO05D003481 1.2e-58 231.1 237 48.5
Lalb_Chr19g0134751 Lupinus albus HOM05D003177 ORTHO05D003481 1.6e-58 230.7 252 50.4
THA.LOC104813041 Tarenaya hassleriana HOM05D003177 ORTHO05D003481 1.6e-58 230.7 238 49.6
AT4G21880 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 2.0e-58 230.3 245 46.5
BcaC09g51192 Brassica carinata HOM05D003177 ORTHO05D003481 2.0e-58 230.3 237 47.3
BraA01t01262Z Brassica rapa HOM05D003177 ORTHO05D003481 2.7e-58 229.9 249 46.6
BcaB01g01838 Brassica carinata HOM05D003177 ORTHO05D003481 1.0e-57 228.0 231 50.6
CARHR228640 Cardamine hirsuta HOM05D003177 ORTHO05D003481 1.0e-57 228.0 224 49.6
Thhalv10028431m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 1.0e-57 228.0 237 49.4
Sp6g04150 Schrenkiella parvula HOM05D003177 ORTHO05D003481 1.7e-57 227.3 235 49.8
BolC1t01542H Brassica oleracea HOM05D003177 ORTHO05D003481 5.0e-57 225.7 298 40.6
Carub.0006s3271 Capsella rubella HOM05D003177 ORTHO05D003481 5.0e-57 225.7 238 49.6
C09p33110 Brassica napus HOM05D003177 ORTHO05D003481 8.6e-57 224.9 244 48.4
BolC9t56146H Brassica oleracea HOM05D003177 ORTHO05D003481 8.6e-57 224.9 244 48.4
CDE12G0546 Ceratophyllum demersum HOM05D003177 ORTHO05D003481 2.5e-56 223.4 246 48.8
HPP92_004136 Vanilla planifolia HOM05D003177 ORTHO05D003481 3.3e-56 223.0 233 52.4
BraA09t38176Z Brassica rapa HOM05D003177 ORTHO05D003481 4.3e-56 222.6 254 46.9
A09p26090 Brassica napus HOM05D003177 ORTHO05D003481 9.5e-56 221.5 238 48.7
C01p15880 Brassica napus HOM05D003177 ORTHO05D003481 1.2e-55 221.1 237 46.4
Oeu007628.1 Olea europaea HOM05D003177 ORTHO05D003481 1.6e-55 220.7 185 60.5
HanXRQChr05g0159201 Helianthus annuus HOM05D003177 ORTHO05D003481 1.1e-54 218.0 193 55.4
vmacro11767 Vaccinium macrocarpon HOM05D003177 ORTHO05D003481 6.8e-54 215.3 244 51.2
Lsat_1_v5_gn_5_5721 Lactuca sativa HOM05D003177 ORTHO05D003481 2.6e-53 213.4 224 51.3
Zm00001eb231370 Zea mays HOM05D003177 ORTHO05D003481 6.0e-50 202.2 246 45.9
Aa31LG9G9680 Aethionema arabicum HOM05D003177 ORTHO05D003481 8.6e-49 198.4 240 44.2
unitig_749.g13972 Utricularia gibba HOM05D003177 ORTHO05D003481 8.6e-49 198.4 224 43.8
arahy.Tifrunner.gnm1.ann1.P5VPT7 Arachis hypogaea HOM05D003177 ORTHO05D003481 4.3e-48 196.1 233 47.6
BcaNung02254 Brassica carinata HOM05D003177 ORTHO05D003481 2.3e-46 190.3 191 47.6
Hma1.2p1_1546F.1_g289990 Hydrangea macrophylla HOM05D003177 ORTHO05D003481 3.4e-45 186.4 185 55.1
Dinv22304 Davidia involucrata HOM05D003177 ORTHO05D003481 3.1e-38 163.3 118 66.1
arahy.Tifrunner.gnm1.ann1.BRX1G6 Arachis hypogaea HOM05D003177 ORTHO05D003481 7.6e-37 158.7 196 45.9
Medtr7g025580 Medicago truncatula HOM05D003177 ORTHO05D003481 1.1e-35 154.8 220 41.4
Medtr7g025530 Medicago truncatula HOM05D003177 ORTHO05D003481 4.2e-35 152.9 220 40.9
Glyma.12G214200 Glycine max HOM05D003177 ORTHO05D003481 1.6e-34 151.0 165 49.7
Lj3g0022760 Lotus japonicus HOM05D003177 ORTHO05D003481 2.3e-33 147.1 162 48.8
Lalb_Chr14g0366151 Lupinus albus HOM05D003177 ORTHO05D003481 1.1e-32 144.8 163 49.1
Glyma.13G287400 Glycine max HOM05D003177 ORTHO05D003481 9.6e-32 141.7 151 51.0
Lj4g0006066 Lotus japonicus HOM05D003177 ORTHO05D003481 2.8e-31 140.2 162 46.9
Medtr4g133410 Medicago truncatula HOM05D003177 ORTHO05D003481 1.7e-28 131.0 236 35.6
arahy.Tifrunner.gnm1.ann1.W18Y25 Arachis hypogaea HOM05D003177 ORTHO05D003481 2.4e-27 127.1 180 42.8
arahy.Tifrunner.gnm1.ann1.Y3PJTZ Arachis hypogaea HOM05D003177 ORTHO05D003481 2.4e-27 127.1 180 42.8
arahy.Tifrunner.gnm1.ann1.P62B18 Arachis hypogaea HOM05D003177 ORTHO05D003481 3.2e-27 126.7 180 42.8
arahy.Tifrunner.gnm1.ann1.7VJC80 Arachis hypogaea HOM05D003177 ORTHO05D003481 4.2e-27 126.3 180 42.8
CSS0025638 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 5.4e-27 125.9 119 58.0
SEGI_25291 Sequoiadendron giganteum HOM05D003177 ORTHO05D003481 1.2e-26 124.8 182 40.1
arahy.Tifrunner.gnm1.ann1.C6RLDL Arachis hypogaea HOM05D003177 ORTHO05D003481 6.0e-26 122.5 114 54.4
Eucgr.J00432 Eucalyptus grandis HOM05D003177 ORTHO05D003481 1.3e-25 121.3 68 98.5
Medtr7g007510 Medicago truncatula HOM05D003177 ORTHO05D003481 1.3e-25 121.3 200 38.5
ECA240G3581 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.1e-24 118.2 198 36.9
ATR0794G044 Amborella trichopoda HOM05D003177 ORTHO05D003481 2.5e-24 117.1 113 54.0
Medtr5g034890 Medicago truncatula HOM05D003177 ORTHO05D003481 4.0e-22 109.8 231 32.9
TPR.G36748 Trifolium pratense HOM05D003177 ORTHO05D003481 3.4e-21 106.7 100 51.0
Phvul.003G295700 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 7.1e-19 99.0 91 56.0
arahy.Tifrunner.gnm1.ann1.4630L6 Arachis hypogaea HOM05D003177 ORTHO05D003481 2.1e-18 97.4 219 33.8
arahy.Tifrunner.gnm1.ann1.PSAJ1X Arachis hypogaea HOM05D003177 ORTHO05D003481 2.7e-18 97.1 96 52.1
TPR.G36746 Trifolium pratense HOM05D003177 ORTHO05D003481 3.0e-17 93.6 120 44.2
Medtr2g082940 Medicago truncatula HOM05D003177 ORTHO05D003481 2.1e-15 87.4 128 41.4
Pp3c12_4690 Physcomitrium patens HOM05D015612 ORTHO05D003481 3.1e-14 83.6 238 26.9
Psat5g251840 Pisum sativum HOM05D003177 ORTHO05D003481 4.0e-14 83.2 191 30.9
Ca_01752_v3 Cicer arietinum L. HOM05D003177 ORTHO05D003481 3.4e-13 80.1 114 42.1
AagrBONN_evm.TU.Sc2ySwM_369.261 Anthoceros agrestis HOM05D015612 ORTHO05D003481 1.9e-11 74.3 228 25.4
DCAR_015959 Daucus carota HOM05D003177 ORTHO05D003481 4.2e-11 73.2 171 33.3
DCAR_032350 Daucus carota HOM05D003177 ORTHO05D003481 1.2e-10 71.6 138 39.1
Medtr7g025525 Medicago truncatula HOM05D003177 ORTHO05D003481 7.9e-10 68.9 70 48.6
Pp3c10_3690 Physcomitrium patens HOM05D015612 ORTHO05D003481 1.3e-09 68.2 169 29.0
CARHR054770 Cardamine hirsuta HOM05D003177 ORTHO05D003481 1.1e-08 65.1 81 40.7
ECA240G2036 Erigeron canadensis HOM05D003177 ORTHO05D003481 3.3e-08 63.5 85 36.5
Thecc.07G052500 Theobroma cacao HOM05D003177 ORTHO05D003481 2.1e-07 60.8 42 73.8
CBR_g24294 Chara braunii HOM05D015612 ORTHO05D003481 5.3e-06 56.2 218 25.2


User provided reference genes

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