Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 2.8e-246 854.7 411 100.0
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 1.9e-181 639.4 352 82.4
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 2.4e-181 639.0 352 81.8
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 5.4e-181 637.9 351 82.1
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 1.0e-179 633.6 352 81.8
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 2.3e-179 632.5 352 81.2
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 5.1e-179 631.3 352 81.0
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 4.3e-178 628.2 352 81.0
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 1.3e-177 626.7 361 81.4
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 1.6e-177 626.3 352 80.1
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 2.8e-177 625.5 353 81.0
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 3.6e-177 625.2 352 80.1
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 4.8e-177 624.8 352 81.2
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 8.1e-177 624.0 352 79.5
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 2.4e-176 622.5 352 80.1
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 2.4e-176 622.5 352 80.1
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 4.5e-175 618.2 352 79.8
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 4.5e-175 618.2 350 79.4
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 4.5e-175 618.2 350 80.0
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 4.5e-175 618.2 352 79.8
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 9.9e-175 617.1 350 79.4
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 1.7e-174 616.3 339 81.7
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 2.2e-174 615.9 350 78.3
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 2.9e-174 615.5 352 79.5
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 6.4e-174 614.4 355 78.6
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 3.2e-173 612.1 350 78.6
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 1.2e-172 610.1 356 78.1
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 3.5e-172 608.6 354 79.4
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 1.3e-171 606.7 350 78.0
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 1.3e-171 606.7 350 78.0
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 1.8e-171 606.3 339 79.9
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 3.9e-171 605.1 352 78.4
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 6.7e-171 604.4 350 78.3
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 1.5e-170 603.2 352 76.7
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 2.5e-170 602.4 352 77.0
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 4.3e-170 601.7 350 78.0
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 5.6e-170 601.3 352 77.3
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 4.8e-169 598.2 352 77.3
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 6.2e-169 597.8 352 76.7
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 6.2e-169 597.8 352 76.1
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 1.8e-168 596.3 350 76.0
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 3.1e-168 595.5 352 77.0
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 4.0e-168 595.1 352 78.4
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 5.3e-168 594.7 352 75.9
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 1.5e-167 593.2 352 76.4
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 2.0e-167 592.8 352 76.7
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 3.4e-167 592.0 352 77.8
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 4.5e-167 591.7 352 75.9
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 5.8e-167 591.3 352 76.1
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 1.3e-166 590.1 355 76.1
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 2.5e-165 585.9 374 71.9
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 4.2e-165 585.1 352 76.4
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 7.1e-165 584.3 352 75.9
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 7.1e-165 584.3 352 74.4
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 9.3e-165 583.9 352 74.7
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 1.2e-164 583.6 352 75.0
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 4.6e-164 581.6 352 75.0
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 4.6e-164 581.6 350 77.1
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 6.0e-164 581.3 352 75.0
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 7.9e-164 580.9 338 76.9
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 1.3e-163 580.1 355 76.1
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 3.9e-163 578.6 352 75.0
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 3.9e-163 578.6 352 75.0
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 5.1e-163 578.2 341 77.7
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 1.1e-162 577.0 347 74.6
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 1.1e-162 577.0 352 74.7
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 1.1e-162 577.0 352 75.9
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 1.1e-162 577.0 352 73.9
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 1.9e-162 576.2 319 80.9
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 2.5e-162 575.9 351 76.4
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 5.7e-162 574.7 319 79.9
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 1.3e-161 573.5 352 74.4
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 8.2e-161 570.9 352 74.4
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 4.0e-160 568.5 351 71.8
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 5.3e-160 568.2 352 73.9
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 5.3e-160 568.2 352 73.9
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 3.4e-159 565.5 352 74.4
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 3.4e-159 565.5 352 71.6
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 1.0e-158 563.9 339 74.0
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 2.9e-158 562.4 338 74.0
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 2.9e-158 562.4 352 73.9
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 5.0e-158 561.6 352 74.1
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 1.1e-157 560.5 339 75.5
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 7.1e-157 557.8 358 70.9
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 9.3e-157 557.4 383 69.5
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 9.3e-157 557.4 353 72.0
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 1.6e-156 556.6 352 73.6
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.6e-153 546.6 352 72.4
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 6.3e-153 544.7 352 71.3
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 8.2e-153 544.3 339 74.0
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 1.4e-152 543.5 408 63.2
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 2.5e-149 532.7 319 74.9
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 2.5e-149 532.7 305 79.0
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 2.7e-148 529.3 346 70.2
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 8.8e-147 524.2 309 77.0
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 8.8e-147 524.2 309 77.0
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 3.7e-145 518.8 295 79.0
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 1.5e-143 513.5 319 72.7
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 1.0e-142 510.8 338 66.9
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 5.1e-139 498.4 353 63.7
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 2.2e-137 493.0 319 71.8
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 3.5e-135 485.7 306 72.9
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 1.1e-133 480.7 296 73.3
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 1.9e-133 479.9 353 62.3
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 1.2e-132 477.2 396 60.6
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 5.7e-130 468.4 323 68.1
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 2.0e-127 459.9 269 75.5
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 3.5e-127 459.1 353 58.9
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 3.6e-124 449.1 255 78.0
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 2.2e-121 439.9 263 75.7
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 3.6e-116 422.5 353 59.2
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 9.5e-109 397.9 223 81.2
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 2.8e-100 369.8 201 83.1
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 7.8e-95 351.7 180 90.0
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 3.5e-87 326.2 203 70.9
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 5.1e-86 322.4 230 62.6
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 6.6e-86 322.0 358 42.2
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 1.2e-84 317.8 353 41.1
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.1e-80 304.7 212 66.5
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 3.9e-78 296.2 355 41.7
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 3.3e-77 293.1 160 80.6
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 2.1e-71 273.9 270 54.8
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 7.4e-61 238.8 144 75.7
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 5.1e-54 216.1 126 79.4
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 3.7e-52 209.9 118 76.3
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 6.9e-51 205.7 364 30.5
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 7.4e-45 185.7 108 76.9
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 2.9e-41 173.7 87 90.8
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 9.3e-40 168.7 129 58.9
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 1.1e-37 161.8 226 38.9
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 3.8e-33 146.7 306 29.4
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 1.8e-27 127.9 76 76.3
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 5.9e-26 122.9 81 64.2
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 5.0e-25 119.8 72 70.8
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 1.8e-22 111.3 216 30.1
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 5.1e-22 109.8 69 71.0
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 8.8e-22 109.0 96 55.2
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 9.4e-16 89.0 142 37.3
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 9.4e-16 89.0 57 68.4
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 4.0e-14 83.6 54 74.1
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.5e-13 81.6 44 79.5
MCO04G183 Micromonas commoda HOM05D005066 ORTHO05D006138 1.5e-13 81.6 358 23.2
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 1.8e-11 74.7 60 53.3
Zm00001eb329590 Zea mays HOM05D001978 ORTHO05D003036 7.0e-11 72.8 263 24.3
Zm00001eb110650 Zea mays HOM05D001978 ORTHO05D003036 2.7e-10 70.9 262 22.9
HPP92_001386 Vanilla planifolia HOM05D001978 ORTHO05D003036 5.9e-10 69.7 321 22.1
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 1.3e-09 68.6 48 62.5
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 2.2e-09 67.8 42 69.0
AagrBONN_evm.TU.Sc2ySwM_228.219 Anthoceros agrestis HOM05D002302 ORTHO05D002728 2.9e-09 67.4 157 27.4
Phvul.011G010400 Phaseolus vulgaris HOM05D001978 ORTHO05D003036 6.5e-09 66.2 320 22.8
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 1.9e-08 64.7 42 66.7
Nn4g22810 Nelumbo nucifera HOM05D005066 ORTHO05D006138 3.2e-08 63.9 41 63.4
Rhsim11G0131900 Rhododendron simsii HOM05D000347 ORTHO05D001997 5.5e-08 63.2 163 25.2
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 5.5e-08 63.2 161 32.3
Cre02.g109150 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 9.4e-08 62.4 59 39.0
vmacro01787 Vaccinium macrocarpon HOM05D000347 ORTHO05D001997 9.4e-08 62.4 163 25.2
CDE09G0202 Ceratophyllum demersum HOM05D001978 ORTHO05D003036 1.6e-07 61.6 214 21.5
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 2.1e-07 61.2 68 44.1
vmacro21823 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 2.1e-07 61.2 32 71.9
LjContig00016g0007772 Lotus japonicus HOM05D001978 ORTHO05D003036 6.1e-07 59.7 117 29.1
LjContig00095g0022524 Lotus japonicus HOM05D001978 ORTHO05D003036 6.1e-07 59.7 117 29.1
Hma1.2p1_0685F.1_g203310 Hydrangea macrophylla HOM05D001978 ORTHO05D003036 8.0e-07 59.3 214 22.4
Aa31LG11G20 Aethionema arabicum HOM05D000347 ORTHO05D001997 1.4e-06 58.5 163 22.1
Nn2g15171 Nelumbo nucifera HOM05D001978 ORTHO05D003036 1.4e-06 58.5 188 25.0
CSS0034960 Camellia sinensis var. sinensis HOM05D001978 ORTHO05D003036 1.8e-06 58.2 214 22.0
TPR.G8347 Trifolium pratense HOM05D001978 ORTHO05D003036 3.0e-06 57.4 125 27.2
PSO675G4117 Papaver somniferum HOM05D001978 ORTHO05D003036 4.0e-06 57.0 210 23.8
PSO732G0135 Papaver somniferum HOM05D001978 ORTHO05D003036 4.0e-06 57.0 210 23.8
Psat7g158440 Pisum sativum HOM05D001978 ORTHO05D003036 4.0e-06 57.0 125 27.2
CSS0022031 Camellia sinensis var. sinensis HOM05D001978 ORTHO05D003036 5.2e-06 56.6 214 21.5
Nn7g36348 Nelumbo nucifera HOM05D001978 ORTHO05D003036 5.2e-06 56.6 189 24.9
SMO347G0508 Selaginella moellendorffii HOM05D001978 ORTHO05D003036 5.2e-06 56.6 215 23.7


User provided reference genes

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