Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 0.0e+00 1717.6 849 100.0
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 4.4e-310 1067.8 860 68.1
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 2.8e-248 862.4 878 53.5
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 1.1e-244 850.5 869 53.5
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.1e-244 850.5 858 54.0
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 1.4e-244 850.1 872 54.4
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.2e-243 847.0 868 54.1
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 9.0e-239 830.9 868 52.5
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 2.6e-238 829.3 849 52.8
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 2.9e-237 825.9 859 52.3
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 3.8e-237 825.5 871 52.0
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 8.5e-237 824.3 871 51.8
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 2.5e-236 822.8 874 52.4
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 7.9e-235 817.8 873 51.8
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 1.4e-234 817.0 870 51.6
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 3.9e-234 815.5 874 51.4
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 6.7e-234 814.7 879 52.3
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 4.3e-233 812.0 859 52.3
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 1.7e-232 810.1 872 50.7
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 8.2e-232 807.7 874 51.5
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 2.4e-231 806.2 882 51.6
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 4.1e-231 805.4 872 50.2
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 9.1e-231 804.3 897 50.3
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 2.6e-230 802.7 880 52.0
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 4.5e-230 802.0 874 51.1
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 1.0e-229 800.8 880 51.9
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 1.7e-229 800.0 874 51.3
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 6.5e-229 798.1 855 52.3
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 6.5e-229 798.1 855 52.3
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 2.1e-227 793.1 873 49.6
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 2.1e-227 793.1 873 49.6
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.5e-225 786.9 894 50.6
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 1.1e-223 780.8 873 50.4
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 5.3e-223 778.5 861 49.8
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 7.2e-220 768.1 892 49.6
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 7.2e-220 768.1 875 49.5
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 9.4e-220 767.7 884 48.6
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 4.7e-219 765.4 877 49.0
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 7.4e-217 758.1 881 49.0
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 6.3e-216 755.0 911 48.5
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 1.6e-214 750.4 884 48.5
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 6.5e-213 745.0 905 48.0
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 1.6e-211 740.3 849 48.9
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 1.6e-211 740.3 879 48.4
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 3.0e-210 736.1 901 48.6
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 7.5e-209 731.5 877 47.7
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 2.4e-207 726.5 877 47.3
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 2.0e-206 723.4 847 47.5
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 3.5e-206 722.6 852 48.7
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 2.5e-204 716.5 842 47.7
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 5.5e-204 715.3 869 47.3
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 2.1e-203 713.4 885 46.3
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 2.1e-203 713.4 867 47.1
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 5.7e-201 705.3 842 46.2
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 1.3e-200 704.1 898 47.0
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 1.4e-199 700.7 842 48.0
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 2.4e-199 699.9 857 47.0
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.6e-198 697.2 895 45.8
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 2.0e-198 696.8 867 46.5
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 2.7e-198 696.4 859 46.2
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 1.3e-197 694.1 910 45.9
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 1.7e-197 693.7 883 47.2
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 2.3e-197 693.3 890 45.7
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 3.8e-197 692.6 846 47.8
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 5.0e-197 692.2 859 46.6
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.5e-196 690.6 856 46.0
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 1.5e-196 690.6 858 46.3
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.9e-196 690.3 899 44.4
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 4.2e-196 689.1 867 46.3
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 7.2e-196 688.3 876 46.9
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 2.1e-195 686.8 890 45.3
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 8.0e-195 684.9 737 51.2
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 3.0e-194 682.9 824 46.7
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 4.0e-194 682.6 844 46.9
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 2.6e-193 679.9 850 46.2
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.6e-193 679.9 860 48.5
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 2.6e-193 679.9 863 45.8
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 4.4e-193 679.1 856 44.9
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 6.3e-192 675.2 842 46.6
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 6.3e-192 675.2 893 45.1
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 1.8e-191 673.7 858 45.1
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 2.4e-191 673.3 854 46.7
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 2.4e-191 673.3 854 46.7
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 4.1e-191 672.5 916 45.1
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 4.5e-190 669.1 852 44.0
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 3.9e-189 666.0 876 46.0
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 5.6e-188 662.1 952 42.9
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 9.5e-188 661.4 742 50.1
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 7.5e-185 651.7 866 45.5
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 9.8e-185 651.4 759 49.3
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 2.0e-182 643.7 866 46.0
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 6.0e-182 642.1 861 43.0
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 1.0e-181 641.3 862 43.7
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 1.1e-180 637.9 866 43.8
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 1.2e-179 634.4 873 44.0
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 8.9e-178 628.2 863 44.7
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 7.0e-175 618.6 913 41.2
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 1.9e-172 610.5 854 43.8
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 6.8e-170 602.1 787 44.0
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 4.6e-166 589.3 645 51.3
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 2.1e-163 580.5 798 43.0
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 8.1e-163 578.6 748 46.1
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 3.1e-162 576.6 691 48.0
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 4.4e-161 572.8 853 41.5
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 1.3e-152 544.7 878 39.2
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 2.9e-152 543.5 622 48.4
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 1.3e-147 528.1 699 44.1
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 2.8e-147 526.9 775 43.0
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.8e-141 507.7 571 50.6
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.3e-141 507.3 607 47.4
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.6e-139 501.1 656 44.1
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 5.5e-135 486.1 642 46.3
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 3.7e-131 473.4 542 49.8
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 1.1e-130 471.9 683 40.8
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 4.2e-119 433.3 501 47.7
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 1.4e-98 365.2 354 54.0
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 5.3e-98 363.2 565 41.1
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 9.4e-95 352.4 543 41.8
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 4.7e-94 350.1 538 37.7
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 1.1e-90 339.0 958 31.0
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 1.7e-88 331.6 387 50.4
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 2.1e-86 324.7 479 40.1
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 2.1e-86 324.7 653 35.2
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 4.4e-84 317.0 319 51.1
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 2.0e-81 308.1 654 33.3
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 2.9e-80 304.3 616 32.1
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 3.2e-74 284.3 658 30.9
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 1.9e-71 275.0 503 34.8
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 3.6e-70 270.8 460 38.5
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.1e-66 259.2 215 62.3
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 2.5e-63 248.1 325 43.7
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 1.7e-59 235.3 191 64.4
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 4.6e-57 227.3 185 65.4
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.2e-52 212.6 223 53.4
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 4.4e-52 210.7 180 57.8
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 1.7e-48 198.7 169 63.9
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 1.7e-48 198.7 305 43.0
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 3.3e-47 194.5 244 43.9
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 8.1e-46 189.9 185 56.8
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 4.0e-45 187.6 176 58.0
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 4.9e-43 180.6 198 52.5
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 3.3e-39 167.9 119 64.7
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 2.1e-38 165.2 119 63.0
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 1.4e-34 152.5 114 61.4
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 1.9e-34 152.1 122 60.7
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 5.4e-34 150.6 163 52.1
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 9.3e-34 149.8 163 51.5
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 2.1e-33 148.7 160 55.0
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 3.3e-31 141.4 96 70.8
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 9.6e-31 139.8 95 69.5
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 3.1e-29 134.8 146 54.1
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 3.1e-29 134.8 761 22.5
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 5.3e-29 134.0 108 64.8
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 1.5e-28 132.5 274 32.1
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 2.0e-28 132.1 456 26.5
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 5.8e-28 130.6 153 49.7
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 1.7e-27 129.0 134 52.2
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 3.8e-27 127.9 89 64.0
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 8.4e-27 126.7 134 53.0
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 3.2e-26 124.8 301 28.9
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 2.1e-25 122.1 199 38.2
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 8.1e-22 110.2 108 50.9
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 8.1e-22 110.2 98 55.1
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 2.0e-20 105.5 68 70.6
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 1.9e-18 99.0 419 25.5
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 4.2e-18 97.8 137 42.3
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 7.1e-18 97.1 214 35.0
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 6.9e-13 80.5 80 55.0
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 2.6e-12 78.6 62 67.7
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 2.2e-11 75.5 90 51.1
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 2.9e-11 75.1 71 60.6
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.5e-10 72.0 64 59.4
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 4.2e-10 71.2 233 28.8
Glyma.17G000200 Glycine max HOM05D003758 ORTHO05D004344 2.7e-09 68.6 118 40.7
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 1.8e-08 65.9 141 30.5
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 3.0e-08 65.1 58 55.2
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 3.3e-07 61.6 46 60.9
Actinidia00830 Actinidia chinensis HOM05D003758 ORTHO05D004344 5.7e-07 60.8 73 37.0
CSS0008641 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.6e-06 59.3 57 56.1


User provided reference genes

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