Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 0.0e+00 1632.5 859 100.0
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 4.0e-194 682.6 944 45.6
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 9.0e-186 654.8 800 46.4
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 4.9e-184 649.0 866 44.9
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 4.3e-180 636.0 854 45.0
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 3.1e-178 629.8 855 45.8
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 1.6e-174 617.5 856 43.8
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 5.1e-173 612.5 838 44.3
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 7.4e-172 608.6 821 45.8
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 8.2e-171 605.1 832 43.9
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 1.1e-170 604.7 825 42.8
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 9.0e-170 601.7 850 44.0
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 3.4e-169 599.7 855 43.3
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 4.2e-167 592.8 832 42.5
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 6.1e-166 589.0 837 42.8
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 3.9e-165 586.3 844 42.3
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 6.7e-165 585.5 867 42.7
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 8.7e-165 585.1 880 42.5
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 4.3e-164 582.8 870 41.5
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 7.4e-164 582.0 877 40.9
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.3e-163 581.3 820 42.6
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 2.8e-163 580.1 878 41.0
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 8.2e-163 578.6 878 40.9
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 2.4e-162 577.0 836 41.1
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 9.0e-162 575.1 870 41.8
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 9.0e-162 575.1 843 42.1
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 1.1e-159 568.2 852 41.8
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 7.2e-159 565.5 837 41.0
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 7.2e-159 565.5 863 41.8
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 2.1e-158 563.9 841 40.9
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 3.9e-157 559.7 840 41.3
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 1.5e-156 557.8 845 40.0
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 1.5e-156 557.8 1015 37.1
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 4.3e-156 556.2 820 41.1
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 7.4e-156 555.4 812 41.3
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 9.7e-156 555.1 861 40.8
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 4.1e-154 549.7 992 37.2
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 1.5e-153 547.7 866 40.8
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 2.0e-153 547.4 828 40.0
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 2.2e-152 543.9 833 40.9
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 6.1e-150 535.8 858 40.7
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 5.3e-146 522.7 939 38.1
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 3.5e-145 520.0 856 38.9
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 1.9e-143 514.2 818 40.0
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 5.7e-140 502.7 1055 34.5
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 3.7e-139 500.0 855 39.1
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.2e-137 495.0 915 37.2
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.2e-134 485.0 864 37.3
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 1.2e-132 478.4 861 36.5
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.2e-132 478.4 870 36.3
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 7.5e-132 475.7 854 38.1
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 7.5e-132 475.7 867 36.4
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 3.7e-131 473.4 814 38.3
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 1.1e-130 471.9 822 37.6
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 1.4e-130 471.5 820 36.5
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 7.0e-130 469.2 823 36.3
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 3.5e-129 466.8 816 36.4
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 4.5e-129 466.5 839 37.3
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.3e-128 464.9 816 36.4
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.7e-128 464.5 976 35.9
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 1.7e-128 464.5 822 36.7
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 3.8e-128 463.4 839 37.1
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 6.5e-128 462.6 794 39.3
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.5e-127 460.7 578 45.7
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 2.1e-126 457.6 854 37.6
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 2.7e-126 457.2 833 36.6
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 2.7e-126 457.2 844 38.2
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 1.8e-125 454.5 805 36.9
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 2.3e-125 454.1 861 36.9
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 5.2e-125 453.0 805 37.5
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 8.8e-125 452.2 852 36.9
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.7e-123 448.0 895 35.1
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 2.8e-123 447.2 675 40.3
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 3.7e-123 446.8 834 36.1
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 1.8e-122 444.5 844 35.4
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 2.7e-121 440.7 811 36.4
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 3.5e-121 440.3 865 35.5
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 1.7e-120 438.0 835 35.2
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 4.2e-119 433.3 821 36.4
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 4.7e-118 429.9 868 36.3
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 3.4e-116 423.7 828 37.3
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 9.8e-116 422.2 896 32.3
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 9.8e-116 422.2 835 35.7
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 6.4e-115 419.5 805 34.9
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 1.4e-114 418.3 847 34.0
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 2.7e-113 414.1 840 34.6
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 2.5e-111 407.5 825 37.1
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 3.6e-110 403.7 832 32.7
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 2.3e-109 401.0 856 33.8
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.3e-109 401.0 810 34.2
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 1.1e-98 365.5 830 31.7
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 7.1e-98 362.8 854 33.6
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 2.3e-96 357.8 829 31.5
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 2.1e-94 351.3 836 31.5
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 4.7e-94 350.1 775 35.5
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 5.2e-93 346.7 509 40.7
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 7.1e-90 336.3 651 36.3
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.2e-89 335.5 686 36.4
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 1.3e-88 332.0 759 36.4
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 6.8e-85 319.7 461 44.3
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 9.3e-82 309.3 471 41.4
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 7.8e-81 306.2 695 33.2
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 5.1e-80 303.5 586 37.0
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 7.3e-79 299.7 456 40.4
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 3.6e-78 297.4 456 39.9
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 1.8e-77 295.0 462 39.8
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 1.8e-77 295.0 482 40.0
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.8e-77 295.0 457 40.0
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 6.9e-77 293.1 455 40.0
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 1.2e-76 292.4 885 29.8
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.5e-76 292.0 470 40.6
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 1.5e-76 292.0 540 36.3
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 2.0e-76 291.6 465 39.1
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 2.7e-73 281.2 450 39.1
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 7.9e-73 279.6 762 31.5
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 1.0e-72 279.3 463 40.2
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 1.0e-72 279.3 463 40.2
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 2.5e-71 274.6 470 37.9
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 7.4e-71 273.1 455 37.8
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 1.4e-69 268.9 459 37.9
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 4.0e-69 267.3 483 37.3
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 5.8e-68 263.5 474 38.0
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 7.6e-68 263.1 851 27.5
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.7e-67 261.9 466 38.0
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 2.4e-66 258.1 418 38.8
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.1e-65 255.0 446 36.5
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 6.0e-65 253.4 458 36.5
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 1.3e-64 252.3 463 35.2
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 3.9e-64 250.8 467 35.5
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 4.3e-63 247.3 827 28.8
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 8.1e-62 243.0 460 36.7
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 1.4e-61 242.3 450 35.3
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 5.3e-61 240.4 338 41.7
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.9e-59 234.6 826 28.0
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 2.3e-56 224.9 834 25.9
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 1.1e-53 216.1 442 34.8
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 3.8e-51 207.6 430 35.1
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 9.3e-50 203.0 802 26.2
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 7.9e-49 199.9 426 35.4
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.3e-48 199.1 465 32.7
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 3.2e-42 177.9 841 25.2
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.2e-41 176.0 822 24.6
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 2.7e-41 174.9 843 24.6
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 3.4e-36 157.9 201 46.8
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 3.4e-36 157.9 272 38.6
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 8.5e-35 153.3 287 37.6
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 4.7e-33 147.5 484 25.8
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 5.1e-32 144.1 100 63.0
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 3.5e-28 131.3 103 56.3
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 1.4e-24 119.4 131 48.9
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 6.7e-24 117.1 213 31.0
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 3.7e-22 111.3 379 29.6
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.4e-21 109.4 90 53.3
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.0e-19 103.2 109 56.0
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 2.2e-14 85.5 112 38.4
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 4.1e-13 81.3 454 26.2
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 5.0e-11 74.3 84 46.4
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.6e-09 69.3 69 44.9
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.4e-08 66.2 80 32.5
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 5.2e-08 64.3 49 65.3
AagrBONN_evm.TU.Sc2ySwM_117.2758 Anthoceros agrestis HOM05D059405 ORTHO05D004901 7.5e-07 60.5 58 41.4
BcaB05g24188 Brassica carinata HOM05D004295 ORTHO05D004901 2.2e-06 58.9 50 56.0
BcaB07g30913 Brassica carinata HOM05D004295 ORTHO05D004901 2.2e-06 58.9 50 56.0
AagrBONN_evm.TU.Sc2ySwM_340.1970 Anthoceros agrestis HOM05D000465 ORTHO05D000301 2.8e-06 58.5 63 47.6
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-06 57.8 80 30.0


User provided reference genes

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