Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 1.2e-239 833.6 747 100.0
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 5.5e-99 366.3 583 75.1
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 9.5e-99 365.5 581 73.7
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 8.0e-98 362.5 581 75.7
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 3.7e-95 353.6 580 73.6
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 1.8e-94 351.3 581 74.2
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 4.1e-94 350.1 580 74.0
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 2.7e-93 347.4 581 73.7
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 1.7e-92 344.7 581 67.0
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 1.7e-92 344.7 581 70.6
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 8.6e-92 342.4 581 72.8
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 8.6e-92 342.4 581 72.8
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 1.1e-91 342.0 581 69.5
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 1.1e-91 342.0 581 72.5
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 4.3e-91 340.1 586 72.0
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 1.6e-90 338.2 583 69.0
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 4.7e-90 336.7 583 72.2
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 4.7e-90 336.7 581 69.4
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 4.0e-89 333.6 581 72.5
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 5.8e-88 329.7 580 65.5
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 1.3e-87 328.6 583 71.5
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 3.7e-87 327.0 583 72.2
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 1.1e-86 325.5 589 70.8
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 6.0e-85 319.7 581 71.4
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 1.0e-84 318.9 581 69.2
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 1.1e-83 315.5 580 67.2
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 4.3e-83 313.5 581 68.7
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 1.6e-82 311.6 497 72.6
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 4.7e-82 310.1 581 69.5
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 4.0e-81 307.0 589 69.1
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 4.0e-81 307.0 581 70.9
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 2.6e-80 304.3 581 67.6
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 2.4e-78 297.7 587 64.1
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 3.5e-77 293.9 563 69.4
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 8.6e-76 289.3 580 69.5
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 1.1e-75 288.9 581 67.1
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 3.3e-75 287.3 587 64.9
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 7.3e-75 286.2 581 72.1
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 7.3e-75 286.2 584 63.2
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 9.5e-75 285.8 580 69.7
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 2.8e-74 284.3 562 69.8
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 3.6e-74 283.9 497 71.6
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 6.2e-74 283.1 581 65.6
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 2.3e-73 281.2 498 65.1
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 4.4e-72 276.9 581 65.2
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 7.6e-72 276.2 525 69.1
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 1.7e-71 275.0 553 63.5
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 1.7e-71 275.0 583 61.6
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 1.7e-71 275.0 598 64.2
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 4.9e-71 273.5 581 70.7
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 1.4e-70 271.9 581 68.0
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 2.4e-70 271.2 581 64.5
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 2.4e-70 271.2 584 55.1
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 9.2e-70 269.2 583 48.7
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 4.6e-69 266.9 581 67.6
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 4.6e-69 266.9 574 55.4
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 4.6e-69 266.9 681 63.3
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 6.0e-69 266.5 640 59.1
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 1.3e-68 265.4 564 68.3
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 1.7e-68 265.0 581 64.0
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 5.1e-68 263.5 583 70.0
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 8.6e-68 262.7 498 70.5
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 2.5e-67 261.2 582 67.0
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 2.5e-67 261.2 580 68.3
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 5.6e-67 260.0 580 64.5
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 2.8e-66 257.7 581 62.8
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 2.8e-66 257.7 626 62.9
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 3.6e-66 257.3 581 62.5
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 3.6e-66 257.3 581 62.7
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 4.7e-66 256.9 590 56.6
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 8.1e-66 256.1 582 65.5
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 1.5e-64 251.9 591 61.9
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 1.5e-64 251.9 582 67.2
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 7.6e-64 249.6 582 67.0
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 4.9e-63 246.9 596 60.1
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 6.4e-63 246.5 583 63.3
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 6.4e-63 246.5 313 60.7
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 6.4e-63 246.5 582 67.0
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 9.3e-62 242.7 581 62.0
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 2.1e-61 241.5 594 59.3
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 3.9e-60 237.3 446 73.8
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 3.9e-60 237.3 584 66.4
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 5.6e-59 233.4 277 70.4
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 2.1e-58 231.5 671 59.8
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 2.8e-58 231.1 407 58.5
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 3.1e-57 227.6 580 66.0
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 5.3e-57 226.9 565 60.0
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 9.0e-57 226.1 560 66.8
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 1.2e-56 225.7 518 70.7
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 2.2e-55 221.5 562 63.2
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 4.9e-55 220.3 590 59.7
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 6.4e-55 219.9 588 62.2
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 3.5e-53 214.2 407 60.0
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 1.3e-52 212.2 310 61.9
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 5.1e-52 210.3 562 63.7
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 2.0e-48 198.4 558 37.8
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 9.9e-48 196.1 588 61.6
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 1.6e-45 188.7 220 61.4
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 3.3e-43 181.0 573 55.7
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 1.3e-36 159.1 593 51.8
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 3.0e-36 157.9 233 52.4
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 7.4e-35 153.3 198 65.2
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 4.1e-33 147.5 147 56.5
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 4.1e-33 147.5 540 57.8
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 3.8e-31 141.0 121 70.2
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 1.1e-27 129.4 582 54.8
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 2.2e-23 115.2 74 77.0
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 2.2e-23 115.2 74 77.0
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 2.2e-23 115.2 74 77.0
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 2.9e-23 114.8 74 73.0
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 1.4e-22 112.5 74 75.7
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 1.4e-20 105.9 97 59.8
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 5.1e-20 104.0 140 67.9
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 5.1e-20 104.0 140 67.9
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 5.1e-20 104.0 140 67.9
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 5.0e-15 87.4 113 48.7
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 6.5e-15 87.0 59 66.1
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 3.2e-14 84.7 52 80.8
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 5.5e-14 84.0 198 31.8
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 4.7e-13 80.9 76 50.0
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 1.4e-09 69.3 98 68.4
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 1.8e-09 68.9 78 46.2
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 4.1e-09 67.8 38 84.2
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 9.1e-09 66.6 38 78.9
AL230U10010 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 8.5e-07 60.1 39 74.4
MCO03G083 Micromonas commoda HOM05D006220 ORTHO05D007590 8.5e-07 60.1 297 29.6
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 7.2e-06 57.0 225 44.0


User provided reference genes

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