Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 8.4e-108 393.7 194 100.0
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 5.4e-46 188.3 109 84.4
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 5.4e-46 188.3 109 84.4
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 7.0e-46 188.0 109 84.4
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 1.2e-45 187.2 109 84.4
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 7.8e-45 184.5 109 83.5
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 7.8e-45 184.5 109 83.5
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 2.3e-44 183.0 109 83.5
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.3e-44 183.0 109 83.5
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 3.9e-44 182.2 109 81.7
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 3.9e-44 182.2 109 81.7
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.5e-43 180.3 109 80.7
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 5.6e-43 178.3 109 80.7
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 9.5e-43 177.6 110 80.0
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 2.1e-42 176.4 109 79.8
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 2.8e-42 176.0 109 78.0
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 3.6e-42 175.6 109 78.9
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 6.2e-42 174.9 109 80.7
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 8.0e-42 174.5 109 80.7
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 1.0e-41 174.1 111 76.6
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 1.0e-41 174.1 110 73.6
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 1.4e-41 173.7 107 80.4
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.4e-41 173.7 109 74.3
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.4e-41 173.7 109 78.9
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 1.8e-41 173.3 109 77.1
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 1.8e-41 173.3 109 78.0
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 1.2e-40 170.6 109 79.8
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.5e-40 170.2 110 80.0
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 1.5e-40 170.2 109 77.1
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 2.0e-40 169.9 109 78.9
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 2.6e-40 169.5 109 76.1
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 2.6e-40 169.5 109 77.1
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 5.8e-40 168.3 109 79.8
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 5.8e-40 168.3 109 75.2
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 7.5e-40 167.9 109 78.0
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 9.8e-40 167.5 109 76.1
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 9.8e-40 167.5 109 76.1
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.3e-39 167.2 107 75.7
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 2.2e-39 166.4 105 79.0
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.2e-39 166.4 109 73.4
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 2.9e-39 166.0 110 75.5
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 3.7e-39 165.6 109 76.1
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 4.9e-39 165.2 109 76.1
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 4.9e-39 165.2 110 77.3
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 4.9e-39 165.2 110 77.3
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 6.4e-39 164.9 111 73.0
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 6.4e-39 164.9 109 73.4
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 8.3e-39 164.5 110 76.4
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.1e-38 164.1 109 73.4
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 1.4e-38 163.7 111 73.0
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 1.9e-38 163.3 110 73.6
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 3.2e-38 162.5 109 75.2
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 5.4e-38 161.8 112 75.0
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 5.4e-38 161.8 111 73.0
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 7.0e-38 161.4 109 73.4
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 9.2e-38 161.0 108 72.2
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 1.2e-37 160.6 111 78.4
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.6e-37 160.2 104 78.8
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.0e-37 159.8 109 75.2
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 2.0e-37 159.8 125 72.0
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 2.7e-37 159.5 109 71.6
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 2.7e-37 159.5 109 71.6
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 2.7e-37 159.5 109 70.6
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 3.5e-37 159.1 110 70.9
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 6.0e-37 158.3 111 72.1
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 6.0e-37 158.3 111 72.1
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 6.0e-37 158.3 111 72.1
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 7.8e-37 157.9 105 72.4
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 7.8e-37 157.9 111 72.1
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 7.8e-37 157.9 111 72.1
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 7.8e-37 157.9 111 71.2
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.0e-36 157.5 109 73.4
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 1.0e-36 157.5 111 73.9
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 1.3e-36 157.1 111 71.2
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 1.3e-36 157.1 110 73.6
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 2.3e-36 156.4 111 71.2
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 2.3e-36 156.4 111 71.2
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 2.3e-36 156.4 110 69.1
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 2.3e-36 156.4 112 72.3
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 2.3e-36 156.4 109 71.6
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 2.3e-36 156.4 109 71.6
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 3.0e-36 156.0 109 71.6
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 3.9e-36 155.6 109 73.4
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 3.9e-36 155.6 110 74.5
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 5.0e-36 155.2 110 71.8
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 5.0e-36 155.2 110 74.5
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 6.6e-36 154.8 111 70.3
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 6.6e-36 154.8 113 71.7
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 6.6e-36 154.8 113 71.7
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 8.6e-36 154.5 112 71.4
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 8.6e-36 154.5 112 71.4
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 8.6e-36 154.5 117 69.2
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 8.6e-36 154.5 110 72.7
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 1.1e-35 154.1 111 71.2
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 1.1e-35 154.1 111 71.2
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 1.1e-35 154.1 111 71.2
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 1.1e-35 154.1 111 71.2
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 1.1e-35 154.1 111 71.2
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.5e-35 153.7 109 71.6
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 1.9e-35 153.3 112 71.4
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 1.9e-35 153.3 112 71.4
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 1.9e-35 153.3 111 71.2
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 1.9e-35 153.3 112 68.8
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 2.5e-35 152.9 112 70.5
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 2.5e-35 152.9 112 70.5
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 2.5e-35 152.9 112 71.4
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 2.5e-35 152.9 110 71.8
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 4.3e-35 152.1 113 70.8
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 4.3e-35 152.1 110 71.8
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 4.3e-35 152.1 110 74.5
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 5.6e-35 151.8 112 68.8
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 7.3e-35 151.4 109 74.3
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 7.3e-35 151.4 113 69.0
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 7.3e-35 151.4 109 65.1
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 9.5e-35 151.0 106 71.7
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 2.8e-34 149.4 111 71.2
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 3.6e-34 149.1 110 73.6
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 3.6e-34 149.1 105 72.4
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 6.2e-34 148.3 109 69.7
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 6.2e-34 148.3 111 68.5
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 8.1e-34 147.9 109 67.0
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 1.8e-33 146.7 105 73.3
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.8e-33 146.7 111 70.3
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 4.0e-33 145.6 105 71.4
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 6.8e-33 144.8 105 71.4
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 1.2e-32 144.1 110 70.9
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 5.8e-32 141.7 90 82.2
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 5.8e-32 141.7 110 69.1
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 7.5e-32 141.4 111 67.6
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 1.3e-31 140.6 109 67.0
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 1.1e-30 137.5 106 67.0
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 3.2e-30 136.0 110 69.1
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 4.1e-30 135.6 109 63.3
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 4.1e-30 135.6 106 66.0
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 5.4e-30 135.2 109 63.3
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.1e-29 133.3 109 63.3
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 7.8e-29 131.3 84 76.2
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.3e-28 129.8 110 61.8
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 1.1e-27 127.5 109 61.5
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 2.5e-27 126.3 90 76.7
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 7.3e-27 124.8 109 62.4
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 8.1e-26 121.3 110 59.1
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 1.1e-25 120.9 90 73.3
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 8.9e-25 117.9 109 61.5
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 1.5e-24 117.1 63 81.0
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 2.0e-24 116.7 112 57.1
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.3e-23 114.0 119 53.8
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 1.2e-21 107.5 109 53.2
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 6.0e-21 105.1 124 54.0
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 7.8e-21 104.8 111 52.3
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 8.6e-20 101.3 57 80.7
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 1.9e-19 100.1 60 75.0
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.1e-18 96.7 89 57.3
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.8e-18 96.3 82 62.2
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 2.8e-18 96.3 74 74.3
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 4.7e-18 95.5 119 49.6
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 6.2e-18 95.1 81 67.9
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.1e-17 94.4 117 47.9
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.4e-17 94.0 118 47.5
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 4.0e-17 92.4 110 47.3
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 1.6e-13 80.5 52 71.2
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 8.7e-12 74.7 37 83.8
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 2.5e-11 73.2 111 39.6
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 7.3e-11 71.6 38 76.3
PSO541G1472 Papaver somniferum HOM05D004382 ORTHO05D005181 9.3e-06 54.7 38 73.7


User provided reference genes

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