Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03083 Eucalyptus grandis HOM05D006896 ORTHO05D007622 2.1e-80 302.8 155 100.0
Ciclev10026494m.g Citrus clementina HOM05D006896 ORTHO05D007622 7.0e-36 154.8 154 56.5
TAR636G1166 Trochodendron aralioides HOM05D006896 ORTHO05D007622 9.1e-36 154.5 155 56.8
Ciclev10022257m.g Citrus clementina HOM05D006896 ORTHO05D007622 4.5e-35 152.1 157 54.1
CiPaw.04G076100 Carya illinoinensis HOM05D006896 ORTHO05D007622 3.3e-33 146.0 151 57.6
GSVIVG01016958001 Vitis vinifera HOM05D006896 ORTHO05D007622 2.8e-32 142.9 153 55.6
Cpa.g.sc25.137 Carica papaya HOM05D006896 ORTHO05D007622 1.0e-31 141.0 155 50.3
PGR102G1058 Punica granatum HOM05D006896 ORTHO05D007622 1.8e-31 140.2 156 50.6
Manes.04G135200 Manihot esculenta HOM05D006896 ORTHO05D007622 1.2e-30 137.5 154 53.2
Gohir.A09G147400 Gossypium hirsutum HOM05D006896 ORTHO05D007622 1.5e-30 137.1 162 52.5
Gorai.006G164500 Gossypium raimondii HOM05D006896 ORTHO05D007622 5.7e-30 135.2 147 55.1
Gohir.D09G143000 Gossypium hirsutum HOM05D006896 ORTHO05D007622 7.5e-30 134.8 162 51.9
Nn1g00183 Nelumbo nucifera HOM05D006896 ORTHO05D007622 1.7e-29 133.7 158 50.6
Thecc.01G002700 Theobroma cacao HOM05D006896 ORTHO05D007622 8.3e-29 131.3 172 45.9
Potri.003G047600 Populus trichocarpa HOM05D006896 ORTHO05D007622 2.4e-28 129.8 156 51.3
CANSAT21G0002 Cannabis sativa HOM05D006896 ORTHO05D007622 2.7e-27 126.3 157 52.9
MD15G1357300 Malus domestica HOM05D006896 ORTHO05D007622 3.5e-27 125.9 160 49.4
Aqoxy3G03866 Aquilegia oxysepala HOM05D006896 ORTHO05D007622 5.9e-27 125.2 155 49.0
Nitab4.5_0002546g0010 Nicotiana tabacum HOM05D006896 ORTHO05D007622 1.0e-26 124.4 153 48.4
QL06p022383 Quercus lobata HOM05D006896 ORTHO05D007622 3.8e-26 122.5 174 46.0
Haze_24358 Corylus avellana HOM05D006896 ORTHO05D007622 6.6e-26 121.7 164 44.5
Nitab4.5_0001057g0240 Nicotiana tabacum HOM05D006896 ORTHO05D007622 2.5e-25 119.8 153 47.7
Phvul.006G182200 Phaseolus vulgaris HOM05D006896 ORTHO05D007622 5.6e-25 118.6 161 48.4
Peaxi162Scf00152g00734 Petunia axillaris HOM05D006896 ORTHO05D007622 9.5e-25 117.9 152 47.4
Sabra03G0029600 Salix brachista HOM05D000996 ORTHO05D000858 2.1e-24 116.7 160 46.2
TWI75G0052 Tripterygium wilfordii HOM05D006896 ORTHO05D007622 2.8e-24 116.3 148 52.0
MD08G1165000 Malus domestica HOM05D006896 ORTHO05D007622 6.1e-24 115.2 165 47.3
CsaV3_7G035230 Cucumis sativus L. HOM05D006896 ORTHO05D007622 8.9e-23 111.3 151 43.7
AL6G51750 Arabidopsis lyrata HOM05D006896 ORTHO05D007622 1.5e-22 110.5 158 42.4
THA.LOC104825918 Tarenaya hassleriana HOM05D006896 ORTHO05D007622 1.5e-22 110.5 157 42.7
Actinidia05615 Actinidia chinensis HOM05D006896 ORTHO05D007622 2.0e-22 110.2 165 45.5
MELO3C024432.2 Cucumis melo HOM05D006896 ORTHO05D007622 2.0e-22 110.2 153 45.1
Thhalv10023695m.g Eutrema salsugineum HOM05D006896 ORTHO05D007622 2.6e-22 109.8 156 43.6
PSO210G5688 Papaver somniferum HOM05D006896 ORTHO05D007622 4.4e-22 109.0 169 43.2
BcaB05g23986 Brassica carinata HOM05D006896 ORTHO05D007622 9.8e-22 107.8 160 46.2
Cfa015335 Carpinus fangiana HOM05D006896 ORTHO05D007622 9.8e-22 107.8 161 44.1
DCAR_021683 Daucus carota HOM05D006896 ORTHO05D007622 1.7e-21 107.1 158 47.5
Glyma.15G077800 Glycine max HOM05D006896 ORTHO05D007622 4.9e-21 105.5 141 46.1
Glyma.15G171400 Glycine max HOM05D006896 ORTHO05D007622 4.9e-21 105.5 141 46.1
A07p06970 Brassica napus HOM05D006896 ORTHO05D007622 8.3e-21 104.8 153 43.8
Thhalv10028974m.g Eutrema salsugineum HOM05D006896 ORTHO05D007622 8.3e-21 104.8 151 43.0
Lalb_Chr02g0144491 Lupinus albus HOM05D006896 ORTHO05D007622 1.1e-20 104.4 151 45.0
VMungo0540G0426 Vigna mungo HOM05D006896 ORTHO05D007622 1.1e-20 104.4 160 46.2
DCAR_023372 Daucus carota HOM05D001895 ORTHO05D002082 1.4e-20 104.0 157 46.5
Cc04_g02450 Coffea canephora HOM05D006896 ORTHO05D007622 1.8e-20 103.6 157 40.1
Aa31LG5G1310 Aethionema arabicum HOM05D006896 ORTHO05D007622 4.1e-20 102.4 142 43.7
BcaC03g16098 Brassica carinata HOM05D006896 ORTHO05D007622 4.1e-20 102.4 142 46.5
A02p24490 Brassica napus HOM05D006896 ORTHO05D007622 4.1e-20 102.4 142 46.5
C02p38670 Brassica napus HOM05D006896 ORTHO05D007622 4.1e-20 102.4 142 46.5
BolC2t09885H Brassica oleracea HOM05D006896 ORTHO05D007622 4.1e-20 102.4 142 46.5
BraA02t07439Z Brassica rapa HOM05D006896 ORTHO05D007622 4.1e-20 102.4 142 46.5
PGSC0003DMG401020091 Solanum tuberosum HOM05D006896 ORTHO05D007622 5.4e-20 102.1 153 42.5
Cc02_g30070 Coffea canephora HOM05D006896 ORTHO05D007622 9.2e-20 101.3 153 40.5
Hund07447 Selenicereus undatus HOM05D006896 ORTHO05D007622 1.6e-19 100.5 154 40.9
EL10Ac4g10121 Beta vulgaris HOM05D006896 ORTHO05D007622 4.6e-19 99.0 157 44.6
EL10Ac4g10168 Beta vulgaris HOM05D006896 ORTHO05D007622 4.6e-19 99.0 157 44.6
Sc15g0001740 Simmondsia chinensis HOM05D006896 ORTHO05D007622 6.0e-19 98.6 157 38.2
PGSC0003DMG400024908 Solanum tuberosum HOM05D006896 ORTHO05D007622 7.8e-19 98.2 154 42.9
Carub.0006s3560 Capsella rubella HOM05D006896 ORTHO05D007622 1.3e-18 97.4 151 41.1
COL.COLO4_30531 Corchorus olitorius HOM05D006896 ORTHO05D007622 1.3e-18 97.4 154 39.6
RhsimUnG0044500 Rhododendron simsii HOM05D006896 ORTHO05D007622 5.0e-18 95.5 128 46.9
Sp6g01500 Schrenkiella parvula HOM05D006896 ORTHO05D007622 5.0e-18 95.5 124 44.4
Sopen06g034890 Solanum pennellii HOM05D006896 ORTHO05D007622 5.0e-18 95.5 155 41.9
Ah.06g194440 Amaranthus hybridus HOM05D006896 ORTHO05D007622 6.6e-18 95.1 159 40.9
arahy.Tifrunner.gnm1.ann1.530D0B Arachis hypogaea HOM05D006896 ORTHO05D007622 1.5e-17 94.0 137 42.3
arahy.Tifrunner.gnm1.ann1.73V7U9 Arachis hypogaea HOM05D006896 ORTHO05D007622 1.5e-17 94.0 143 42.0
C07p10600 Brassica napus HOM05D006896 ORTHO05D007622 1.5e-17 94.0 159 40.3
BolC7t41525H Brassica oleracea HOM05D006896 ORTHO05D007622 1.5e-17 94.0 159 40.3
BraA07t28487Z Brassica rapa HOM05D006896 ORTHO05D007622 2.5e-17 93.2 153 40.5
AT4G01590 Arabidopsis thaliana HOM05D006896 ORTHO05D007622 9.5e-17 91.3 143 39.9
CAN.G855.24 Capsicum annuum HOM05D006896 ORTHO05D007622 1.6e-16 90.5 156 42.3
EL10Ac4g10160 Beta vulgaris HOM05D006896 ORTHO05D007622 2.1e-16 90.1 140 44.3
EL10Ac4g10155 Beta vulgaris HOM05D006896 ORTHO05D007622 2.8e-16 89.7 140 44.3
Sed0020352 Sechium edule HOM05D006896 ORTHO05D007622 2.8e-16 89.7 156 41.0
ClCG09G000270 Citrullus lanatus HOM05D006896 ORTHO05D007622 4.7e-16 89.0 115 45.2
Duzib235G0563 Durio zibethinus HOM05D006896 ORTHO05D007622 6.2e-16 88.6 160 35.6
EL10Ac4g10131 Beta vulgaris HOM05D006896 ORTHO05D007622 1.8e-15 87.0 140 42.9
Zm00001eb122950 Zea mays HOM05D006896 ORTHO05D007622 3.1e-15 86.3 140 41.4
EL10Ac4g10129 Beta vulgaris HOM05D006896 ORTHO05D007622 5.2e-15 85.5 140 42.1
BcaC06g35810 Brassica carinata HOM05D006896 ORTHO05D007622 8.9e-15 84.7 135 40.0
TAR636G1722 Trochodendron aralioides HOM05D006896 ORTHO05D007622 2.0e-14 83.6 102 46.1
Solyc06g083505.1 Solanum lycopersicum HOM05D006896 ORTHO05D007622 2.6e-14 83.2 140 40.7
ECA240G1433 Erigeron canadensis HOM05D006896 ORTHO05D007622 4.4e-14 82.4 160 39.4
AT4G35685 Arabidopsis thaliana HOM05D006896 ORTHO05D007622 9.8e-14 81.3 156 38.5
unitig_27.g25077 Utricularia gibba HOM05D006896 ORTHO05D007622 9.8e-14 81.3 146 37.7
CARHR250080 Cardamine hirsuta HOM05D006896 ORTHO05D007622 2.2e-13 80.1 140 39.3
CiPaw.04G075800 Carya illinoinensis HOM05D006896 ORTHO05D007622 6.4e-13 78.6 135 40.7
HanXRQChr04g0122251 Helianthus annuus HOM05D006896 ORTHO05D007622 6.4e-13 78.6 159 37.7
Lj2g0027443 Lotus japonicus HOM05D006896 ORTHO05D007622 6.4e-13 78.6 151 39.7
Carub.0003s1963 Capsella rubella HOM05D006896 ORTHO05D007622 3.2e-12 76.3 140 37.1
COL.COLO4_18518 Corchorus olitorius HOM05D006896 ORTHO05D007622 5.4e-12 75.5 134 35.8
Lsat_1_v5_gn_7_60640 Lactuca sativa HOM05D006896 ORTHO05D007622 1.2e-11 74.3 155 35.5
Mapoly0123s0021 Marchantia polymorpha HOM05D015888 ORTHO05D007622 1.2e-11 74.3 179 32.4
Os07g0611600 Oryza sativa ssp. japonica HOM05D006896 ORTHO05D007622 2.0e-11 73.6 140 34.3
Migut.I00962 Erythranthe guttata HOM05D006896 ORTHO05D007622 3.5e-11 72.8 160 36.2
Prupe.1G504500 Prunus persica HOM05D006896 ORTHO05D007622 3.5e-11 72.8 155 37.4
ECA233G6105 Erigeron canadensis HOM05D006896 ORTHO05D007622 4.6e-11 72.4 155 33.5
Prupe.1G582300 Prunus persica HOM05D006896 ORTHO05D007622 4.6e-11 72.4 142 38.7
BcaB06g26744 Brassica carinata HOM05D006896 ORTHO05D007622 1.1e-09 67.8 157 34.4
BcaB06g28560 Brassica carinata HOM05D006896 ORTHO05D007622 1.1e-09 67.8 175 34.9
PSO210G1164 Papaver somniferum HOM05D006896 ORTHO05D007622 3.3e-09 66.2 115 37.4
FAN20G0540 Fragaria x ananassa HOM05D018050 ORTHO05D022598 9.5e-09 64.7 171 35.1
Potri.014G085200 Populus trichocarpa HOM05D006896 ORTHO05D007622 9.5e-09 64.7 145 35.2
AUR62042888 Chenopodium quinoa HOM05D000493 ORTHO05D007622 1.2e-08 64.3 83 47.0
FAN27G1591 Fragaria x ananassa HOM05D018050 ORTHO05D022598 1.6e-08 63.9 171 35.1
FvH4_2g26230 Fragaria vesca HOM05D018050 ORTHO05D022598 2.1e-08 63.5 171 35.1
SGA_v2.0_scaffold265G46057 Striga asiatica HOM05D007352 ORTHO05D009389 2.1e-08 63.5 161 32.9
Medtr3g023230 Medicago truncatula HOM05D006896 ORTHO05D007622 3.1e-07 59.7 149 35.6
RcHm_v2.0_Chr6g0294801 Rosa chinensis HOM05D018050 ORTHO05D022598 1.5e-06 57.4 162 35.2


User provided reference genes

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