Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03064 Eucalyptus grandis HOM05D005732 ORTHO05D007062 2.9e-117 425.2 217 100.0
Dinv37994 Davidia involucrata HOM05D005732 ORTHO05D007062 7.1e-71 271.2 217 66.4
Lj5A55G45 Lonicera japonica HOM05D005732 ORTHO05D007062 7.1e-71 271.2 217 65.9
Cfa003665 Carpinus fangiana HOM05D005732 ORTHO05D007062 1.3e-69 266.9 203 71.4
Haze_15828 Corylus avellana HOM05D005732 ORTHO05D007062 6.6e-69 264.6 203 70.9
Potri.003G050400 Populus trichocarpa HOM05D005732 ORTHO05D007062 6.6e-69 264.6 220 63.6
Manes.04G132400 Manihot esculenta HOM05D005732 ORTHO05D007062 8.6e-69 264.2 215 64.7
CiPaw.01G232900 Carya illinoinensis HOM05D005732 ORTHO05D007062 1.6e-67 260.0 208 65.9
TAR383G0371 Trochodendron aralioides HOM05D005732 ORTHO05D007062 1.6e-67 260.0 218 63.3
Migut.I00910 Erythranthe guttata HOM05D005732 ORTHO05D007062 2.8e-67 259.2 212 62.7
Hma1.2p1_1689F.1_g297591 Hydrangea macrophylla HOM05D005732 ORTHO05D007062 3.6e-67 258.8 217 63.6
CSS0002541 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 8.1e-67 257.7 217 62.7
Lj3g0008110 Lotus japonicus HOM05D005732 ORTHO05D007062 8.1e-67 257.7 208 66.3
Glyma.07G017000 Glycine max HOM05D005732 ORTHO05D007062 1.8e-66 256.5 200 67.5
CSS0032474 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 2.3e-66 256.1 217 62.7
MSTRG.22648 Avicennia marina HOM05D005732 ORTHO05D007062 4.0e-66 255.4 210 62.9
VMungo0331G0354 Vigna mungo HOM05D005732 ORTHO05D007062 4.0e-66 255.4 202 66.8
TAR626G0582 Trochodendron aralioides HOM05D005732 ORTHO05D007062 5.2e-66 255.0 217 61.8
Potri.001G188000 Populus trichocarpa HOM05D005732 ORTHO05D007062 1.2e-65 253.8 215 61.4
Cc04_g02710 Coffea canephora HOM05D005732 ORTHO05D007062 2.0e-65 253.1 216 63.4
MD09G1205900 Malus domestica HOM05D005732 ORTHO05D007062 2.6e-65 252.7 186 68.8
Phvul.010G146500 Phaseolus vulgaris HOM05D005732 ORTHO05D007062 4.4e-65 251.9 200 66.5
Manes.11G035100 Manihot esculenta HOM05D005732 ORTHO05D007062 9.9e-65 250.8 215 61.4
MBI04_g40322_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 1.7e-64 250.0 217 56.7
PGR102G2433 Punica granatum HOM05D005732 ORTHO05D007062 2.9e-64 249.2 215 61.4
Sabra03G0028400 Salix brachista HOM05D005732 ORTHO05D007062 8.4e-64 247.7 210 62.4
arahy.Tifrunner.gnm1.ann1.U1FWF5 Arachis hypogaea HOM05D005732 ORTHO05D007062 1.1e-63 247.3 206 64.1
arahy.Tifrunner.gnm1.ann1.Z2G3LM Arachis hypogaea HOM05D005732 ORTHO05D007062 1.1e-63 247.3 206 64.1
RcHm_v2.0_Chr2g0140051 Rosa chinensis HOM05D005732 ORTHO05D007062 3.2e-63 245.7 168 73.2
Lalb_Chr04g0262901 Lupinus albus HOM05D005732 ORTHO05D007062 5.4e-63 245.0 208 63.9
Psat4g197440 Pisum sativum HOM05D005732 ORTHO05D007062 7.1e-63 244.6 202 62.9
CSS0006657 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 9.2e-63 244.2 216 59.3
Nn2g11615 Nelumbo nucifera HOM05D005732 ORTHO05D007062 1.2e-62 243.8 218 60.1
Lsat_1_v5_gn_4_99921 Lactuca sativa HOM05D005732 ORTHO05D007062 1.6e-62 243.4 219 58.9
Thecc.06G097400 Theobroma cacao HOM05D005732 ORTHO05D007062 2.1e-62 243.0 221 62.4
Aqoxy7G01470 Aquilegia oxysepala HOM05D005732 ORTHO05D007062 2.7e-62 242.7 219 54.3
Actinidia09002 Actinidia chinensis HOM05D005732 ORTHO05D007062 3.5e-62 242.3 218 61.0
SalBow1G6954 Salvia bowleyana HOM05D005732 ORTHO05D007062 7.8e-62 241.1 208 61.5
COL.COLO4_30485 Corchorus olitorius HOM05D000181 ORTHO05D008575 1.0e-61 240.7 198 66.7
Hund06653 Selenicereus undatus HOM05D005732 ORTHO05D007062 1.0e-61 240.7 195 65.6
AUR62022181 Chenopodium quinoa HOM05D005732 ORTHO05D007062 1.7e-61 240.0 212 59.9
SalBow2G2342 Salvia bowleyana HOM05D005732 ORTHO05D007062 3.0e-61 239.2 208 61.1
Sabra01G0152800 Salix brachista HOM05D005732 ORTHO05D007062 3.9e-61 238.8 228 56.1
Duzib192G0605 Durio zibethinus HOM05D005732 ORTHO05D007062 6.6e-61 238.0 223 59.6
vmacro16985 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 6.6e-61 238.0 213 59.6
Gohir.A02G118700 Gossypium hirsutum HOM05D005732 ORTHO05D007062 8.6e-61 237.7 226 59.7
FAN05G5290 Fragaria x ananassa HOM05D005732 ORTHO05D007062 1.9e-60 236.5 168 70.8
FAN14G0018 Fragaria x ananassa HOM05D005732 ORTHO05D007062 1.9e-60 236.5 215 59.5
Prupe.3G061300 Prunus persica HOM05D005732 ORTHO05D007062 1.9e-60 236.5 185 66.5
Sopen03g039690 Solanum pennellii HOM05D005732 ORTHO05D007062 1.9e-60 236.5 214 59.3
FAN02G4216 Fragaria x ananassa HOM05D005732 ORTHO05D007062 3.3e-60 235.7 214 59.3
Solyc03g120870.3 Solanum lycopersicum HOM05D005732 ORTHO05D007062 3.3e-60 235.7 214 58.9
Oeu050609.1 Olea europaea HOM05D005732 ORTHO05D007062 4.3e-60 235.3 202 60.4
MSTRG.11037 Avicennia marina HOM05D005732 ORTHO05D007062 5.6e-60 235.0 219 57.5
FvH4_6g32160 Fragaria vesca HOM05D005732 ORTHO05D007062 5.6e-60 235.0 215 59.5
AUR62031884 Chenopodium quinoa HOM05D005732 ORTHO05D007062 9.6e-60 234.2 206 61.7
TWI18G0404 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 2.8e-59 232.6 204 62.3
Sc15g0001950 Simmondsia chinensis HOM05D005732 ORTHO05D007062 3.6e-59 232.3 204 59.8
EL10Ac9g22102 Beta vulgaris HOM05D005732 ORTHO05D007062 4.7e-59 231.9 207 61.8
Medtr8g013900 Medicago truncatula HOM05D005732 ORTHO05D007062 4.7e-59 231.9 197 62.9
PSO173G0088 Papaver somniferum HOM05D005732 ORTHO05D007062 6.2e-59 231.5 210 54.3
QL05p020542 Quercus lobata HOM05D005732 ORTHO05D007062 6.2e-59 231.5 214 58.9
Cpa.g.c29422 Carica papaya HOM05D005732 ORTHO05D007062 1.1e-58 230.7 222 59.0
Lsat_1_v5_gn_1_34600 Lactuca sativa HOM05D005732 ORTHO05D007062 1.4e-58 230.3 213 56.8
TWI75G0681 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 1.4e-58 230.3 169 66.9
Gorai.003G063300 Gossypium raimondii HOM05D005732 ORTHO05D007062 2.4e-58 229.6 228 58.3
CiPaw.02G147000 Carya illinoinensis HOM05D005732 ORTHO05D007062 5.2e-58 228.4 200 60.0
DCAR_016197 Daucus carota HOM05D005732 ORTHO05D007062 5.2e-58 228.4 210 56.2
PGSC0003DMG400002535 Solanum tuberosum HOM05D005732 ORTHO05D007062 5.2e-58 228.4 214 57.0
Peaxi162Scf00038g00842 Petunia axillaris HOM05D005732 ORTHO05D007062 7.6e-57 224.6 217 55.8
FAN09G2308 Fragaria x ananassa HOM05D005732 ORTHO05D007062 9.9e-57 224.2 214 58.4
GSVIVG01017014001 Vitis vinifera HOM05D005732 ORTHO05D007062 9.9e-57 224.2 147 74.1
CANSAT56G1056 Cannabis sativa HOM05D005732 ORTHO05D007062 1.3e-56 223.8 218 56.4
HanXRQChr09g0275891 Helianthus annuus HOM05D005732 ORTHO05D007062 1.3e-56 223.8 171 64.3
CsaV3_7G035420 Cucumis sativus L. HOM05D005732 ORTHO05D007062 1.7e-56 223.4 208 57.7
HanXRQChr16g0501231 Helianthus annuus HOM05D005732 ORTHO05D007062 8.4e-56 221.1 183 61.2
ECA232G1272 Erigeron canadensis HOM05D000181 ORTHO05D008575 3.2e-55 219.2 199 57.8
ECA247G0174 Erigeron canadensis HOM05D005732 ORTHO05D007062 3.2e-55 219.2 222 54.1
MELO3C024451.2 Cucumis melo HOM05D005732 ORTHO05D007062 5.4e-55 218.4 206 57.3
PSO832G1217 Papaver somniferum HOM05D005732 ORTHO05D007062 5.4e-55 218.4 213 52.6
Sed0001710 Sechium edule HOM05D005732 ORTHO05D007062 9.3e-55 217.6 205 54.6
HanXRQChr02g0032191 Helianthus annuus HOM05D005732 ORTHO05D007062 1.6e-54 216.9 205 56.1
Lj9A511T51 Lonicera japonica HOM05D005732 ORTHO05D007062 2.1e-54 216.5 248 52.8
Ciclev10026574m.g Citrus clementina HOM05D005732 ORTHO05D007062 4.6e-54 215.3 186 58.6
Gohir.D03G059300 Gossypium hirsutum HOM05D005732 ORTHO05D007062 6.6e-53 211.5 229 55.9
DCAR_026348 Daucus carota HOM05D005732 ORTHO05D007062 9.6e-52 207.6 188 58.0
TPR.G35018 Trifolium pratense HOM05D005732 ORTHO05D007062 6.2e-51 204.9 207 54.6
MBI19_g26309_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 9.0e-50 201.1 216 49.5
BcaB06g25723 Brassica carinata HOM05D005732 ORTHO05D007062 6.0e-46 188.3 171 54.4
BcaC05g28895 Brassica carinata HOM05D005732 ORTHO05D007062 1.8e-45 186.8 170 54.7
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 1.8e-45 186.8 170 54.7
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 1.8e-45 186.8 170 54.7
Rhsim12G0202300 Rhododendron simsii HOM05D005732 ORTHO05D007062 1.8e-45 186.8 222 54.1
Ca_23241_v3 Cicer arietinum L. HOM05D005732 ORTHO05D007062 3.0e-45 186.0 200 52.0
Atru.chr1.3497 Acer truncatum HOM05D005732 ORTHO05D007062 2.5e-44 183.0 194 51.0
BraA05t22147Z Brassica rapa HOM05D005732 ORTHO05D007062 3.3e-44 182.6 170 53.5
Duzib160G0019 Durio zibethinus HOM05D005732 ORTHO05D007062 4.3e-44 182.2 178 60.1
Sp3g14670 Schrenkiella parvula HOM05D005732 ORTHO05D007062 4.3e-44 182.2 169 54.4
AT3G16300 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 7.4e-44 181.4 179 50.8
AL3G29050 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 1.6e-43 180.3 178 50.6
Carub.0003s1605 Capsella rubella HOM05D005732 ORTHO05D007062 1.6e-43 180.3 172 52.3
Thhalv10021518m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 6.2e-43 178.3 170 52.9
THA.LOC104817966 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 1.2e-41 174.1 172 51.7
BraA03t13125Z Brassica rapa HOM05D005732 ORTHO05D007062 2.0e-41 173.3 169 50.9
Os01g0725400 Oryza sativa ssp. japonica HOM05D005732 ORTHO05D007062 4.5e-41 172.2 158 51.9
BcaB04g18894 Brassica carinata HOM05D005732 ORTHO05D007062 5.8e-41 171.8 170 51.8
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 5.8e-41 171.8 130 66.2
A03p39750 Brassica napus HOM05D005732 ORTHO05D007062 7.6e-41 171.4 169 50.9
unitig_46.g18459 Utricularia gibba HOM05D005732 ORTHO05D007062 7.6e-41 171.4 178 53.4
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 2.2e-40 169.9 176 50.0
CARHR091510 Cardamine hirsuta HOM05D005732 ORTHO05D007062 6.4e-40 168.3 206 42.7
BolC3t17024H Brassica oleracea HOM05D005732 ORTHO05D007062 8.4e-40 167.9 169 49.1
THA.LOC104813551 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 1.1e-39 167.5 146 54.8
BcaC01g03830 Brassica carinata HOM05D005732 ORTHO05D007062 1.4e-39 167.2 169 48.5
BolC3t17097H Brassica oleracea HOM05D005732 ORTHO05D007062 1.4e-39 167.2 169 48.5
C03p48190 Brassica napus HOM05D005732 ORTHO05D007062 5.5e-39 165.2 164 48.8
Lj9C524T15 Lonicera japonica HOM05D005732 ORTHO05D007062 1.2e-38 164.1 215 48.4
Prupe.3G065500 Prunus persica HOM05D005732 ORTHO05D007062 2.1e-38 163.3 114 72.8
MBI04_g44953_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 6.0e-38 161.8 112 67.0
AT1G79780 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 1.6e-35 153.7 165 47.3
AL2G41770 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 2.8e-35 152.9 184 45.7
Carub.0002s2773 Capsella rubella HOM05D005732 ORTHO05D007062 2.8e-35 152.9 168 48.2
Aa31LG4G50 Aethionema arabicum HOM05D005732 ORTHO05D007062 3.7e-35 152.5 175 47.4
Thhalv10019180m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 2.4e-34 149.8 159 49.1
Sp5g35990 Schrenkiella parvula HOM05D005732 ORTHO05D007062 6.9e-34 148.3 167 45.5
A07p26310 Brassica napus HOM05D005732 ORTHO05D007062 2.2e-32 143.3 159 46.5
BraA07t30275Z Brassica rapa HOM05D005732 ORTHO05D007062 2.2e-32 143.3 159 46.5
C06p28700 Brassica napus HOM05D005732 ORTHO05D007062 4.9e-32 142.1 184 42.9
BolC6t38039H Brassica oleracea HOM05D005732 ORTHO05D007062 6.5e-32 141.7 159 45.9
vmacro17018 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 1.0e-29 134.4 150 49.3
CDE02G4152 Ceratophyllum demersum HOM05D005732 ORTHO05D007062 1.1e-26 124.4 207 35.3
ClCG09G000040 Citrullus lanatus HOM05D005732 ORTHO05D007062 1.5e-25 120.6 105 56.2
Dinv30452 Davidia involucrata HOM05D005732 ORTHO05D007062 4.5e-25 119.0 120 55.8
ATR0705G122 Amborella trichopoda HOM05D005732 ORTHO05D007062 2.9e-24 116.3 142 45.1
ATR0705G087 Amborella trichopoda HOM05D005732 ORTHO05D007062 1.6e-19 100.5 66 69.7
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 4.6e-14 82.4 102 49.0
CARHR074750 Cardamine hirsuta HOM05D005732 ORTHO05D007062 3.9e-13 79.3 75 56.0
Sc15g0002000 Simmondsia chinensis HOM05D005732 ORTHO05D007062 1.4e-10 70.9 43 74.4
Cpa.g.sc16.115 Carica papaya HOM05D001151 ORTHO05D001504 9.1e-10 68.2 162 32.7
PGR004G2765 Punica granatum HOM05D001151 ORTHO05D001504 1.5e-09 67.4 206 29.6
Lj6A670T85 Lonicera japonica HOM05D001151 ORTHO05D001504 3.4e-09 66.2 163 29.4
TAR374G1504 Trochodendron aralioides HOM05D003184 ORTHO05D000394 7.7e-09 65.1 167 26.3
MELO3C026176.2 Cucumis melo HOM05D003184 ORTHO05D000394 1.7e-08 63.9 159 30.8
Potri.008G205000 Populus trichocarpa HOM05D001151 ORTHO05D001504 2.2e-08 63.5 178 30.9
Mapoly0159s0027 Marchantia polymorpha HOM05D001151 ORTHO05D001504 2.9e-08 63.2 183 29.5
PGR083G0980 Punica granatum HOM05D003184 ORTHO05D000394 3.8e-08 62.8 151 31.1
CsaV3_1G000220 Cucumis sativus L. HOM05D003184 ORTHO05D000394 6.5e-08 62.0 159 30.2
PGR142G2053 Punica granatum HOM05D003184 ORTHO05D000394 6.5e-08 62.0 152 29.6
EL10Ac3g06571 Beta vulgaris HOM05D001151 ORTHO05D001504 8.5e-08 61.6 181 26.5
CARHR049040 Cardamine hirsuta HOM05D005732 ORTHO05D007062 1.1e-07 61.2 40 70.0
Aqoxy2G03101 Aquilegia oxysepala HOM05D001151 ORTHO05D001504 1.9e-07 60.5 171 28.7
FAN05G1263 Fragaria x ananassa HOM05D003184 ORTHO05D000394 2.5e-07 60.1 150 24.7
Glyma.17G007400 Glycine max HOM05D002232 ORTHO05D002323 3.2e-07 59.7 165 28.5
BcaC06g32947 Brassica carinata HOM05D001151 ORTHO05D001504 4.2e-07 59.3 163 29.4
CARHR232440 Cardamine hirsuta HOM05D003184 ORTHO05D000394 4.2e-07 59.3 154 29.9
Hma1.2p1_0078F.1_g040790 Hydrangea macrophylla HOM05D001151 ORTHO05D001504 5.5e-07 58.9 167 28.1
Glyma.07G266800 Glycine max HOM05D002232 ORTHO05D002323 7.2e-07 58.5 165 27.9
Sabra08G0157000 Salix brachista HOM05D001151 ORTHO05D001504 7.2e-07 58.5 180 30.0
ATR1098G060 Amborella trichopoda HOM05D001151 ORTHO05D006836 1.6e-06 57.4 187 25.7
AUR62041204 Chenopodium quinoa HOM05D001151 ORTHO05D001504 1.6e-06 57.4 184 27.7
EL10Ac6g13375 Beta vulgaris HOM05D003184 ORTHO05D000394 2.1e-06 57.0 164 25.0
ECA247G0345 Erigeron canadensis HOM05D002232 ORTHO05D002323 2.1e-06 57.0 156 26.3
Sp7g23030 Schrenkiella parvula HOM05D003184 ORTHO05D000394 2.1e-06 57.0 156 29.5
CANSAT56G1351 Cannabis sativa HOM05D002232 ORTHO05D002323 3.6e-06 56.2 162 26.5
MBI14_g11685_MAGBIO Magnolia biondii HOM05D005509 ORTHO05D006411 3.6e-06 56.2 158 24.1
RcHm_v2.0_Chr1g0366461 Rosa chinensis HOM05D005509 ORTHO05D006411 4.7e-06 55.8 154 27.9
HanXRQChr13g0387581 Helianthus annuus HOM05D001151 ORTHO05D001504 6.1e-06 55.5 191 26.7
RcHm_v2.0_Chr7g0189121 Rosa chinensis HOM05D003184 ORTHO05D000394 6.1e-06 55.5 156 27.6


User provided reference genes

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