Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 6.7e-96 354.0 175 100.0
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 2.8e-78 295.4 173 82.1
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 3.1e-69 265.4 171 74.3
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 3.1e-69 265.4 169 74.0
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 9.1e-69 263.8 170 74.1
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 9.1e-69 263.8 169 74.0
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 2.2e-67 259.2 169 71.0
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 5.5e-66 254.6 169 71.6
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 7.2e-66 254.2 170 71.2
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 1.6e-65 253.1 169 71.0
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 2.7e-65 252.3 170 70.6
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 1.4e-64 250.0 169 69.8
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 4.4e-63 245.0 171 68.4
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 4.4e-63 245.0 171 70.2
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 5.7e-63 244.6 172 67.4
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 5.7e-63 244.6 170 66.5
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 7.4e-63 244.2 172 69.8
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 9.7e-63 243.8 172 69.8
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 9.7e-63 243.8 163 67.5
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 1.3e-62 243.4 172 70.3
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 1.7e-62 243.0 174 67.2
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 4.8e-62 241.5 173 65.3
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 4.8e-62 241.5 173 65.3
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 8.2e-62 240.7 170 65.9
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 1.1e-61 240.4 174 67.8
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.1e-61 240.4 176 64.8
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 1.1e-61 240.4 171 66.7
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 1.4e-61 240.0 173 65.9
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 1.4e-61 240.0 172 66.3
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 1.4e-61 240.0 174 67.8
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 1.4e-61 240.0 173 63.0
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 1.8e-61 239.6 171 67.8
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 3.1e-61 238.8 173 65.9
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 3.1e-61 238.8 176 64.2
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 3.1e-61 238.8 174 66.7
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 3.1e-61 238.8 172 63.4
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 4.1e-61 238.4 172 67.4
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 4.1e-61 238.4 176 64.8
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 9.1e-61 237.3 174 66.7
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 9.1e-61 237.3 171 67.3
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 9.1e-61 237.3 171 66.7
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 1.2e-60 236.9 174 65.5
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 2.0e-60 236.1 171 67.3
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 3.5e-60 235.3 176 63.1
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 4.5e-60 235.0 174 66.1
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 4.5e-60 235.0 173 65.9
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 5.9e-60 234.6 173 64.2
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 1.3e-59 233.4 170 65.3
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 2.9e-59 232.3 172 65.7
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 8.5e-59 230.7 171 64.9
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 1.5e-58 229.9 175 63.4
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 4.2e-58 228.4 171 64.3
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 4.2e-58 228.4 173 64.2
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 7.2e-58 227.6 167 64.1
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 9.4e-58 227.3 165 65.5
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 9.4e-58 227.3 171 64.3
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 2.1e-57 226.1 172 62.8
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 2.1e-57 226.1 166 66.3
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 3.6e-57 225.3 171 63.2
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 3.6e-57 225.3 175 61.7
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 4.7e-57 224.9 171 62.6
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 6.1e-57 224.6 172 61.6
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 6.1e-57 224.6 169 65.7
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 6.1e-57 224.6 169 65.7
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 1.8e-56 223.0 172 62.8
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 3.0e-56 222.2 172 61.0
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 3.0e-56 222.2 169 65.1
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 1.2e-55 220.3 172 60.5
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.5e-55 219.9 169 64.5
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 1.5e-55 219.9 195 59.0
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 2.0e-55 219.5 172 59.9
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.0e-55 219.5 165 63.6
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 2.6e-55 219.2 172 60.5
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 2.6e-55 219.2 172 59.9
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 2.6e-55 219.2 172 59.9
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 3.4e-55 218.8 169 59.2
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 5.7e-55 218.0 169 59.2
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 1.7e-54 216.5 169 63.3
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 2.2e-54 216.1 165 61.8
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.2e-54 216.1 165 62.4
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 2.2e-54 216.1 203 57.1
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 8.3e-54 214.2 174 63.2
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 1.4e-53 213.4 197 55.8
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 1.8e-53 213.0 169 58.0
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 1.8e-53 213.0 169 58.0
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 3.1e-53 212.2 166 60.8
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 4.1e-53 211.8 169 65.1
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 2.7e-52 209.1 170 61.8
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 3.5e-52 208.8 166 59.0
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 4.5e-52 208.4 200 54.5
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 7.7e-52 207.6 172 55.8
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 7.7e-52 207.6 148 68.2
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 1.3e-51 206.8 199 54.8
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 2.2e-51 206.1 165 61.2
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 2.2e-51 206.1 174 53.4
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 2.9e-51 205.7 201 54.7
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 5.0e-51 204.9 239 48.5
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 1.5e-50 203.4 166 57.2
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 1.5e-50 203.4 205 52.7
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 1.9e-50 203.0 172 54.7
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 1.9e-50 203.0 205 51.2
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 1.9e-50 203.0 205 51.7
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 3.2e-50 202.2 146 68.5
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 4.2e-50 201.8 140 70.0
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 5.5e-50 201.4 205 52.7
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 9.4e-50 200.7 192 54.2
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 1.2e-49 200.3 185 56.8
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 2.1e-49 199.5 164 56.1
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 1.0e-48 197.2 204 51.5
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 1.0e-48 197.2 219 51.1
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 6.8e-48 194.5 196 52.6
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 2.0e-47 193.0 138 68.1
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 4.4e-47 191.8 167 52.7
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 7.5e-47 191.0 201 48.8
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 2.8e-46 189.1 169 56.8
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 1.8e-45 186.4 166 51.8
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 9.1e-45 184.1 167 51.5
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 9.1e-45 184.1 157 59.2
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 5.9e-44 181.4 169 52.7
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 5.9e-44 181.4 169 52.7
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 6.1e-41 171.4 116 70.7
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 6.1e-41 171.4 190 48.9
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 8.0e-41 171.0 123 65.0
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 2.0e-39 166.4 174 52.3
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 2.6e-39 166.0 172 50.6
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 7.5e-39 164.5 170 47.6
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 8.3e-38 161.0 171 46.8
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 2.4e-37 159.5 149 50.3
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 2.3e-35 152.9 119 61.3
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 2.5e-34 149.4 111 63.1
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 7.3e-34 147.9 123 56.1
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 9.5e-34 147.5 116 60.3
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.2e-33 147.1 169 48.5
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 1.2e-31 140.6 108 60.2
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 3.4e-31 139.0 127 52.0
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 2.2e-30 136.3 169 46.2
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 6.4e-30 134.8 94 62.8
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 6.4e-30 134.8 164 47.6
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 4.1e-29 132.1 171 43.9
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 9.2e-29 131.0 163 45.4
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 1.2e-28 130.6 171 35.7
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 1.6e-28 130.2 95 67.4
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 1.3e-27 127.1 113 56.6
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 1.1e-26 124.0 111 50.5
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 4.4e-23 112.1 79 70.9
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 5.4e-21 105.1 89 55.1
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 2.5e-18 96.3 175 30.3
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 3.3e-18 95.9 123 45.5
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 5.6e-18 95.1 61 68.9
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 5.6e-18 95.1 56 80.4
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 1.3e-14 84.0 62 69.4
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.2e-14 83.2 54 74.1
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 7.1e-13 78.2 127 34.6
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 2.7e-12 76.3 67 53.7
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 5.2e-08 62.0 112 33.9
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.8e-06 55.8 49 53.1


User provided reference genes

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