Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 0.0e+00 1629.0 875 100.0
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 0.0e+00 1087.0 817 70.0
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 3.3e-300 1035.0 819 66.3
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 5.5e-300 1034.2 770 69.4
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 1.6e-299 1032.7 819 66.1
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 2.1e-299 1032.3 818 66.6
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 2.2e-296 1022.3 824 65.8
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 4.1e-295 1018.1 819 67.6
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 7.0e-295 1017.3 783 69.0
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 8.6e-293 1010.4 824 66.1
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.1e-292 1010.0 817 66.2
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 9.5e-292 1006.9 817 66.2
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 9.5e-292 1006.9 817 64.9
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 2.1e-291 1005.7 817 66.0
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 1.4e-290 1003.0 820 66.1
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 4.0e-290 1001.5 820 65.1
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 5.2e-290 1001.1 837 64.2
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 8.9e-290 1000.3 819 64.2
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 1.5e-289 999.6 819 66.1
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 2.0e-289 999.2 817 65.7
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 2.6e-289 998.8 820 65.7
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 3.4e-289 998.4 785 66.4
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 4.4e-289 998.0 791 66.5
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 1.1e-287 993.4 788 65.7
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 3.5e-286 988.4 819 64.2
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 4.6e-286 988.0 866 62.5
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 6.2e-283 977.6 821 63.3
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 5.2e-282 974.5 819 63.7
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 2.0e-281 972.6 820 63.0
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 7.5e-281 970.7 780 64.5
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 1.1e-279 966.8 820 63.0
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 2.4e-279 965.7 784 66.6
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 3.2e-279 965.3 792 63.3
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 2.1e-278 962.6 788 65.0
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 6.6e-277 957.6 820 64.0
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 1.2e-275 953.4 820 61.8
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 4.7e-275 951.4 787 63.5
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 6.2e-275 951.0 819 61.3
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 6.2e-275 951.0 787 64.3
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 2.3e-274 949.1 829 61.9
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 2.0e-273 946.0 825 61.2
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 2.6e-273 945.7 789 63.8
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 3.7e-272 941.8 789 63.5
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 2.4e-271 939.1 794 65.4
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 2.4e-271 939.1 828 62.3
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 4.1e-271 938.3 788 62.6
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 5.4e-271 937.9 826 61.0
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 2.1e-270 936.0 820 62.6
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 2.1e-270 936.0 787 62.9
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 6.0e-270 934.5 828 62.4
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 7.8e-270 934.1 794 65.2
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 7.8e-270 934.1 824 62.7
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 3.0e-269 932.2 824 61.2
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 1.9e-268 929.5 797 61.0
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 7.3e-268 927.5 826 62.8
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 9.5e-268 927.2 789 63.4
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 3.6e-267 925.2 822 60.5
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 1.4e-266 923.3 787 60.9
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 2.0e-265 919.5 787 61.9
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 1.3e-264 916.8 826 62.6
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 5.4e-263 911.4 789 61.9
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 5.4e-263 911.4 790 59.6
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 7.1e-263 911.0 780 62.9
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 9.2e-263 910.6 789 61.5
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 2.1e-262 909.4 790 62.3
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 2.7e-262 909.1 741 65.3
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 4.3e-260 901.7 766 63.1
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 5.6e-260 901.4 781 61.7
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 7.3e-260 901.0 790 60.4
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 1.6e-259 899.8 796 62.3
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 4.4e-257 891.7 801 59.9
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 3.8e-256 888.6 819 60.1
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 4.9e-256 888.3 819 60.4
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 4.2e-255 885.2 819 60.1
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 1.2e-254 883.6 820 59.9
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 6.6e-253 877.9 788 60.0
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 1.5e-252 876.7 821 60.4
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 4.3e-252 875.2 800 61.4
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 7.3e-252 874.4 819 59.8
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 1.6e-251 873.2 819 59.7
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 2.1e-251 872.8 820 60.2
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 9.0e-250 867.5 821 58.8
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 1.3e-248 863.6 775 59.6
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 2.9e-248 862.4 785 60.6
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 1.1e-247 860.5 824 60.2
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 7.1e-247 857.8 824 60.4
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 7.1e-247 857.8 824 60.4
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 7.1e-247 857.8 824 60.4
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 2.1e-246 856.3 824 60.1
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 4.6e-246 855.1 794 59.1
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 1.5e-244 850.1 790 59.6
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 1.0e-232 810.8 795 55.1
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 1.5e-225 786.9 790 55.4
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 7.7e-225 784.6 830 53.3
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 1.1e-218 764.2 624 67.6
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 3.7e-211 739.2 791 54.6
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 7.5e-196 688.3 641 57.7
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.7e-195 687.2 641 57.7
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 3.0e-189 666.4 644 57.8
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 3.6e-182 642.9 463 70.8
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 1.8e-173 614.0 462 71.9
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 7.5e-172 608.6 849 45.0
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 7.3e-167 592.0 489 63.8
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 1.2e-164 584.7 466 66.5
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 1.2e-164 584.7 496 66.5
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 4.9e-163 579.3 465 65.4
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 2.4e-162 577.0 557 55.5
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 1.2e-161 574.7 465 65.8
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 5.6e-159 565.8 464 65.9
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 6.2e-158 562.4 458 66.2
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 7.1e-154 548.9 458 64.2
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 9.2e-154 548.5 462 62.3
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 9.2e-154 548.5 462 62.3
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 2.3e-152 543.9 451 62.3
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 2.4e-146 523.9 460 62.0
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 3.5e-145 520.0 460 60.4
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 4.6e-145 519.6 454 61.0
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 2.3e-144 517.3 461 61.0
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 6.6e-144 515.8 461 60.1
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 8.1e-142 508.8 462 61.9
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 7.1e-138 495.7 458 59.8
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 9.3e-138 495.4 412 62.1
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 2.1e-137 494.2 456 58.8
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 2.1e-137 494.2 735 41.9
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 4.6e-137 493.0 459 59.9
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 2.3e-136 490.7 498 53.4
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 3.3e-135 486.9 713 43.3
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 1.4e-133 481.5 453 57.0
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 3.1e-133 480.3 453 57.0
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 4.0e-133 479.9 467 57.8
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 3.4e-132 476.9 453 56.7
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 3.0e-128 463.8 690 42.9
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 6.2e-126 456.1 454 57.3
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 1.9e-122 444.5 752 38.7
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 3.2e-122 443.7 748 38.9
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 3.7e-118 430.3 456 54.6
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.5e-108 398.3 299 69.9
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 6.9e-101 372.9 312 64.4
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 2.8e-94 350.9 454 43.8
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 4.5e-92 343.6 399 51.6
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 1.5e-90 338.6 265 68.7
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 5.2e-80 303.5 197 80.7
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 6.8e-80 303.1 219 74.0
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 4.4e-63 247.3 360 40.0
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 8.6e-59 233.0 750 28.4
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 6.4e-54 216.9 144 77.8
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 6.4e-54 216.9 144 77.8
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 2.3e-51 208.4 442 33.5
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 2.3e-48 198.4 147 62.6
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 7.5e-47 193.4 356 37.4
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 3.5e-44 184.5 129 71.3
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 3.9e-43 181.0 136 63.2
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 2.4e-29 135.2 90 68.9
Nn3g18530 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.2e-20 106.3 155 40.6
Nn3g18532 Nelumbo nucifera HOM05D004452 ORTHO05D005358 4.6e-20 104.4 155 40.0
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 6.7e-19 100.5 87 66.7
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 6.9e-16 90.5 70 58.6
TAR625G1460 Trochodendron aralioides HOM05D004452 ORTHO05D005358 6.9e-16 90.5 96 45.8
PRCOL_00004305 Prasinoderma coloniale HOM05D004452 ORTHO05D005358 3.3e-10 71.6 229 26.6
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 4.3e-10 71.2 54 59.3
Cfa027148 Carpinus fangiana HOM05D004452 ORTHO05D124743 5.8e-07 60.8 185 29.7


User provided reference genes

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