Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 0.0e+00 2283.1 1166 100.0
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 1.6e-311 1073.2 1185 53.9
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 2.7e-310 1068.9 1218 52.5
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 9.6e-308 1060.4 1214 52.5
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 2.1e-302 1042.7 1208 51.8
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 1.4e-287 993.4 1223 49.7
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 7.2e-287 991.1 1212 50.3
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 5.0e-280 968.4 1210 49.1
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 1.6e-273 946.8 1231 48.5
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 2.0e-273 946.4 1198 48.3
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 2.2e-272 943.0 1198 48.2
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 8.0e-270 934.5 1203 48.0
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 2.7e-265 919.5 1207 47.6
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 3.6e-262 909.1 1234 46.7
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 1.3e-256 890.6 1220 45.7
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.7e-256 890.2 1229 46.8
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 5.5e-255 885.2 1219 45.6
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 1.2e-254 884.0 1210 45.9
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 1.0e-253 880.9 1208 45.7
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 3.1e-250 869.4 1207 46.4
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 2.3e-248 863.2 1216 44.6
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 2.5e-247 859.8 1222 45.3
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 4.4e-244 849.0 1190 45.2
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 2.2e-243 846.7 1182 43.9
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 2.4e-242 843.2 1175 45.4
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 4.1e-242 842.4 1224 44.4
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 2.7e-241 839.7 1203 44.2
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 6.0e-241 838.6 1227 44.7
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 6.0e-241 838.6 1294 43.4
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 8.6e-240 834.7 1197 44.5
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 1.1e-234 817.8 1194 45.1
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 4.1e-234 815.8 1208 44.5
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 8.6e-232 808.1 1210 44.0
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.6e-230 803.9 1203 43.3
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 2.8e-230 803.1 1235 43.2
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 1.4e-229 800.8 1197 44.1
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 3.1e-229 799.7 1220 43.2
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.4e-226 790.8 1245 42.5
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 4.1e-226 789.3 1207 44.2
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 7.1e-226 788.5 1252 42.8
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 3.5e-225 786.2 1219 43.3
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 3.0e-224 783.1 1258 41.3
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 1.5e-223 780.8 1254 41.9
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.5e-220 770.8 1190 43.9
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 1.3e-219 767.7 1188 44.5
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 4.2e-218 762.7 1174 43.4
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.2e-217 761.1 1188 44.2
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 1.6e-217 760.8 1194 43.0
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 7.3e-215 751.9 1209 41.9
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 1.6e-214 750.7 1223 42.7
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 4.8e-206 722.6 1255 40.5
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 1.2e-204 718.0 1214 41.2
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 1.1e-202 711.4 1257 39.9
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 4.6e-201 706.1 1138 42.2
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 1.1e-199 701.4 1129 41.5
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 9.0e-197 691.8 1203 40.4
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 4.2e-194 682.9 1133 41.4
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 1.3e-187 661.4 1174 39.9
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 3.2e-186 656.8 1265 39.1
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 3.6e-177 626.7 1163 39.0
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 3.0e-176 623.6 1250 36.2
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 1.5e-175 621.3 795 47.4
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 3.1e-173 613.6 1138 39.5
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 2.6e-172 610.5 1191 38.7
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 8.8e-168 595.5 998 39.8
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 1.3e-166 591.7 1183 34.7
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 1.1e-157 562.0 1187 36.4
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 2.4e-157 560.8 1179 36.0
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 7.0e-157 559.3 801 41.4
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 5.0e-155 553.1 1201 36.5
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 1.5e-151 541.6 1185 35.8
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 1.5e-151 541.6 1145 36.9
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 1.7e-150 538.1 1178 34.9
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 1.7e-150 538.1 1108 34.2
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 1.2e-148 531.9 1191 34.4
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 1.6e-148 531.6 1176 35.2
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 1.7e-147 528.1 1176 35.0
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 6.5e-147 526.2 1191 34.5
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 9.4e-146 522.3 1174 34.5
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 1.0e-144 518.8 1198 36.1
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 3.0e-144 517.3 1176 34.4
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 2.6e-143 514.2 659 45.7
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 3.7e-142 510.4 1188 35.2
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 2.3e-131 474.6 1180 34.1
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 1.1e-125 455.7 674 44.5
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 1.3e-123 448.7 1127 32.2
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 8.6e-115 419.5 976 36.1
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 9.5e-114 416.0 1179 30.9
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 1.0e-107 396.0 622 40.4
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 1.2e-105 389.0 1296 30.0
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 3.9e-99 367.5 486 50.4
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 7.3e-90 336.7 720 35.0
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 2.0e-79 302.0 1100 27.3
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.7e-78 298.9 530 38.1
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 2.5e-77 295.0 712 33.7
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 3.4e-71 274.6 1464 26.4
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 1.7e-62 245.7 162 71.0
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 7.7e-55 220.3 1392 26.2
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 1.9e-45 189.1 180 55.0
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 9.4e-45 186.8 105 81.9
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 8.5e-38 163.7 211 46.4
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 2.5e-37 162.2 269 38.7
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 7.2e-37 160.6 196 44.4
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 1.0e-35 156.8 170 50.0
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 6.3e-33 147.5 140 48.6
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 1.8e-32 146.0 775 27.5
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 1.7e-30 139.4 150 45.3
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 9.4e-29 133.7 283 32.9
Psat0ss2518g0200 Pisum sativum HOM05D001879 ORTHO05D007648 2.9e-22 112.1 204 34.8
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 2.1e-20 105.9 86 54.7
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 8.0e-20 104.0 86 54.7
Psat5g005800 Pisum sativum HOM05D001879 ORTHO05D007648 6.4e-17 94.4 103 42.7
Psat5g005720 Pisum sativum HOM05D001879 ORTHO05D007648 7.8e-15 87.4 189 32.3
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.9e-13 82.8 54 70.4
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 1.6e-12 79.7 305 26.6
Psat1g176640 Pisum sativum HOM05D001879 ORTHO05D007648 2.1e-12 79.3 69 49.3
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 2.8e-12 79.0 176 33.5
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 2.8e-12 79.0 144 31.9
Psat4g136520 Pisum sativum HOM05D001879 ORTHO05D007648 8.9e-11 73.9 58 51.7
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 2.0e-10 72.8 154 33.8
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 2.0e-10 72.8 77 45.5
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 1.3e-09 70.1 77 42.9
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 3.7e-09 68.6 56 50.0
Lalb_Chr22g0355591 Lupinus albus HOM05D001879 ORTHO05D007648 1.1e-08 67.0 193 32.1
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 5.4e-08 64.7 260 27.7
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 7.0e-08 64.3 154 31.8
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 7.0e-08 64.3 51 51.0
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 3.5e-07 62.0 74 41.9
Glyma.11G126400 Glycine max HOM05D002300 ORTHO05D002340 8.6e-06 57.4 311 22.8


User provided reference genes

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