Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 9.2e-306 1052.7 536 100.0
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 2.5e-234 815.5 477 82.4
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 2.3e-232 808.9 476 84.7
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 8.8e-232 807.0 522 77.8
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 2.0e-231 805.8 490 81.4
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 9.8e-231 803.5 521 78.7
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 9.8e-231 803.5 504 79.8
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 9.8e-231 803.5 511 79.3
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 3.7e-230 801.6 503 79.5
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 4.8e-230 801.2 462 85.1
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 4.8e-230 801.2 530 77.7
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 4.8e-230 801.2 463 84.2
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 8.3e-230 800.4 469 82.3
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.1e-229 800.0 524 76.7
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 1.1e-229 800.0 469 82.5
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 3.1e-229 798.5 494 79.8
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 5.4e-229 797.7 535 76.3
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 5.4e-229 797.7 473 82.2
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 5.4e-229 797.7 536 75.7
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 5.4e-229 797.7 496 78.6
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 7.0e-229 797.3 484 81.6
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 9.1e-229 797.0 521 77.2
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 1.2e-228 796.6 520 77.1
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 2.0e-228 795.8 520 77.1
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 2.7e-228 795.4 533 76.2
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 2.7e-228 795.4 460 83.7
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 4.5e-228 794.7 534 75.7
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 7.7e-228 793.9 524 76.9
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 1.3e-227 793.1 524 77.3
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.7e-227 792.7 524 76.7
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 1.7e-227 792.7 462 82.5
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 2.2e-227 792.3 507 77.9
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 2.9e-227 792.0 514 76.8
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 6.5e-227 790.8 475 80.6
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 8.5e-227 790.4 463 82.7
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 1.5e-226 789.6 524 76.5
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.5e-226 789.6 485 80.8
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 1.9e-226 789.3 472 82.2
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 4.2e-226 788.1 486 80.5
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 5.5e-226 787.7 470 81.1
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 5.5e-226 787.7 534 75.8
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 5.5e-226 787.7 515 77.1
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 9.4e-226 786.9 486 78.2
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 9.4e-226 786.9 535 75.0
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 1.2e-225 786.6 483 80.5
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 1.2e-225 786.6 464 81.9
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 2.7e-225 785.4 502 77.9
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 3.6e-225 785.0 468 81.0
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 4.7e-225 784.6 463 81.6
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 4.7e-225 784.6 466 80.9
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 4.7e-225 784.6 465 80.9
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 6.1e-225 784.3 477 79.0
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 1.0e-224 783.5 515 75.7
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 1.0e-224 783.5 463 82.1
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 1.4e-224 783.1 463 83.2
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.4e-224 783.1 534 75.8
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 1.8e-224 782.7 514 76.3
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 4.0e-224 781.6 490 79.6
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 5.2e-224 781.2 483 79.7
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 5.2e-224 781.2 474 79.7
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 6.8e-224 780.8 459 81.7
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.5e-223 779.6 566 72.4
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 3.4e-223 778.5 461 82.0
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 3.4e-223 778.5 507 77.9
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 3.4e-223 778.5 526 73.8
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 4.4e-223 778.1 523 74.4
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 5.7e-223 777.7 468 80.3
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 5.7e-223 777.7 522 74.9
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 1.3e-222 776.5 525 75.0
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 2.8e-222 775.4 525 75.6
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 3.7e-222 775.0 516 74.0
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.7e-222 775.0 554 73.5
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 8.3e-222 773.9 566 71.9
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 3.8e-219 765.0 461 80.3
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 5.0e-219 764.6 523 74.6
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 5.0e-219 764.6 477 78.2
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 6.6e-219 764.2 461 80.3
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 8.6e-219 763.8 531 74.2
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.5e-218 763.1 472 78.0
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 5.6e-218 761.1 501 75.0
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 1.2e-217 760.0 504 76.0
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 8.0e-217 757.3 520 74.2
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 1.4e-216 756.5 465 78.1
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 1.8e-216 756.1 498 74.7
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 5.2e-216 754.6 523 72.5
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 8.9e-216 753.8 495 74.5
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 1.2e-215 753.4 462 79.4
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 4.4e-215 751.5 517 73.5
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 5.7e-215 751.1 513 73.3
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 7.5e-215 750.7 514 73.5
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 9.8e-215 750.4 498 74.3
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 4.9e-214 748.0 498 74.1
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 6.4e-214 747.7 498 74.3
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 8.3e-214 747.3 461 78.5
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 1.8e-213 746.1 512 73.4
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 3.2e-213 745.3 465 78.9
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 7.8e-212 740.7 531 70.6
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 6.6e-211 737.6 510 72.5
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 2.3e-208 729.2 514 73.5
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 3.1e-208 728.8 532 69.9
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 5.4e-205 718.0 507 70.8
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 3.5e-204 715.3 470 72.1
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 3.3e-202 708.8 514 67.5
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 9.5e-202 707.2 521 70.6
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 6.2e-201 704.5 467 73.9
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 5.2e-200 701.4 408 83.3
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 8.9e-200 700.7 493 69.0
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.3e-198 696.8 414 79.7
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 4.9e-198 694.9 515 67.2
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.4e-197 693.3 461 73.5
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 1.7e-195 686.4 497 67.4
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 2.5e-194 682.6 464 73.5
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 9.9e-191 670.6 384 86.5
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 4.9e-190 668.3 474 73.2
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.2e-188 663.7 442 77.4
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 3.5e-188 662.1 430 74.9
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 2.3e-187 659.4 453 69.1
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 5.1e-187 658.3 374 84.2
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 6.6e-187 657.9 374 84.5
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 3.3e-186 655.6 454 74.9
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 4.6e-180 635.2 506 65.0
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 1.5e-178 630.2 516 65.9
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 1.5e-178 630.2 730 48.9
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 2.0e-175 619.8 389 79.9
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 4.3e-170 602.1 479 65.8
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 9.6e-170 600.9 464 67.2
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 9.0e-168 594.3 506 62.1
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 1.9e-157 560.1 357 78.4
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.2e-151 540.8 427 67.4
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 2.0e-119 433.7 358 65.6
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 4.4e-114 416.0 237 84.8
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 4.1e-112 409.5 313 69.6
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 3.5e-103 379.8 292 65.1
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 2.0e-95 354.0 251 72.5
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 4.6e-95 352.8 459 41.0
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 1.2e-90 338.2 490 39.2
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.3e-89 334.7 201 80.6
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 3.2e-88 330.1 460 38.7
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 1.8e-75 287.7 227 63.9
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 8.4e-65 252.3 384 42.2
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 8.7e-62 242.3 131 89.3
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 3.8e-57 226.9 171 64.9
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 9.3e-56 222.2 197 64.5
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 3.9e-54 216.9 196 59.2
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 2.5e-53 214.2 165 67.3
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 3.7e-44 183.7 98 89.8
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 5.3e-43 179.9 249 42.6
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 5.3e-43 179.9 373 30.8
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 5.3e-43 179.9 123 62.6
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 1.2e-42 178.7 131 61.8
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 5.5e-40 169.9 123 66.7
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 1.3e-38 165.2 91 86.8
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 4.5e-34 150.2 124 58.1
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 7.2e-32 142.9 80 82.5
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 1.6e-31 141.7 93 80.6
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 4.6e-31 140.2 290 31.0
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 6.9e-27 126.3 74 79.7
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 6.9e-27 126.3 100 65.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 9.1e-27 125.9 100 64.0
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 5.2e-14 83.6 56 64.3
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 2.2e-12 78.2 75 53.3
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 3.1e-11 74.3 47 70.2
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 3.1e-11 74.3 41 78.0
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 2.7e-07 61.2 35 77.1
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 3.6e-07 60.8 104 42.3
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 5.2e-06 57.0 38 71.1
SMO197G0092 Selaginella moellendorffii HOM05D003197 ORTHO05D003769 5.2e-06 57.0 218 27.1
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 6.7e-06 56.6 34 73.5


User provided reference genes

Program Settings