Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 0.0e+00 1259.2 730 100.0
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 9.4e-285 983.4 737 79.9
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 1.0e-259 900.2 746 74.1
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 1.7e-257 892.9 751 73.4
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 1.1e-256 890.2 749 73.3
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 3.5e-255 885.2 749 74.0
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.2e-252 876.7 748 74.3
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.2e-252 876.7 748 74.3
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 4.7e-252 874.8 749 72.2
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 6.8e-251 870.9 739 72.5
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 1.2e-250 870.2 755 72.1
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 5.7e-250 867.8 749 73.3
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 1.3e-249 866.7 747 71.6
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 8.3e-249 864.0 749 72.1
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 1.8e-248 862.8 637 70.5
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 4.1e-248 861.7 650 66.9
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 7.0e-248 860.9 756 72.1
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 2.7e-247 859.0 746 72.1
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 9.5e-245 850.5 781 68.0
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 1.8e-243 846.3 747 71.9
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 2.3e-243 845.9 775 67.9
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 4.0e-243 845.1 742 72.2
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 5.2e-243 844.7 757 69.2
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 5.2e-243 844.7 763 69.9
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 6.8e-243 844.3 639 66.8
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 1.2e-242 843.6 744 71.8
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.2e-242 843.6 750 71.9
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 3.4e-242 842.0 742 71.8
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 1.7e-241 839.7 739 71.7
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 3.7e-241 838.6 753 70.9
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 8.3e-241 837.4 787 58.4
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 1.1e-240 837.0 749 70.4
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 2.4e-240 835.9 753 70.8
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 7.0e-240 834.3 753 70.4
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.2e-239 833.6 753 70.5
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 1.2e-239 833.6 756 70.9
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 4.6e-239 831.6 743 71.2
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 5.9e-239 831.2 742 71.0
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 1.3e-238 830.1 773 69.5
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 3.9e-238 828.6 823 66.7
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 5.0e-238 828.2 754 70.3
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 1.9e-237 826.2 751 70.8
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 3.3e-237 825.5 748 71.4
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 9.5e-237 823.9 749 71.6
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 8.0e-236 820.8 744 70.0
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 3.1e-235 818.9 761 68.6
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 3.1e-235 818.9 638 68.8
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 1.2e-234 817.0 748 70.1
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 1.5e-234 816.6 747 69.9
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 2.6e-234 815.8 753 69.9
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 5.8e-234 814.7 778 68.1
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 5.8e-234 814.7 748 69.9
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 3.7e-233 812.0 742 68.7
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 4.9e-233 811.6 767 67.7
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 6.4e-233 811.2 763 67.9
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 3.2e-232 808.9 750 68.9
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 1.7e-230 803.1 763 67.4
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 3.0e-230 802.4 748 70.1
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.0e-230 802.4 746 69.2
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.0e-230 802.4 746 69.2
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 6.6e-230 801.2 747 69.2
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 8.6e-230 800.8 742 68.7
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.9e-229 799.7 747 69.1
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 4.3e-229 798.5 790 65.7
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 4.7e-228 795.0 775 65.4
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 8.1e-228 794.3 755 66.9
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 1.4e-227 793.5 747 68.3
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 8.9e-227 790.8 844 60.9
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 2.6e-226 789.3 793 57.5
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 3.4e-226 788.9 768 59.2
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 9.9e-226 787.3 758 66.1
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 3.7e-225 785.4 751 66.6
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 3.7e-225 785.4 768 64.8
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 2.1e-220 769.6 742 66.4
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 6.2e-220 768.1 742 67.7
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 1.4e-219 766.9 745 66.8
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 1.8e-219 766.5 738 67.3
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 4.4e-218 761.9 683 70.0
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 5.8e-218 761.5 740 65.3
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 9.9e-218 760.8 742 65.2
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 3.2e-216 755.7 742 66.0
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 9.2e-216 754.2 779 62.9
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 1.6e-215 753.4 740 65.3
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 2.7e-215 752.7 740 65.9
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 3.5e-215 752.3 743 65.7
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 1.0e-214 750.7 736 64.3
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 3.9e-214 748.8 750 66.8
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 1.1e-213 747.3 740 64.1
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 1.5e-213 746.9 750 66.7
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 1.5e-213 746.9 738 64.9
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 6.2e-212 741.5 742 64.8
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.4e-211 740.3 745 65.0
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 4.4e-210 735.3 735 64.2
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 4.9e-209 731.9 756 61.8
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 1.4e-208 730.3 738 64.0
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 3.2e-208 729.2 837 61.2
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 1.2e-207 727.2 743 62.6
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 4.2e-200 702.2 738 62.9
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 3.5e-199 699.1 743 63.8
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 1.5e-194 683.7 776 59.5
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 2.2e-193 679.9 800 60.4
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 2.9e-193 679.5 601 59.4
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 9.3e-192 674.5 744 61.3
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 2.4e-187 659.8 783 60.0
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 6.5e-185 651.7 721 61.3
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.2e-178 630.9 547 75.0
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 2.0e-178 630.2 743 54.6
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 4.1e-171 605.9 563 60.7
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 7.2e-168 595.1 764 55.4
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 2.1e-167 593.6 538 61.3
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 1.7e-156 557.4 657 48.7
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 1.6e-154 550.8 451 63.6
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 3.8e-153 546.2 746 56.3
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 1.2e-151 541.2 758 56.6
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 4.8e-148 529.3 760 55.4
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 1.5e-141 507.7 537 51.8
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 2.0e-141 507.3 649 48.1
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 7.2e-136 488.8 439 58.5
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 1.1e-120 438.3 645 43.6
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 6.4e-108 396.0 378 56.1
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 2.1e-98 364.4 361 75.6
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.5e-96 357.5 388 72.4
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 4.3e-96 356.7 377 54.9
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 2.1e-95 354.4 363 73.8
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 1.3e-87 328.6 304 83.6
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 1.2e-77 295.4 332 52.1
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 1.3e-71 275.4 750 33.5
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 3.1e-70 270.8 190 65.8
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.8e-69 266.5 310 49.7
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 2.5e-67 261.2 484 37.2
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 9.3e-67 259.2 744 31.7
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-62 245.7 162 72.8
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 7.9e-58 229.6 707 30.6
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 3.9e-57 227.3 146 77.4
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 1.3e-52 212.2 478 33.5
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.1e-46 190.7 225 46.7
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.5e-40 172.2 225 46.2
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.2e-39 166.4 98 80.6
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.9e-36 157.9 225 43.1
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 8.5e-36 156.4 146 56.8
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.5e-35 155.6 90 81.1
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 1.5e-32 145.6 110 65.5
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.0e-32 145.2 88 79.5
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.4e-30 139.0 84 79.8
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.1e-30 137.9 83 78.3
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 5.3e-30 137.1 184 45.7
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 2.2e-28 131.7 132 54.5
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.7e-26 124.0 67 80.6
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 8.8e-25 119.8 76 73.7
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.4e-24 117.5 107 59.8
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 6.3e-23 113.6 93 63.4
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.3e-23 113.6 70 75.7
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.0e-22 110.2 61 82.0
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.6e-21 109.0 61 80.3
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-19 102.8 60 80.0
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 5.2e-17 94.0 155 89.0
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 1.5e-16 92.4 154 88.3
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 4.9e-15 87.4 200 33.5
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 4.9e-15 87.4 116 46.6
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.1e-14 86.3 157 39.5
Gohir.A05G415601 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.8e-13 80.1 85 48.2
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 5.0e-12 77.4 116 46.6
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 4.7e-10 70.9 36 94.4
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 1.0e-09 69.7 194 29.4
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.4e-09 69.3 35 94.3
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 1.8e-09 68.9 36 91.7
BcaB05g22258 Brassica carinata HOM05D004098 ORTHO05D021823 3.1e-09 68.2 36 88.9
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.8e-09 67.0 60 60.0
Gohir.1Z049608 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-08 66.2 58 48.3
Gohir.1Z049433 Gossypium hirsutum HOM05D004098 ORTHO05D021823 1.5e-08 65.9 36 88.9
Lsat_1_v5_gn_9_105500 Lactuca sativa HOM05D004098 ORTHO05D001482 1.5e-08 65.9 91 42.9
SEGI_28507 Sequoiadendron giganteum HOM05D004098 ORTHO05D021823 4.4e-08 64.3 36 83.3
C02p15380 Brassica napus HOM05D004098 ORTHO05D005215 5.8e-08 63.9 139 38.8
Hma1.2p1_1190F.1_g265410 Hydrangea macrophylla HOM05D001237 ORTHO05D001827 1.3e-07 62.8 52 57.7
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 1.7e-07 62.4 41 70.7
Lsat_1_v5_gn_3_135720 Lactuca sativa HOM05D004098 ORTHO05D005215 1.9e-06 58.9 34 76.5
Gohir.A11G265400 Gossypium hirsutum HOM05D000055 ORTHO05D013390 7.0e-06 57.0 40 65.0


User provided reference genes

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