Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 1.3e-161 573.2 327 100.0
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 2.2e-108 396.4 322 70.5
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 3.9e-105 385.6 298 70.5
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 3.9e-105 385.6 302 72.8
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 5.1e-105 385.2 301 68.1
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 4.3e-104 382.1 310 71.3
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 4.3e-104 382.1 300 67.7
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 6.2e-103 378.3 306 70.9
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 8.1e-103 377.9 302 69.9
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 2.3e-102 376.3 304 67.4
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 3.1e-102 375.9 323 65.9
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 4.0e-102 375.6 315 68.6
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 4.0e-102 375.6 324 63.3
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 5.2e-102 375.2 278 70.5
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 6.8e-102 374.8 325 64.9
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 9.9e-101 370.9 297 67.3
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 9.9e-101 370.9 286 74.5
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 1.3e-100 370.5 328 63.1
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 2.9e-100 369.4 318 67.6
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 4.9e-100 368.6 300 69.0
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 4.9e-100 368.6 301 70.8
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 6.4e-100 368.2 307 67.1
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 8.3e-100 367.9 287 67.9
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 8.3e-100 367.9 312 67.6
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.4e-99 367.1 303 65.0
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 1.4e-99 367.1 312 68.3
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 2.4e-99 366.3 323 69.3
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 7.1e-99 364.8 321 66.7
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 9.2e-99 364.4 308 67.9
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 7.8e-98 361.3 312 66.7
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 1.7e-97 360.1 306 69.3
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 6.6e-97 358.2 298 66.1
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 8.6e-97 357.8 325 67.7
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 1.1e-96 357.5 305 66.6
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 1.5e-96 357.1 323 67.5
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 2.5e-96 356.3 298 65.8
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 5.6e-96 355.1 299 68.2
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 7.3e-96 354.8 264 69.7
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 7.3e-96 354.8 304 65.8
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 7.3e-96 354.8 326 61.0
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 1.2e-95 354.0 293 66.2
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 6.2e-95 351.7 300 64.7
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 4.0e-94 349.0 283 67.8
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 5.2e-94 348.6 267 70.4
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 5.2e-94 348.6 291 65.3
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 1.2e-93 347.4 299 61.5
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 1.2e-93 347.4 283 67.5
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 5.8e-93 345.1 345 62.6
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 2.2e-92 343.2 304 62.8
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 2.9e-92 342.8 325 64.9
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 4.9e-92 342.0 287 66.9
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 6.4e-92 341.7 316 62.0
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 1.9e-91 340.1 246 70.3
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 3.2e-91 339.3 304 65.5
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 5.4e-91 338.6 326 61.0
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.6e-90 337.0 270 71.5
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 6.6e-89 331.6 255 67.1
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 4.3e-88 328.9 218 77.1
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 7.3e-88 328.2 272 68.0
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 9.6e-88 327.8 298 66.4
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 1.3e-87 327.4 221 75.6
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 1.3e-87 327.4 298 63.1
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 2.8e-87 326.2 244 68.0
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 1.4e-86 323.9 252 65.9
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 2.4e-86 323.2 303 59.7
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 9.0e-86 321.2 280 67.9
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 2.6e-85 319.7 289 60.9
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 7.6e-85 318.2 301 64.5
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 1.7e-84 317.0 308 64.3
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.7e-84 317.0 308 64.3
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 2.2e-84 316.6 334 59.9
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 2.2e-84 316.6 312 62.5
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 3.8e-84 315.8 322 62.1
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 1.1e-83 314.3 296 65.9
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 1.4e-83 313.9 249 66.3
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.4e-83 313.2 308 64.3
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 3.2e-83 312.8 323 61.3
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 5.4e-83 312.0 361 54.0
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 7.1e-83 311.6 302 58.6
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 1.6e-82 310.5 302 58.6
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 1.6e-82 310.5 248 65.3
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 1.6e-82 310.5 300 63.3
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 2.1e-82 310.1 301 58.1
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 6.0e-82 308.5 302 62.6
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 1.3e-81 307.4 333 60.1
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 3.9e-81 305.8 333 59.8
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 1.9e-80 303.5 312 59.9
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 2.5e-80 303.1 303 63.0
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 2.5e-80 303.1 290 62.1
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 3.3e-80 302.8 287 62.7
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 4.3e-80 302.4 303 63.0
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 5.6e-80 302.0 303 62.7
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 7.3e-80 301.6 334 59.3
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 9.6e-80 301.2 303 62.4
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 9.6e-80 301.2 303 62.4
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 2.8e-79 299.7 239 69.0
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 2.8e-79 299.7 288 62.2
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 3.6e-79 299.3 235 69.4
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 2.4e-78 296.6 247 64.4
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.2e-77 294.3 309 57.0
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 5.4e-75 285.4 233 62.7
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 1.2e-74 284.3 298 56.0
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 4.6e-74 282.3 325 56.9
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 4.6e-74 282.3 219 66.7
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 7.9e-74 281.6 301 60.1
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 1.4e-70 270.8 234 60.3
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 3.4e-69 266.2 180 73.3
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 2.2e-68 263.5 194 66.5
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 8.7e-65 251.5 274 51.1
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 7.4e-64 248.4 322 54.7
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 2.8e-63 246.5 272 54.0
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 2.2e-60 236.9 139 82.0
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 1.9e-56 223.8 283 51.6
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 2.6e-53 213.4 297 42.4
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 6.5e-52 208.8 225 49.8
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 3.2e-51 206.5 314 49.7
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 9.7e-48 194.9 266 48.1
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 6.9e-46 188.7 117 78.6
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 1.1e-43 181.4 121 69.4
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 9.1e-38 161.8 177 47.5
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 4.5e-37 159.5 152 57.9
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 2.2e-36 157.1 95 78.9
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 2.2e-36 157.1 97 77.3
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 1.5e-32 144.4 236 39.0
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 5.3e-30 136.0 242 36.4
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 4.0e-25 119.8 70 80.0
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-23 113.6 225 29.8
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 2.8e-23 113.6 197 34.0
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 2.0e-21 107.5 149 54.4
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 6.1e-18 95.9 104 50.0
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 1.4e-14 84.7 119 42.9
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 5.9e-13 79.3 236 31.4
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 7.2e-11 72.4 69 56.5
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 9.5e-11 72.0 199 28.1
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 2.1e-10 70.9 53 71.7
PRCOL_00005492 Prasinoderma coloniale HOM05D005493 ORTHO05D333432 2.2e-07 60.8 188 25.0
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 1.4e-06 58.2 98 29.6


User provided reference genes

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