Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E03029 Eucalyptus grandis HOM05D000964 ORTHO05D003870 4.2e-40 167.5 83 100.0
CSS0011604 Camellia sinensis var. sinensis HOM05D000964 ORTHO05D003870 3.1e-11 71.6 59 59.3
Migut.D01435 Erythranthe guttata HOM05D000964 ORTHO05D003870 5.4e-11 70.9 50 74.0
PGR111G0041 Punica granatum HOM05D000964 ORTHO05D003870 5.4e-11 70.9 50 78.0
Medtr4g051380 Medicago truncatula HOM05D000964 ORTHO05D004047 7.0e-11 70.5 50 76.0
unitig_91.g26511 Utricularia gibba HOM05D000964 ORTHO05D003870 7.0e-11 70.5 50 74.0
VMungo0783G0001 Vigna mungo HOM05D000964 ORTHO05D003870 7.0e-11 70.5 50 72.0
LjContig00318g0022290 Lotus japonicus HOM05D000964 ORTHO05D004047 9.1e-11 70.1 50 74.0
Medtr0002s0760 Medicago truncatula HOM05D000964 ORTHO05D004047 9.1e-11 70.1 84 50.0
ATR0306G003 Amborella trichopoda HOM05D000964 ORTHO05D003870 1.6e-10 69.3 50 72.0
arahy.Tifrunner.gnm1.ann1.8K1QWD Arachis hypogaea HOM05D000964 ORTHO05D003870 2.0e-10 68.9 50 74.0
Atru.chr4.2439 Acer truncatum HOM05D000964 ORTHO05D003870 2.7e-10 68.6 50 74.0
FvH4_c3g00200 Fragaria vesca HOM05D000964 ORTHO05D003870 2.7e-10 68.6 50 74.0
RcHm_v2.0_CPg0501901 Rosa chinensis HOM05D000964 ORTHO05D004047 2.7e-10 68.6 50 74.0
Ah.10g027350 Amaranthus hybridus HOM05D000964 ORTHO05D003870 3.5e-10 68.2 50 74.0
Ah.10g028970 Amaranthus hybridus HOM05D000964 ORTHO05D003870 3.5e-10 68.2 50 74.0
Medtr3g108030 Medicago truncatula HOM05D000964 ORTHO05D003870 3.5e-10 68.2 50 74.0
Nn1g05673 Nelumbo nucifera HOM05D000964 ORTHO05D003870 3.5e-10 68.2 50 70.0
MELO3C001187.2 Cucumis melo HOM05D000964 ORTHO05D003870 4.5e-10 67.8 50 74.0
Oeu054719.1 Olea europaea HOM05D000964 ORTHO05D003870 4.5e-10 67.8 50 70.0
AL2G20570 Arabidopsis lyrata HOM05D000964 ORTHO05D003870 5.9e-10 67.4 50 74.0
AL2G21710 Arabidopsis lyrata HOM05D000964 ORTHO05D003870 5.9e-10 67.4 50 74.0
ATCG00750 Arabidopsis thaliana HOM05D000964 ORTHO05D003870 5.9e-10 67.4 50 74.0
EL10Ac4g07916 Beta vulgaris HOM05D000964 ORTHO05D003870 5.9e-10 67.4 50 72.0
BcaNung05008 Brassica carinata HOM05D000964 ORTHO05D003870 5.9e-10 67.4 50 74.0
BNapus_Darmor_BZH_scaffold_253p00340 Brassica napus HOM05D000964 ORTHO05D003870 5.9e-10 67.4 50 74.0
C02p60160 Brassica napus HOM05D000964 ORTHO05D003870 5.9e-10 67.4 50 74.0
BolSC29t60486H Brassica oleracea HOM05D000964 ORTHO05D003870 5.9e-10 67.4 50 74.0
BolSC29t60527H Brassica oleracea HOM05D000964 ORTHO05D003870 5.9e-10 67.4 50 74.0
BolSC29t60608H Brassica oleracea HOM05D000964 ORTHO05D003870 5.9e-10 67.4 50 74.0
BolSC35t60668H Brassica oleracea HOM05D000964 ORTHO05D003870 5.9e-10 67.4 50 74.0
BolSC35t60731H Brassica oleracea HOM05D000964 ORTHO05D003870 5.9e-10 67.4 50 74.0
BolSC49t61164H Brassica oleracea HOM05D000964 ORTHO05D003870 5.9e-10 67.4 50 74.0
BraA06t25382Z Brassica rapa HOM05D000964 ORTHO05D004047 5.9e-10 67.4 50 74.0
BraSC138t45555Z Brassica rapa HOM05D000964 ORTHO05D003870 5.9e-10 67.4 50 74.0
BraSC143t45635Z Brassica rapa HOM05D000964 ORTHO05D004047 5.9e-10 67.4 50 74.0
BraSC59t46572Z Brassica rapa HOM05D000964 ORTHO05D003870 5.9e-10 67.4 50 74.0
Psat4g041080 Pisum sativum HOM05D000964 ORTHO05D003870 5.9e-10 67.4 50 72.0
Psat6g111040 Pisum sativum HOM05D000964 ORTHO05D003870 5.9e-10 67.4 50 72.0
arahy.Tifrunner.gnm1.ann1.918II3 Arachis hypogaea HOM05D000964 ORTHO05D004047 7.7e-10 67.0 50 72.0
arahy.Tifrunner.gnm1.ann1.PR6ML0 Arachis hypogaea HOM05D000964 ORTHO05D003870 7.7e-10 67.0 50 72.0
arahy.Tifrunner.gnm1.ann1.U4I6QC Arachis hypogaea HOM05D000964 ORTHO05D003870 7.7e-10 67.0 50 72.0
Phvul.001G047500 Phaseolus vulgaris HOM05D000964 ORTHO05D003870 7.7e-10 67.0 50 70.0
arahy.Tifrunner.gnm1.ann1.ZZ7UGR Arachis hypogaea HOM05D000964 ORTHO05D003870 1.0e-09 66.6 48 72.9
Gohir.1Z050234 Gossypium hirsutum HOM05D000964 ORTHO05D003870 1.3e-09 66.2 50 70.0
QL93p1043_0021 Quercus lobata HOM05D000964 ORTHO05D003870 1.7e-09 65.9 50 72.0
BolC7t41710H Brassica oleracea HOM05D000964 ORTHO05D003870 2.2e-09 65.5 50 72.0
Cfa021572 Carpinus fangiana HOM05D000964 ORTHO05D003870 2.2e-09 65.5 50 70.0
Sed0000218 Sechium edule HOM05D000964 ORTHO05D003870 2.2e-09 65.5 50 72.0
Sed0021757 Sechium edule HOM05D000964 ORTHO05D003870 2.2e-09 65.5 50 72.0
arahy.Tifrunner.gnm1.ann1.VJJ5XE Arachis hypogaea HOM05D000964 ORTHO05D003870 2.9e-09 65.1 49 71.4
CAN.G1595.3 Capsicum annuum HOM05D000964 ORTHO05D003870 2.9e-09 65.1 50 70.0
CAN.G327.19 Capsicum annuum HOM05D000964 ORTHO05D003870 2.9e-09 65.1 50 70.0
Migut.D01331 Erythranthe guttata HOM05D000964 ORTHO05D003870 2.9e-09 65.1 46 73.9
Migut.D01368 Erythranthe guttata HOM05D000964 ORTHO05D003870 2.9e-09 65.1 46 73.9
Gohir.A05G086300 Gossypium hirsutum HOM05D000964 ORTHO05D003870 2.9e-09 65.1 50 68.0
Gorai.004G205100 Gossypium raimondii HOM05D000964 ORTHO05D004047 2.9e-09 65.1 50 68.0
Lj2C1237T33 Lonicera japonica HOM05D000964 ORTHO05D003870 2.9e-09 65.1 50 70.0
Lju5009C0T12 Lonicera japonica HOM05D000964 ORTHO05D003870 2.9e-09 65.1 50 70.0
Nitab4.5_0004430g0030 Nicotiana tabacum HOM05D000964 ORTHO05D003870 2.9e-09 65.1 50 70.0
PSO478G2461 Papaver somniferum HOM05D000964 ORTHO05D004047 2.9e-09 65.1 50 72.0
PSO548G0016 Papaver somniferum HOM05D000964 ORTHO05D003870 2.9e-09 65.1 50 72.0
Gohir.A08G063300 Gossypium hirsutum HOM05D000964 ORTHO05D004047 3.8e-09 64.7 50 68.0
Gohir.A12G025000 Gossypium hirsutum HOM05D000964 ORTHO05D003870 3.8e-09 64.7 50 68.0
Oeu028770.1 Olea europaea HOM05D000964 ORTHO05D003870 3.8e-09 64.7 50 70.0
Psat5g206520 Pisum sativum HOM05D000964 ORTHO05D003870 3.8e-09 64.7 50 70.0
DCAR_032518 Daucus carota HOM05D000964 ORTHO05D003870 5.0e-09 64.3 50 70.0
Gohir.A05G396500 Gossypium hirsutum HOM05D000964 ORTHO05D003870 5.0e-09 64.3 50 66.0
CAN.G413.1 Capsicum annuum HOM05D000964 ORTHO05D003870 6.5e-09 63.9 50 70.0
COL.COLO4_03143 Corchorus olitorius HOM05D000964 ORTHO05D003870 6.5e-09 63.9 56 66.1
Gorai.004G150700 Gossypium raimondii HOM05D000964 ORTHO05D003870 6.5e-09 63.9 50 68.0
Nitab4.5_0027992g0010 Nicotiana tabacum HOM05D000964 ORTHO05D003870 8.5e-09 63.5 50 68.0
Oeu012813.1 Olea europaea HOM05D000964 ORTHO05D003870 8.5e-09 63.5 50 66.0
Oeu058361.1 Olea europaea HOM05D000964 ORTHO05D003870 8.5e-09 63.5 50 70.0
Gohir.D01G102112 Gossypium hirsutum HOM05D000964 ORTHO05D003870 1.1e-08 63.2 50 68.0
Sc25g0002040 Simmondsia chinensis HOM05D000964 ORTHO05D003870 1.1e-08 63.2 50 72.0
CARHR282240 Cardamine hirsuta HOM05D000964 ORTHO05D003870 1.5e-08 62.8 48 70.8
Gohir.D08G145550 Gossypium hirsutum HOM05D000964 ORTHO05D003870 1.5e-08 62.8 50 68.0
Nn002s41360 Nelumbo nucifera HOM05D000964 ORTHO05D003870 1.5e-08 62.8 49 71.4
Solyc00g500030.1 Solanum lycopersicum HOM05D000964 ORTHO05D003870 1.5e-08 62.8 50 68.0
Solyc00g500075.1 Solanum lycopersicum HOM05D000964 ORTHO05D003870 1.5e-08 62.8 50 68.0
PGSC0003DMG400015059 Solanum tuberosum HOM05D000964 ORTHO05D003870 1.5e-08 62.8 50 68.0
Lsat_1_v5_gn_5_61500 Lactuca sativa HOM05D000964 ORTHO05D003870 1.9e-08 62.4 50 70.0
Lalb_Chr25g0283361 Lupinus albus HOM05D000964 ORTHO05D003870 1.9e-08 62.4 50 68.0
Nitab4.5_0000173g0060 Nicotiana tabacum HOM05D000964 ORTHO05D003870 1.9e-08 62.4 48 68.8
Solyc00g500156.1 Solanum lycopersicum HOM05D000964 ORTHO05D003870 1.9e-08 62.4 50 66.0
Solyc09g050063.1 Solanum lycopersicum HOM05D000964 ORTHO05D003870 1.9e-08 62.4 50 66.0
Gohir.D02G112733 Gossypium hirsutum HOM05D000964 ORTHO05D003870 5.5e-08 60.8 50 62.0
HanXRQChr11g0345271 Helianthus annuus HOM05D000964 ORTHO05D003870 5.5e-08 60.8 50 68.0
Lsat_1_v5_gn_5_80201 Lactuca sativa HOM05D000964 ORTHO05D003870 5.5e-08 60.8 50 68.0
CAN.G1513.11 Capsicum annuum HOM05D000964 ORTHO05D003870 7.2e-08 60.5 50 66.0
Cpa.g.sc54.35 Carica papaya HOM05D000964 ORTHO05D003870 9.4e-08 60.1 50 64.0
Nitab4.5_0020737g0010 Nicotiana tabacum HOM05D000964 ORTHO05D003870 9.4e-08 60.1 50 66.0
Lalb_Chr03g0039311 Lupinus albus HOM05D000964 ORTHO05D004047 2.1e-07 58.9 42 73.8
CAN.G127.14 Capsicum annuum HOM05D000964 ORTHO05D003870 2.7e-07 58.5 50 66.0
Gorai.005G127600 Gossypium raimondii HOM05D000964 ORTHO05D003870 2.7e-07 58.5 50 60.0
MELO3C029309.2 Cucumis melo HOM05D000964 ORTHO05D003870 3.6e-07 58.2 50 62.0
HanXRQChr00c0392g0574491 Helianthus annuus HOM05D000964 ORTHO05D004047 4.7e-07 57.8 50 66.0
HanXRQChr00c0557g0575741 Helianthus annuus HOM05D000964 ORTHO05D003870 4.7e-07 57.8 50 66.0
HanXRQChr00c0593g0576351 Helianthus annuus HOM05D000964 ORTHO05D003870 4.7e-07 57.8 50 66.0
HanXRQChr01g0020231 Helianthus annuus HOM05D000964 ORTHO05D003870 4.7e-07 57.8 50 66.0
HanXRQChr04g0127501 Helianthus annuus HOM05D000964 ORTHO05D003870 4.7e-07 57.8 50 66.0
HanXRQChr05g0152581 Helianthus annuus HOM05D000964 ORTHO05D004047 4.7e-07 57.8 50 66.0
HanXRQChr06g0180681 Helianthus annuus HOM05D000964 ORTHO05D003870 4.7e-07 57.8 50 66.0
HanXRQChr08g0207991 Helianthus annuus HOM05D000964 ORTHO05D003870 4.7e-07 57.8 50 66.0
HanXRQChr10g0284371 Helianthus annuus HOM05D000964 ORTHO05D003870 4.7e-07 57.8 50 66.0
HanXRQChr10g0318071 Helianthus annuus HOM05D000964 ORTHO05D003870 4.7e-07 57.8 50 66.0
HanXRQChr11g0326951 Helianthus annuus HOM05D000964 ORTHO05D003870 4.7e-07 57.8 50 66.0
HanXRQChr12g0369841 Helianthus annuus HOM05D000964 ORTHO05D004047 4.7e-07 57.8 50 66.0
HanXRQCPg0580171 Helianthus annuus HOM05D000964 ORTHO05D003870 4.7e-07 57.8 50 66.0
CAN.G219.34 Capsicum annuum HOM05D000964 ORTHO05D003870 6.1e-07 57.4 46 67.4
Gohir.A05G326932 Gossypium hirsutum HOM05D000964 ORTHO05D003870 6.1e-07 57.4 48 64.6
Sed0010415 Sechium edule HOM05D000964 ORTHO05D003870 6.1e-07 57.4 50 62.0
Sed0026352 Sechium edule HOM05D000964 ORTHO05D004047 6.1e-07 57.4 50 62.0
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 8.0e-07 57.0 47 68.1
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 8.0e-07 57.0 47 68.1
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 8.0e-07 57.0 47 68.1
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 8.0e-07 57.0 47 68.1
CAN.G505.22 Capsicum annuum HOM05D000964 ORTHO05D003870 1.4e-06 56.2 50 64.0
HanXRQChr02g0052621 Helianthus annuus HOM05D000964 ORTHO05D003870 1.4e-06 56.2 50 66.0
Lalb_Chr18g0049661 Lupinus albus HOM05D000964 ORTHO05D003870 1.4e-06 56.2 42 71.4
Gohir.D08G155850 Gossypium hirsutum HOM05D000964 ORTHO05D003870 2.3e-06 55.5 50 58.0
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 2.3e-06 55.5 46 67.4
HanXRQChr17g0544651 Helianthus annuus HOM05D000964 ORTHO05D003870 8.8e-06 53.5 50 62.0


User provided reference genes

Program Settings