Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 0.0e+00 1397.9 772 100.0
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 7.4e-248 860.9 654 72.2
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 5.0e-236 821.6 655 69.5
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 6.1e-234 814.7 657 68.5
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 1.4e-233 813.5 663 67.9
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 2.3e-233 812.8 663 68.2
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 3.1e-230 802.4 654 66.2
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 1.2e-229 800.4 646 66.7
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 3.5e-229 798.9 658 65.8
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 4.5e-229 798.5 647 66.2
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 7.7e-229 797.7 651 66.8
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 7.7e-229 797.7 649 66.6
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 5.0e-228 795.0 662 66.9
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 1.9e-227 793.1 650 66.6
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 5.5e-227 791.6 654 66.5
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 2.7e-226 789.3 680 64.4
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 2.7e-226 789.3 655 66.6
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 6.1e-226 788.1 646 66.4
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 1.8e-225 786.6 657 66.7
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 2.3e-225 786.2 647 64.5
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 4.0e-225 785.4 644 66.8
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 5.2e-225 785.0 680 64.0
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 1.2e-224 783.9 649 65.6
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 2.0e-224 783.1 680 64.0
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 3.7e-223 778.9 659 64.9
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 1.4e-222 776.9 644 65.8
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 2.4e-222 776.2 648 65.9
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 5.4e-222 775.0 649 64.3
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 5.4e-222 775.0 665 65.4
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 1.2e-221 773.9 582 69.9
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 2.7e-221 772.7 612 67.5
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 2.5e-219 766.1 658 63.8
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 4.2e-219 765.4 662 63.1
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 4.7e-218 761.9 652 65.5
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 8.0e-218 761.1 631 65.5
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 8.0e-218 761.1 657 63.8
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 1.4e-217 760.4 659 64.2
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.8e-217 760.0 631 65.5
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.0e-217 759.2 633 65.4
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 1.5e-216 756.9 588 67.9
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 2.8e-215 752.7 662 63.0
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 6.3e-215 751.5 651 64.7
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 6.3e-215 751.5 675 61.8
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 4.1e-214 748.8 640 63.0
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 9.1e-214 747.7 661 62.6
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 2.0e-213 746.5 645 62.8
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 2.3e-212 743.0 662 62.2
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 3.3e-211 739.2 652 62.4
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 1.6e-210 736.9 573 66.3
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 3.0e-209 732.6 662 60.7
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 1.2e-208 730.7 641 64.1
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 1.2e-208 730.7 665 62.3
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 2.0e-208 729.9 644 60.9
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 3.4e-208 729.2 648 63.1
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 5.7e-208 728.4 648 63.1
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 1.7e-207 726.9 686 59.9
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 3.7e-207 725.7 679 59.9
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 6.4e-207 724.9 657 60.7
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 1.6e-205 720.3 589 65.4
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 1.0e-204 717.6 666 61.6
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 1.3e-204 717.2 639 63.4
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 1.5e-203 713.8 636 61.5
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 1.5e-203 713.8 628 61.9
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 2.5e-203 713.0 641 59.4
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 9.5e-203 711.1 642 60.0
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 4.7e-202 708.8 655 59.8
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 6.2e-202 708.4 655 62.3
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 2.3e-201 706.4 656 59.1
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 1.2e-200 704.1 615 60.8
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 1.5e-200 703.7 644 59.3
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 2.0e-200 703.4 638 59.1
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 3.4e-200 702.6 626 60.2
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 3.4e-200 702.6 658 61.1
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 4.4e-200 702.2 588 64.5
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 1.7e-199 700.3 644 59.2
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 1.7e-199 700.3 650 59.5
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 3.7e-199 699.1 636 60.8
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 6.4e-199 698.4 667 58.3
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 1.9e-198 696.8 639 59.3
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 1.2e-197 694.1 638 59.4
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 6.0e-197 691.8 645 58.6
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 1.0e-196 691.0 640 60.5
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 8.3e-191 671.4 546 64.5
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 1.1e-190 671.0 610 61.8
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 1.6e-189 667.2 653 58.5
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 4.6e-189 665.6 643 55.5
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 6.0e-189 665.2 648 58.5
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 1.5e-187 660.6 646 56.7
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 3.7e-183 646.0 604 61.8
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 6.4e-183 645.2 677 55.1
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 1.6e-181 640.6 513 65.9
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 2.1e-178 630.2 649 56.7
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 2.4e-177 626.7 602 60.3
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 4.0e-177 625.9 648 55.4
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 1.2e-176 624.4 642 56.1
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 1.3e-175 620.9 659 56.1
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 3.8e-175 619.4 659 55.8
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 6.2e-170 602.1 676 51.9
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 1.5e-168 597.4 662 55.4
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 6.0e-165 585.5 637 54.8
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 1.3e-151 541.2 444 67.6
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 1.6e-138 497.7 650 48.2
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 3.4e-136 490.0 582 47.1
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 1.3e-130 471.5 638 45.6
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 7.9e-125 452.2 664 42.6
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 1.2e-120 438.3 357 66.7
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 1.5e-118 431.4 638 41.2
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 5.5e-110 402.9 661 42.8
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 6.8e-100 369.4 645 35.8
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 8.3e-98 362.5 437 52.2
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 2.4e-97 360.9 300 64.0
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 3.5e-96 357.1 429 50.3
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 7.7e-96 355.9 343 58.3
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 2.3e-95 354.4 544 42.8
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 2.3e-92 344.4 316 58.9
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 7.0e-81 306.2 250 67.6
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 8.9e-76 289.3 379 46.2
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 1.6e-61 241.9 728 27.9
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 2.8e-61 241.1 708 28.1
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 4.8e-53 213.8 148 66.9
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 2.9e-50 204.5 252 46.0
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 4.6e-48 197.2 246 45.9
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.1e-46 192.6 173 61.8
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 9.9e-43 179.5 629 25.3
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 1.2e-40 172.6 246 42.7
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 1.0e-39 169.5 246 42.3
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 4.8e-37 160.6 109 72.5
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 5.8e-35 153.7 132 56.1
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 8.4e-34 149.8 98 71.4
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 9.3e-33 146.4 178 49.4
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 3.7e-29 134.4 118 53.4
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 3.4e-27 127.9 146 52.7
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 5.9e-27 127.1 99 66.7
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 5.5e-25 120.6 188 43.1
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 2.1e-24 118.6 621 25.8
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 3.9e-23 114.4 297 29.6
Cfa022899 Carpinus fangiana HOM05D004772 ORTHO05D006892 8.5e-18 96.7 401 25.7
HPP92_010686 Vanilla planifolia HOM05D004772 ORTHO05D006892 2.7e-16 91.7 122 45.9
BcaC04g21315 Brassica carinata HOM05D004772 ORTHO05D006892 3.6e-16 91.3 168 37.5
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 6.1e-16 90.5 77 66.2
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 6.7e-15 87.0 142 37.3
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 6.7e-15 87.0 142 37.3
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 6.7e-15 87.0 142 37.3
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 1.5e-14 85.9 142 36.6
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 1.5e-14 85.9 142 36.6
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 2.0e-14 85.5 142 36.6
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 2.6e-14 85.1 110 51.8
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 2.6e-14 85.1 166 39.2
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 4.1e-12 77.8 120 44.2
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 1.5e-11 75.9 99 51.5
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 2.1e-08 65.5 45 64.4
A09p56420 Brassica napus HOM05D004772 ORTHO05D042523 2.3e-07 62.0 47 55.3
BraA09t41036Z Brassica rapa HOM05D004772 ORTHO05D042523 2.3e-07 62.0 47 55.3


User provided reference genes

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