Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E00580 Eucalyptus grandis HOM05D004737 ORTHO05D005623 3.4e-36 154.5 76 100.0
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 2.9e-35 151.4 76 98.7
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 9.2e-26 119.8 76 73.7
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 3.5e-25 117.9 76 69.7
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 3.5e-25 117.9 75 70.7
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 3.5e-25 117.9 75 70.7
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 3.5e-25 117.9 75 70.7
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 3.5e-25 117.9 76 71.1
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 4.6e-25 117.5 75 69.3
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 7.8e-25 116.7 76 72.4
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 1.3e-24 115.9 75 70.7
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 1.7e-24 115.5 76 69.7
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 1.7e-24 115.5 76 69.7
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 1.7e-24 115.5 76 69.7
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 3.0e-24 114.8 74 74.3
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 3.9e-24 114.4 76 71.1
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 8.6e-24 113.2 67 77.6
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 8.6e-24 113.2 71 74.6
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 2.5e-23 111.7 69 73.9
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 2.5e-23 111.7 67 73.1
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 2.5e-23 111.7 76 69.7
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 4.3e-23 110.9 74 68.9
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 4.3e-23 110.9 76 68.4
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 5.6e-23 110.5 70 68.6
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 5.6e-23 110.5 70 68.6
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 9.5e-23 109.8 67 73.1
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 2.1e-22 108.6 68 72.1
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 2.1e-22 108.6 69 68.1
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 2.1e-22 108.6 67 71.6
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 2.1e-22 108.6 67 73.1
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 2.8e-22 108.2 74 66.2
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 4.7e-22 107.5 69 69.6
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 6.2e-22 107.1 68 70.6
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 8.1e-22 106.7 77 66.2
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 1.1e-21 106.3 74 66.2
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.1e-21 106.3 77 67.5
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 1.1e-21 106.3 76 68.4
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 1.4e-21 105.9 70 67.1
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 1.8e-21 105.5 77 67.5
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 2.3e-21 105.1 69 68.1
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 3.1e-21 104.8 75 66.7
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 3.1e-21 104.8 76 61.8
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 4.0e-21 104.4 68 69.1
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 4.0e-21 104.4 66 71.2
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 5.2e-21 104.0 72 65.3
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 5.2e-21 104.0 71 66.2
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 5.2e-21 104.0 71 66.2
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 6.8e-21 103.6 67 65.7
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 6.8e-21 103.6 72 68.1
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 6.8e-21 103.6 73 64.4
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 8.9e-21 103.2 68 69.1
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 8.9e-21 103.2 77 64.9
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 1.2e-20 102.8 72 63.9
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 1.5e-20 102.4 75 58.7
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 2.0e-20 102.1 71 69.0
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 3.4e-20 101.3 73 63.0
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 4.4e-20 100.9 77 66.2
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 5.8e-20 100.5 72 63.9
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 1.3e-19 99.4 77 63.6
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 1.3e-19 99.4 70 67.1
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 4.9e-19 97.4 74 66.2
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 4.9e-19 97.4 73 61.6
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 1.4e-18 95.9 76 61.8
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 1.9e-18 95.5 59 74.6
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 1.9e-18 95.5 59 74.6
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 4.1e-18 94.4 90 52.2
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 5.4e-18 94.0 68 63.2
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 7.1e-18 93.6 68 61.8
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 9.2e-18 93.2 76 59.2
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 9.2e-18 93.2 76 59.2
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 9.2e-18 93.2 76 59.2
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 9.2e-18 93.2 70 60.0
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 1.2e-17 92.8 77 59.7
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 1.2e-17 92.8 76 59.2
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 1.2e-17 92.8 73 61.6
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 1.6e-17 92.4 76 59.2
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 1.6e-17 92.4 76 59.2
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 1.6e-17 92.4 76 59.2
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 1.6e-17 92.4 76 59.2
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 1.6e-17 92.4 68 61.8
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 2.7e-17 91.7 59 71.2
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 2.7e-17 91.7 76 59.2
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 2.7e-17 91.7 76 59.2
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 2.7e-17 91.7 67 62.7
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 3.5e-17 91.3 76 57.9
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 3.5e-17 91.3 76 57.9
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 3.5e-17 91.3 90 48.9
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 4.6e-17 90.9 76 57.9
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 4.6e-17 90.9 76 57.9
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 4.6e-17 90.9 76 57.9
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 4.6e-17 90.9 76 57.9
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 7.8e-17 90.1 76 59.2
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 7.8e-17 90.1 71 57.7
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 1.7e-16 89.0 73 61.6
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 1.5e-15 85.9 70 61.4
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 4.3e-15 84.3 59 69.5
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 7.3e-15 83.6 72 58.3
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 9.5e-15 83.2 60 68.3
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 1.8e-13 79.0 63 57.1
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 2.4e-13 78.6 59 61.0
QL12p033469 Quercus lobata HOM05D004737 ORTHO05D005623 6.4e-11 70.5 46 69.6
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.9e-10 68.9 76 39.5
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 2.1e-09 65.5 72 47.2
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 4.6e-09 64.3 72 47.2
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 4.6e-09 64.3 72 47.2
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 7.8e-09 63.5 70 44.3
Zm00001eb152210 Zea mays HOM05D004737 ORTHO05D005623 7.8e-09 63.5 55 61.8
ECA240G0629 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.0e-08 63.2 63 50.8
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 6.6e-08 60.5 72 44.4
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-07 59.7 71 45.1
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 9.6e-07 56.6 67 44.8
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 8.1e-06 53.5 71 38.0


User provided reference genes

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