Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 0.0e+00 1485.3 729 100.0
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 2.1e-308 1062.0 860 68.1
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 1.2e-154 551.2 881 42.0
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 4.7e-151 539.3 872 42.2
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 1.0e-150 538.1 874 41.9
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 2.6e-149 533.5 867 41.4
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.6e-149 533.5 862 41.3
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 5.7e-149 532.3 867 41.3
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.3e-148 531.2 869 41.2
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 2.8e-148 530.0 867 40.0
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 3.7e-148 529.6 850 42.2
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 3.7e-148 529.6 850 42.2
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 3.7e-148 529.6 849 41.3
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 1.8e-147 527.3 865 40.9
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 1.6e-146 524.2 877 40.0
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 1.9e-144 517.3 884 40.4
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 2.7e-143 513.5 878 40.4
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 6.3e-140 502.3 882 39.3
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 1.4e-139 501.1 864 39.1
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 1.8e-139 500.7 882 39.7
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 9.1e-139 498.4 883 40.0
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 1.2e-138 498.0 883 39.5
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 2.0e-138 497.3 874 39.0
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 2.7e-138 496.9 863 39.5
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 1.7e-137 494.2 879 39.6
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 5.0e-137 492.7 869 38.6
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 5.0e-137 492.7 869 38.6
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 8.5e-137 491.9 869 39.7
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 2.5e-136 490.3 868 40.1
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 4.2e-136 489.6 874 39.2
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 9.4e-136 488.4 875 38.5
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 2.1e-135 487.3 872 38.3
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 5.2e-134 482.6 864 39.2
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 8.8e-134 481.9 887 37.5
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 1.2e-133 481.5 883 37.4
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 3.4e-133 479.9 880 37.8
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 5.7e-133 479.2 893 38.6
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 5.4e-131 472.6 828 38.8
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 3.5e-130 469.9 829 39.1
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 3.8e-129 466.5 878 36.8
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 6.6e-129 465.7 885 38.8
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.5e-128 464.5 878 36.6
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 2.5e-128 463.8 840 38.2
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 4.7e-127 459.5 885 37.6
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 6.1e-127 459.1 905 37.3
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 1.8e-126 457.6 865 38.2
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 2.6e-125 453.8 838 37.6
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 4.4e-125 453.0 883 37.6
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 5.7e-125 452.6 873 37.6
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 9.8e-125 451.8 847 36.7
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 1.3e-124 451.4 831 37.5
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 2.2e-124 450.7 874 37.6
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 7.8e-122 442.2 812 36.9
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 1.0e-121 441.8 906 37.5
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 3.0e-121 440.3 865 36.2
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 1.5e-120 438.0 818 37.8
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 2.5e-120 437.2 916 36.6
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 2.5e-120 437.2 852 36.2
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 2.5e-120 437.2 876 37.0
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 7.3e-120 435.6 629 43.9
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 9.5e-120 435.3 826 38.4
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 1.2e-119 434.9 702 40.7
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 4.7e-119 433.0 878 36.7
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 6.2e-119 432.6 876 36.9
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.0e-118 431.8 900 36.1
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 3.1e-118 430.3 700 43.0
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 4.0e-118 429.9 901 36.1
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 5.2e-118 429.5 900 36.4
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 6.8e-118 429.1 865 35.4
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 8.9e-118 428.7 843 37.5
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 2.0e-117 427.6 866 35.5
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 3.4e-117 426.8 891 35.4
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 5.8e-117 426.0 822 35.9
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 5.8e-117 426.0 906 35.7
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 1.3e-116 424.9 873 36.1
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 2.2e-116 424.1 815 37.3
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.4e-115 421.4 902 34.4
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 7.0e-115 419.1 871 37.2
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 9.2e-115 418.7 826 36.8
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 9.2e-115 418.7 826 36.8
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.2e-114 418.3 850 35.3
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 4.6e-114 416.4 813 36.9
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 7.8e-114 415.6 680 39.9
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 1.5e-112 411.4 865 36.5
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 2.5e-112 410.6 872 36.5
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 5.6e-112 409.5 874 35.0
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 1.1e-110 405.2 881 36.3
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 3.1e-110 403.7 954 33.8
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 2.6e-109 400.6 837 35.4
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 5.8e-109 399.4 914 34.7
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 3.7e-108 396.7 845 37.4
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 3.2e-107 393.7 874 34.8
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 4.1e-107 393.3 827 37.8
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 1.2e-106 391.7 740 37.2
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 4.6e-106 389.8 740 38.1
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 1.5e-104 384.8 514 45.3
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 1.2e-103 381.7 852 33.6
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 4.7e-103 379.8 866 34.1
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 6.2e-103 379.4 532 44.7
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 2.0e-101 374.4 509 44.8
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 5.8e-101 372.9 850 33.6
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 1.3e-100 371.7 693 37.8
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 5.4e-99 366.3 906 33.3
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 3.5e-98 363.6 809 34.2
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 1.4e-91 341.7 853 32.1
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 3.2e-91 340.5 846 33.6
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 1.6e-90 338.2 853 32.7
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 1.2e-85 322.0 662 36.6
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 3.4e-85 320.5 737 35.5
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 9.9e-77 292.4 701 33.7
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 5.5e-75 286.6 383 46.0
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 7.1e-75 286.2 283 54.1
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 1.3e-73 282.0 478 39.1
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 1.1e-70 272.3 611 33.4
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.4e-70 271.2 623 34.2
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 2.2e-68 264.6 556 34.9
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 3.0e-65 254.2 501 33.3
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 3.1e-62 244.2 693 30.2
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 6.5e-60 236.5 632 32.6
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 4.2e-59 233.8 215 59.1
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 2.1e-58 231.5 561 33.2
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 1.5e-53 215.3 329 41.0
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 9.4e-51 206.1 451 32.4
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 3.6e-50 204.1 191 58.1
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 1.1e-48 199.1 184 59.8
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.3e-47 195.7 522 32.2
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 3.7e-47 194.1 221 50.2
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 1.8e-41 175.3 623 28.6
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 3.9e-41 174.1 676 25.4
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 8.8e-41 172.9 162 57.4
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 1.5e-40 172.2 176 53.4
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 6.3e-39 166.8 677 25.6
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 5.3e-38 163.7 194 50.0
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 6.7e-33 146.7 554 28.5
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 2.8e-31 141.4 341 28.7
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 6.3e-31 140.2 316 32.6
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 1.2e-29 136.0 164 47.0
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 1.6e-29 135.6 164 46.3
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 2.0e-29 135.2 550 27.1
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 4.2e-27 127.5 145 50.3
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 5.2e-25 120.6 199 37.7
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 1.7e-23 115.5 134 47.0
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 4.8e-23 114.0 153 43.8
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 1.1e-22 112.8 140 47.1
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 7.0e-22 110.2 134 45.5
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 7.2e-19 100.1 248 28.2
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 7.2e-19 100.1 209 38.8
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 2.1e-18 98.6 68 69.1
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 6.8e-17 93.6 104 51.0
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 8.8e-17 93.2 98 50.0
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 4.4e-16 90.9 300 24.3
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 9.8e-16 89.7 156 39.1
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 1.7e-15 89.0 100 48.0
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 4.9e-15 87.4 100 49.0
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 4.9e-15 87.4 97 52.6
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 6.3e-15 87.0 125 42.4
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 3.1e-14 84.7 273 31.5
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 4.1e-14 84.3 100 45.0
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 5.4e-14 84.0 98 51.0
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 2.7e-13 81.6 100 43.0
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.3e-12 78.6 76 56.6
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 3.8e-12 77.8 124 41.9
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 1.9e-11 75.5 378 23.8
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 7.3e-11 73.6 246 27.2
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 1.0e-09 69.7 71 54.9
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 1.8e-09 68.9 129 34.1
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 8.3e-07 60.1 149 28.9
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 1.4e-06 59.3 102 38.2
CSS0008641 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.4e-06 58.5 57 54.4
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 7.0e-06 57.0 231 26.8
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 9.2e-06 56.6 50 52.0


User provided reference genes

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