Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 1.3e-123 446.4 230 100.0
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 2.7e-76 289.3 226 68.6
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 1.8e-69 266.5 224 62.9
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 3.1e-69 265.8 221 61.1
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 4.1e-69 265.4 224 63.4
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 9.1e-69 264.2 230 60.9
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 1.6e-68 263.5 216 64.4
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 2.9e-67 259.2 230 60.4
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 8.6e-67 257.7 236 57.6
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 1.1e-66 257.3 217 60.4
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 1.5e-66 256.9 234 57.7
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 1.9e-66 256.5 217 60.4
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 3.3e-66 255.8 217 59.4
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 4.2e-66 255.4 223 57.8
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 7.2e-66 254.6 214 60.3
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 1.6e-65 253.4 223 57.8
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 2.1e-65 253.1 215 60.0
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 2.1e-65 253.1 230 57.8
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 2.8e-65 252.7 215 60.9
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 2.8e-65 252.7 230 59.6
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 2.8e-65 252.7 202 62.4
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 3.6e-65 252.3 230 57.8
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 4.7e-65 251.9 217 59.4
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 6.1e-65 251.5 226 57.5
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 8.0e-65 251.1 230 57.8
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 1.0e-64 250.8 229 57.6
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 1.0e-64 250.8 215 60.0
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 1.4e-64 250.4 214 59.3
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.4e-64 250.4 230 57.4
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 3.0e-64 249.2 240 54.6
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 3.0e-64 249.2 217 59.4
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 4.0e-64 248.8 229 57.2
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 4.0e-64 248.8 228 55.7
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 5.2e-64 248.4 226 56.6
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 6.8e-64 248.1 217 59.0
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 6.8e-64 248.1 217 59.0
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 6.8e-64 248.1 214 58.4
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 8.9e-64 247.7 236 57.2
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.5e-63 246.9 208 60.6
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.0e-63 246.5 230 57.0
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 7.5e-63 244.6 229 57.6
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 9.8e-63 244.2 219 59.8
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 1.7e-62 243.4 224 54.9
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 2.2e-62 243.0 229 57.6
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.8e-62 242.7 231 55.4
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 3.7e-62 242.3 257 53.3
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 3.7e-62 242.3 200 62.5
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 6.3e-62 241.5 230 56.5
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 8.3e-62 241.1 229 57.2
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 1.1e-61 240.7 228 57.5
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 3.1e-61 239.2 229 56.3
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 4.1e-61 238.8 226 56.2
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 5.4e-61 238.4 228 54.4
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 9.2e-61 237.7 217 57.1
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 1.2e-60 237.3 230 55.2
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 1.6e-60 236.9 228 54.4
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 1.6e-60 236.9 228 54.4
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 2.0e-60 236.5 195 64.1
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 2.0e-60 236.5 217 56.2
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 2.7e-60 236.1 217 55.3
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 2.7e-60 236.1 215 56.3
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 4.5e-60 235.3 227 55.1
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 4.5e-60 235.3 219 55.7
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 4.5e-60 235.3 210 60.5
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 5.9e-60 235.0 219 55.7
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 7.8e-60 234.6 191 64.4
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 1.0e-59 234.2 231 51.9
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 1.0e-59 234.2 226 54.9
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 2.9e-59 232.6 217 55.3
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 5.0e-59 231.9 207 57.0
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 8.6e-59 231.1 248 49.6
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 1.5e-58 230.3 219 54.8
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 1.9e-58 229.9 222 56.3
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 2.5e-58 229.6 211 57.3
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 3.3e-58 229.2 202 60.4
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 7.3e-58 228.0 234 53.4
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 1.6e-57 226.9 170 65.9
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.6e-57 226.9 185 65.9
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 1.6e-57 226.9 215 55.3
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 6.1e-57 224.9 230 53.0
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 2.3e-56 223.0 180 63.9
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 2.3e-56 223.0 231 54.1
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 4.0e-56 222.2 229 53.3
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 4.9e-54 215.3 228 53.5
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 6.4e-54 214.9 219 53.4
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 1.1e-53 214.2 206 51.9
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 5.4e-53 211.8 219 53.0
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 7.0e-53 211.5 230 50.9
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 1.6e-52 210.3 155 69.0
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 3.5e-52 209.1 232 49.6
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 6.6e-51 204.9 219 51.6
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 8.6e-51 204.5 342 39.5
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.3e-50 202.6 258 48.4
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 1.2e-49 200.7 145 69.0
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 1.6e-49 200.3 204 55.9
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 4.7e-49 198.7 172 59.3
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 2.6e-47 193.0 218 47.2
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 3.4e-47 192.6 227 44.1
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 9.8e-47 191.0 213 49.3
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.7e-46 190.3 191 52.4
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 6.4e-46 188.3 173 57.8
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 8.3e-46 188.0 240 48.3
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 4.1e-45 185.7 205 45.4
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 7.0e-45 184.9 209 49.8
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 3.5e-44 182.6 164 59.8
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 8.6e-43 177.9 153 62.1
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 8.6e-43 177.9 230 41.7
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 1.5e-42 177.2 166 60.8
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 3.1e-40 169.5 165 60.0
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 3.1e-40 169.5 296 37.5
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 7.5e-39 164.9 114 73.7
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 3.7e-38 162.5 220 39.1
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 3.7e-38 162.5 165 58.2
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 1.1e-37 161.0 261 41.0
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 1.9e-37 160.2 223 41.3
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 4.1e-37 159.1 116 71.6
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.6e-33 146.0 145 55.2
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 6.2e-33 145.2 248 38.7
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 1.8e-32 143.7 221 39.8
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 3.2e-29 132.9 162 48.1
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 1.6e-28 130.6 135 48.9
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 6.2e-25 118.6 92 66.3
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 1.8e-24 117.1 224 36.6
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 3.1e-24 116.3 180 45.6
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 2.2e-22 110.2 103 59.2
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 4.2e-21 105.9 212 32.1
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.6e-20 104.0 124 43.5
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 1.5e-18 97.4 99 54.5
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.9e-18 97.1 180 39.4
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 2.5e-18 96.7 164 38.4
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 5.6e-18 95.5 99 54.5
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 2.8e-17 93.2 215 33.5
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 1.8e-16 90.5 66 71.2
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 2.4e-16 90.1 84 59.5
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 4.5e-15 85.9 84 59.5
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 5.8e-15 85.5 84 59.5
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 9.3e-13 78.2 215 28.8
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.1e-10 71.2 66 56.1
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 1.9e-10 70.5 83 49.4
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 7.4e-10 68.6 65 61.5
Lalb_Chr20g0110431 Lupinus albus HOM05D004725 ORTHO05D005683 2.8e-09 66.6 65 50.8
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 3.7e-09 66.2 217 26.7
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 6.9e-08 62.0 76 46.1
GSVIVG01034926001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.7e-06 57.4 88 44.3
Sabra10G0113400 Salix brachista HOM05D004725 ORTHO05D005683 3.8e-06 56.2 148 31.1
CARHR286240 Cardamine hirsuta HOM05D004725 ORTHO05D005683 4.9e-06 55.8 67 40.3


User provided reference genes

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