Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D00249 Eucalyptus grandis HOM05D000042 ORTHO05D000980 2.1e-61 238.8 120 100.0
Eucgr.E01006 Eucalyptus grandis HOM05D000042 ORTHO05D000980 1.9e-25 119.4 110 55.5
Sed0027083 Sechium edule HOM05D000042 ORTHO05D000980 9.4e-17 90.5 113 47.8
Manes.02G168500 Manihot esculenta HOM05D000042 ORTHO05D000980 1.6e-16 89.7 113 44.2
VMungo0647G2314 Vigna mungo HOM05D000042 ORTHO05D000980 4.7e-16 88.2 104 49.0
Cpa.g.sc26.316 Carica papaya HOM05D000042 ORTHO05D000980 6.1e-16 87.8 112 42.9
CSS0013221 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000980 8.0e-16 87.4 106 47.2
Glyma.14G155100 Glycine max HOM05D000042 ORTHO05D000980 8.0e-16 87.4 106 50.0
Prupe.1G489400 Prunus persica HOM05D000042 ORTHO05D000980 8.0e-16 87.4 106 48.1
Thecc.08G133200 Theobroma cacao HOM05D000042 ORTHO05D000980 8.0e-16 87.4 107 47.7
ClCG11G016000 Citrullus lanatus HOM05D000042 ORTHO05D000980 1.0e-15 87.0 111 45.9
Phvul.001G068200 Phaseolus vulgaris HOM05D000042 ORTHO05D000980 1.4e-15 86.7 104 48.1
Glyma.13G034100 Glycine max HOM05D000042 ORTHO05D000980 1.8e-15 86.3 106 49.1
PGR044G1215 Punica granatum HOM05D000042 ORTHO05D000980 4.0e-15 85.1 114 47.4
Lj1g0009507 Lotus japonicus HOM05D000042 ORTHO05D000980 5.2e-15 84.7 106 50.0
TWI34G0794 Tripterygium wilfordii HOM05D000042 ORTHO05D000980 5.2e-15 84.7 104 49.0
CsaV3_4G028010 Cucumis sativus L. HOM05D000042 ORTHO05D000980 1.2e-14 83.6 111 45.0
MELO3C010515.2 Cucumis melo HOM05D000042 ORTHO05D000980 1.5e-14 83.2 111 45.0
Duzib093G1499 Durio zibethinus HOM05D000042 ORTHO05D000980 1.5e-14 83.2 114 43.0
Gohir.A02G070800 Gossypium hirsutum HOM05D000042 ORTHO05D000980 2.0e-14 82.8 110 45.5
Gohir.D02G078000 Gossypium hirsutum HOM05D000042 ORTHO05D000980 2.0e-14 82.8 110 45.5
Gorai.005G087600 Gossypium raimondii HOM05D000042 ORTHO05D000980 2.0e-14 82.8 110 45.5
Ciclev10002422m.g Citrus clementina HOM05D000042 ORTHO05D000980 3.4e-14 82.0 117 47.0
Hma1.2p1_0880F.1_g231800 Hydrangea macrophylla HOM05D000042 ORTHO05D000980 3.4e-14 82.0 114 47.4
Hma1.2p1_1121F.1_g259270 Hydrangea macrophylla HOM05D000042 ORTHO05D000980 3.4e-14 82.0 116 45.7
Actinidia15212 Actinidia chinensis HOM05D000042 ORTHO05D000980 7.5e-14 80.9 112 44.6
Manes.18G082400 Manihot esculenta HOM05D000042 ORTHO05D000980 7.5e-14 80.9 113 42.5
Ca_12647_v3 Cicer arietinum L. HOM05D000042 ORTHO05D000980 1.7e-13 79.7 104 44.2
CiPaw.15G031300 Carya illinoinensis HOM05D000042 ORTHO05D000980 2.2e-13 79.3 114 44.7
Carub.0006s1863 Capsella rubella HOM05D000042 ORTHO05D000980 2.8e-13 79.0 108 42.6
Actinidia21276 Actinidia chinensis HOM05D000042 ORTHO05D000980 3.7e-13 78.6 106 44.3
CSS0008613 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000980 3.7e-13 78.6 106 45.3
Atru.chr13.1570 Acer truncatum HOM05D000042 ORTHO05D000980 4.8e-13 78.2 116 44.8
QL09p032472 Quercus lobata HOM05D000042 ORTHO05D000980 4.8e-13 78.2 111 42.3
Ciclev10002471m.g Citrus clementina HOM05D000042 ORTHO05D000980 8.3e-13 77.4 107 40.2
Eucgr.E01007 Eucalyptus grandis HOM05D000042 ORTHO05D000980 1.1e-12 77.0 74 55.4
Potri.005G182200 Populus trichocarpa HOM05D000042 ORTHO05D000980 1.1e-12 77.0 107 42.1
Nitab4.5_0000508g0030 Nicotiana tabacum HOM05D000042 ORTHO05D000980 1.8e-12 76.3 113 38.9
Potri.002G079000 Populus trichocarpa HOM05D000042 ORTHO05D000980 1.8e-12 76.3 107 42.1
CAN.G348.10 Capsicum annuum HOM05D000042 ORTHO05D000980 2.4e-12 75.9 117 41.0
Sopen08g021160 Solanum pennellii HOM05D000042 ORTHO05D000980 2.4e-12 75.9 114 37.7
GSVIVG01008806001 Vitis vinifera HOM05D000042 ORTHO05D000980 2.4e-12 75.9 108 44.4
QL09p032453 Quercus lobata HOM05D000042 ORTHO05D000980 3.1e-12 75.5 111 41.4
SHI09220 Sapria himalayana HOM05D000042 ORTHO05D000980 3.1e-12 75.5 111 43.2
HanXRQChr02g0045511 Helianthus annuus HOM05D000042 ORTHO05D000980 4.1e-12 75.1 103 43.7
Cfa018130 Carpinus fangiana HOM05D000042 ORTHO05D000980 5.4e-12 74.7 106 40.6
Thhalv10014683m.g Eutrema salsugineum HOM05D000042 ORTHO05D000980 5.4e-12 74.7 108 41.7
Haze_17996 Corylus avellana HOM05D000042 ORTHO05D000980 7.0e-12 74.3 112 40.2
ECA236G4655 Erigeron canadensis HOM05D000042 ORTHO05D000980 7.0e-12 74.3 103 41.7
Solyc08g067230.4 Solanum lycopersicum HOM05D000042 ORTHO05D000980 7.0e-12 74.3 114 36.8
BcaB05g22859 Brassica carinata HOM05D000042 ORTHO05D000980 9.1e-12 73.9 108 41.7
ECA236G2126 Erigeron canadensis HOM05D000042 ORTHO05D000980 1.2e-11 73.6 103 40.8
HanXRQChr12g0358781 Helianthus annuus HOM05D000042 ORTHO05D000980 1.2e-11 73.6 103 42.7
Aa31LG1G14390 Aethionema arabicum HOM05D000042 ORTHO05D000980 1.6e-11 73.2 108 39.8
Nitab4.5_0004346g0030 Nicotiana tabacum HOM05D000042 ORTHO05D000980 1.6e-11 73.2 113 37.2
Sp6g24170 Schrenkiella parvula HOM05D000042 ORTHO05D000980 1.6e-11 73.2 108 39.8
AT5G20240 Arabidopsis thaliana HOM05D000042 ORTHO05D000980 2.0e-11 72.8 108 40.7
PGSC0003DMG401007392 Solanum tuberosum HOM05D000042 ORTHO05D000980 2.0e-11 72.8 114 37.7
CARHR192590 Cardamine hirsuta HOM05D000042 ORTHO05D000980 2.7e-11 72.4 108 42.6
Peaxi162Scf00922g00026 Petunia axillaris HOM05D000042 ORTHO05D000980 2.7e-11 72.4 127 35.4
THA.LOC104808253 Tarenaya hassleriana HOM05D000042 ORTHO05D000980 3.5e-11 72.0 116 37.9
MBI18_g09769_MAGBIO Magnolia biondii HOM05D000042 ORTHO05D000980 4.5e-11 71.6 99 40.4
CAN.G531.15 Capsicum annuum HOM05D000042 ORTHO05D000980 1.0e-10 70.5 112 42.0
RcHm_v2.0_Chr6g0296731 Rosa chinensis HOM05D000042 ORTHO05D000980 1.3e-10 70.1 103 39.8
CSS0022940 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000980 2.3e-10 69.3 107 40.2
THA.LOC104815100 Tarenaya hassleriana HOM05D000042 ORTHO05D000980 2.3e-10 69.3 110 40.0
Aqoxy6G00308 Aquilegia oxysepala HOM05D000042 ORTHO05D000980 3.8e-10 68.6 109 39.4
MSTRG.25848 Avicennia marina HOM05D000042 ORTHO05D000980 3.8e-10 68.6 108 38.9
Cfa018426 Carpinus fangiana HOM05D000042 ORTHO05D000980 3.8e-10 68.6 113 37.2
BcaC03g13745 Brassica carinata HOM05D000042 ORTHO05D000980 5.0e-10 68.2 111 40.5
CANSAT64G0749 Cannabis sativa HOM05D000042 ORTHO05D000980 5.0e-10 68.2 126 34.9
Migut.A00326 Erythranthe guttata HOM05D000042 ORTHO05D000980 6.6e-10 67.8 109 41.3
FAN20G0851 Fragaria x ananassa HOM05D000042 ORTHO05D000980 6.6e-10 67.8 98 46.9
Nitab4.5_0000418g0050 Nicotiana tabacum HOM05D000042 ORTHO05D000980 6.6e-10 67.8 109 38.5
Glyma.04G245500 Glycine max HOM05D000042 ORTHO05D000980 8.6e-10 67.4 73 54.8
TPR.G28821 Trifolium pratense HOM05D000042 ORTHO05D000980 8.6e-10 67.4 73 53.4
A03p09950 Brassica napus HOM05D000042 ORTHO05D000980 1.1e-09 67.0 108 40.7
C03p11520 Brassica napus HOM05D000042 ORTHO05D000980 1.1e-09 67.0 108 40.7
BolC3t13624H Brassica oleracea HOM05D000042 ORTHO05D000980 1.1e-09 67.0 108 40.7
Gohir.A01G190300 Gossypium hirsutum HOM05D000042 ORTHO05D000980 1.1e-09 67.0 109 40.4
Nitab4.5_0005166g0020 Nicotiana tabacum HOM05D000042 ORTHO05D000980 1.1e-09 67.0 109 38.5
VMungo1309G1360 Vigna mungo HOM05D000042 ORTHO05D000980 1.1e-09 67.0 73 54.8
Ca_16609_v3 Cicer arietinum L. HOM05D000042 ORTHO05D000980 1.5e-09 66.6 73 54.8
Glyma.06G117600 Glycine max HOM05D000042 ORTHO05D000980 1.5e-09 66.6 62 61.3
Psat5g084680 Pisum sativum HOM05D000042 ORTHO05D000980 1.5e-09 66.6 73 54.8
A02p06120 Brassica napus HOM05D000042 ORTHO05D000980 1.9e-09 66.2 118 38.1
Peaxi162Scf00591g00074 Petunia axillaris HOM05D000042 ORTHO05D000980 1.9e-09 66.2 108 41.7
Phvul.009G130000 Phaseolus vulgaris HOM05D000042 ORTHO05D000980 1.9e-09 66.2 73 54.8
HanXRQChr02g0040221 Helianthus annuus HOM05D000042 ORTHO05D000980 2.5e-09 65.9 98 41.8
Oeu020103.1 Olea europaea HOM05D000042 ORTHO05D000980 2.5e-09 65.9 109 37.6
BcaC04g19414 Brassica carinata HOM05D000042 ORTHO05D000980 3.3e-09 65.5 108 39.8
C09p55960 Brassica napus HOM05D000042 ORTHO05D000980 3.3e-09 65.5 108 39.8
BolC9t58465H Brassica oleracea HOM05D000042 ORTHO05D000980 3.3e-09 65.5 108 39.8
Lj1g0021593 Lotus japonicus HOM05D000042 ORTHO05D000980 3.3e-09 65.5 77 49.4
SalBow4G1774 Salvia bowleyana HOM05D000042 ORTHO05D000980 3.3e-09 65.5 107 38.3
Medtr3g088615 Medicago truncatula HOM05D000042 ORTHO05D000980 4.2e-09 65.1 73 53.4
TAR625G0222 Trochodendron aralioides HOM05D000042 ORTHO05D000980 4.2e-09 65.1 105 38.1
SGA_v2.0_scaffold147G36311 Striga asiatica HOM05D000042 ORTHO05D000980 5.5e-09 64.7 115 35.7
A10p19700 Brassica napus HOM05D000042 ORTHO05D000980 7.2e-09 64.3 108 38.9
Haze_17636 Corylus avellana HOM05D000042 ORTHO05D000980 7.2e-09 64.3 112 36.6
Solyc06g059970.4 Solanum lycopersicum HOM05D000042 ORTHO05D000980 7.2e-09 64.3 111 34.2
Sopen06g020070 Solanum pennellii HOM05D000042 ORTHO05D000980 7.2e-09 64.3 111 34.2
Sc26g0002920 Simmondsia chinensis HOM05D000042 ORTHO05D000980 9.5e-09 63.9 109 39.4
Nn1g08955 Nelumbo nucifera HOM05D000042 ORTHO05D000980 3.6e-08 62.0 104 37.5
arahy.Tifrunner.gnm1.ann1.NKL1UU Arachis hypogaea HOM05D000042 ORTHO05D000980 4.7e-08 61.6 73 50.7
FvH4_2g27870 Fragaria vesca HOM05D000042 ORTHO05D000980 4.7e-08 61.6 97 43.3
TWI60G1129 Tripterygium wilfordii HOM05D000042 ORTHO05D000980 4.7e-08 61.6 55 56.4
BcaB08g36537 Brassica carinata HOM05D000527 ORTHO05D000559 6.1e-08 61.2 99 39.4
Lalb_Chr08g0241111 Lupinus albus HOM05D000042 ORTHO05D000980 6.1e-08 61.2 73 49.3
BolC2t07028H Brassica oleracea HOM05D000042 ORTHO05D000980 8.0e-08 60.8 127 35.4
arahy.Tifrunner.gnm1.ann1.78PTZY Arachis hypogaea HOM05D000042 ORTHO05D000980 1.8e-07 59.7 73 49.3
Dinv14692 Davidia involucrata HOM05D000042 ORTHO05D000980 1.8e-07 59.7 58 50.0
FAN27G1355 Fragaria x ananassa HOM05D000042 ORTHO05D000980 1.8e-07 59.7 110 40.0
Oeu030210.2 Olea europaea HOM05D000042 ORTHO05D000980 1.8e-07 59.7 117 35.0
Gorai.002G223100 Gossypium raimondii HOM05D000042 ORTHO05D000980 2.3e-07 59.3 128 35.9
RcHm_v2.0_Chr6g0296721 Rosa chinensis HOM05D000042 ORTHO05D000980 3.0e-07 58.9 96 43.8
TPR.G37973 Trifolium pratense HOM05D000042 ORTHO05D000980 3.0e-07 58.9 57 56.1
FvH4_2g27860 Fragaria vesca HOM05D000042 ORTHO05D000980 4.0e-07 58.5 102 40.2
Rhsim11G0071800 Rhododendron simsii HOM05D000042 ORTHO05D000980 4.0e-07 58.5 117 35.0
BraA02t05562Z Brassica rapa HOM05D000042 ORTHO05D000980 5.2e-07 58.2 108 37.0
DCAR_014370 Daucus carota HOM05D000042 ORTHO05D000980 5.2e-07 58.2 102 36.3
FAN15G0410 Fragaria x ananassa HOM05D000042 ORTHO05D000980 5.2e-07 58.2 110 39.1
Lalb_Chr08g0241091 Lupinus albus HOM05D000042 ORTHO05D000980 5.2e-07 58.2 62 53.2
CANSAT64G2469 Cannabis sativa HOM05D000042 ORTHO05D000980 6.8e-07 57.8 123 34.1
Cfa018427 Carpinus fangiana HOM05D000042 ORTHO05D000980 6.8e-07 57.8 105 37.1
Lsat_1_v5_gn_1_7541 Lactuca sativa HOM05D000042 ORTHO05D000980 1.5e-06 56.6 70 42.9
Cc10_g13750 Coffea canephora HOM05D000042 ORTHO05D000980 2.0e-06 56.2 106 37.7
MBI03_g31894_MAGBIO Magnolia biondii HOM05D000042 ORTHO05D000980 2.0e-06 56.2 104 37.5
MBI03_g39655_MAGBIO Magnolia biondii HOM05D000042 ORTHO05D000980 2.0e-06 56.2 104 37.5
Medtr1g029670 Medicago truncatula HOM05D000042 ORTHO05D000980 4.4e-06 55.1 55 52.7


User provided reference genes

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