Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C04186 Eucalyptus grandis HOM05D005966 ORTHO05D007584 0.0e+00 1296.2 652 100.0
CiPaw.04G170200 Carya illinoinensis HOM05D005966 ORTHO05D007584 1.1e-271 939.9 650 73.2
Haze_25609 Corylus avellana HOM05D005966 ORTHO05D007584 1.2e-267 926.4 669 70.3
PGR102G3358 Punica granatum HOM05D005966 ORTHO05D007584 2.3e-266 922.2 654 73.2
Cfa003353 Carpinus fangiana HOM05D005966 ORTHO05D007584 4.3e-265 917.9 658 70.8
Prupe.7G240500 Prunus persica HOM05D005966 ORTHO05D007584 1.1e-260 903.3 655 71.1
GSVIVG01015509001 Vitis vinifera HOM05D005966 ORTHO05D007584 7.1e-260 900.6 662 68.9
MD15G1175600 Malus domestica HOM05D005966 ORTHO05D007584 3.0e-258 895.2 657 69.3
Dinv36541 Davidia involucrata HOM05D005966 ORTHO05D007584 1.4e-255 886.3 665 68.3
Duzib187G1826 Durio zibethinus HOM05D005966 ORTHO05D007584 5.8e-254 880.9 666 67.9
Thecc.09G123800 Theobroma cacao HOM05D005966 ORTHO05D007584 1.2e-251 873.2 668 66.9
Atru.chr7.1212 Acer truncatum HOM05D005966 ORTHO05D007584 1.6e-251 872.8 661 67.3
CANSAT11G2564 Cannabis sativa HOM05D005966 ORTHO05D007584 1.6e-251 872.8 663 68.2
Ciclev10007689m.g Citrus clementina HOM05D005966 ORTHO05D007584 1.3e-250 869.8 659 66.8
FvH4_5g23630 Fragaria vesca HOM05D005966 ORTHO05D007584 2.5e-249 865.5 657 67.9
RcHm_v2.0_Chr7g0212931 Rosa chinensis HOM05D005966 ORTHO05D007584 2.5e-249 865.5 657 68.3
FAN13G2896 Fragaria x ananassa HOM05D005966 ORTHO05D007584 8.2e-248 860.5 658 67.5
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 2.4e-247 859.0 655 67.6
Hma1.2p1_0018F.1_g012590 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 1.7e-245 852.8 665 65.6
Gohir.A07G035000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.9e-244 849.4 665 64.8
Gorai.001G041100 Gossypium raimondii HOM05D005966 ORTHO05D007584 7.2e-244 847.4 664 64.9
Potri.015G057100 Populus trichocarpa HOM05D005966 ORTHO05D007584 1.1e-239 833.6 667 63.1
vmacro06121 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 1.5e-238 829.7 678 64.3
vmacro06181 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 1.5e-238 829.7 678 64.3
Actinidia07431 Actinidia chinensis HOM05D005966 ORTHO05D007584 1.0e-237 827.0 661 65.2
Nn2g12002 Nelumbo nucifera HOM05D005966 ORTHO05D007584 2.9e-237 825.5 663 64.3
QL02p087915 Quercus lobata HOM05D005966 ORTHO05D007584 5.0e-237 824.7 911 51.5
FAN18G2691 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.1e-236 823.5 632 67.2
ClCG08G000940 Citrullus lanatus HOM05D005966 ORTHO05D007584 7.2e-236 820.8 658 65.3
CsaV3_5G040100 Cucumis sativus L. HOM05D005966 ORTHO05D007584 7.2e-236 820.8 658 65.5
Gorai.009G019100 Gossypium raimondii HOM05D005966 ORTHO05D007584 2.1e-235 819.3 672 63.7
TAR636G0633 Trochodendron aralioides HOM05D005966 ORTHO05D007584 2.7e-235 818.9 636 66.0
Gohir.A05G017800 Gossypium hirsutum HOM05D005966 ORTHO05D007584 6.7e-234 814.3 672 63.2
MELO3C022187.2 Cucumis melo HOM05D005966 ORTHO05D007584 2.0e-233 812.8 658 64.4
Cc06_g08730 Coffea canephora HOM05D005966 ORTHO05D007584 4.4e-233 811.6 671 61.7
Sed0002176 Sechium edule HOM05D005966 ORTHO05D007584 1.8e-231 806.2 660 63.6
arahy.Tifrunner.gnm1.ann1.QB31BF Arachis hypogaea HOM05D005966 ORTHO05D007584 3.1e-231 805.4 653 65.1
Lj7C631G5 Lonicera japonica HOM05D005966 ORTHO05D007584 4.1e-231 805.1 756 58.9
Glyma.05G009700 Glycine max HOM05D005966 ORTHO05D007584 1.2e-230 803.5 658 64.6
CAN.G377.10 Capsicum annuum HOM05D005966 ORTHO05D007584 1.5e-230 803.1 657 63.3
DCAR_014873 Daucus carota HOM05D005966 ORTHO05D007584 2.0e-230 802.7 666 62.9
Sabra15G0082400 Salix brachista HOM05D005966 ORTHO05D007584 2.0e-230 802.7 667 61.6
Solyc12g006650.2 Solanum lycopersicum HOM05D005966 ORTHO05D007584 7.7e-230 800.8 658 62.9
PGSC0003DMG400020667 Solanum tuberosum HOM05D005966 ORTHO05D007584 1.7e-229 799.7 662 62.4
Glyma.17G117600 Glycine max HOM05D005966 ORTHO05D007584 2.9e-229 798.9 658 64.3
Sopen12g002600 Solanum pennellii HOM05D005966 ORTHO05D007584 3.8e-229 798.5 658 62.9
PSO455G0207 Papaver somniferum HOM05D005966 ORTHO05D007584 6.5e-229 797.7 660 62.3
Actinidia26399 Actinidia chinensis HOM05D005966 ORTHO05D007584 5.5e-228 794.7 684 62.4
arahy.Tifrunner.gnm1.ann1.Z0FLIL Arachis hypogaea HOM05D005966 ORTHO05D007584 7.2e-228 794.3 666 63.5
VMungo1215G0752 Vigna mungo HOM05D005966 ORTHO05D007584 7.2e-228 794.3 665 63.9
Lalb_Chr07g0178861 Lupinus albus HOM05D005966 ORTHO05D007584 9.4e-228 793.9 661 64.0
Lj4g0014642 Lotus japonicus HOM05D005966 ORTHO05D007584 6.1e-227 791.2 655 64.0
Phvul.003G161800 Phaseolus vulgaris HOM05D005966 ORTHO05D007584 1.0e-226 790.4 665 63.9
PSO170G3915 Papaver somniferum HOM05D005966 ORTHO05D007584 1.4e-226 790.0 660 62.1
Nitab4.5_0007523g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 3.0e-226 788.9 663 62.1
Manes.06G049700 Manihot esculenta HOM05D005966 ORTHO05D007584 1.5e-225 786.6 662 63.1
Nitab4.5_0010819g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 3.3e-225 785.4 666 62.0
CSS0033485 Camellia sinensis var. sinensis HOM05D005966 ORTHO05D007584 1.8e-223 779.6 672 62.8
Gohir.D07G039000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.7e-221 773.1 665 60.3
Ca_21691_v3 Cicer arietinum L. HOM05D005966 ORTHO05D007584 2.2e-221 772.7 655 63.2
TPR.G10691 Trifolium pratense HOM05D005966 ORTHO05D007584 2.5e-220 769.2 653 62.8
MSTRG.14036 Avicennia marina HOM05D005966 ORTHO05D007584 4.2e-220 768.5 665 59.8
Medtr4g114100 Medicago truncatula HOM05D005966 ORTHO05D007584 4.7e-219 765.0 651 62.4
Aqoxy5G00491 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 8.0e-219 764.2 660 60.3
SGA_v2.0_scaffold163G38051 Striga asiatica HOM05D005966 ORTHO05D007584 1.0e-218 763.8 670 60.4
Psat4g039400 Pisum sativum HOM05D005966 ORTHO05D007584 2.0e-217 759.6 651 61.6
ECA236G0249 Erigeron canadensis HOM05D005966 ORTHO05D007584 4.1e-215 751.9 658 60.9
Oeu018459.1 Olea europaea HOM05D005966 ORTHO05D007584 7.7e-214 747.7 644 59.3
Gohir.D05G018700 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.7e-213 746.5 672 59.2
Peaxi162Scf00984g00027 Petunia axillaris HOM05D005966 ORTHO05D007584 2.9e-213 745.7 631 61.5
Migut.E01544 Erythranthe guttata HOM05D005966 ORTHO05D007584 5.0e-213 745.0 664 60.2
HanXRQChr04g0104201 Helianthus annuus HOM05D005966 ORTHO05D007584 1.9e-212 743.0 654 60.1
Rhsim03G0247300 Rhododendron simsii HOM05D005966 ORTHO05D007584 1.2e-211 740.3 584 66.4
Oeu021589.1 Olea europaea HOM05D005966 ORTHO05D007584 6.1e-211 738.0 633 60.0
Sp6g24230 Schrenkiella parvula HOM05D005966 ORTHO05D007584 5.7e-209 731.5 661 57.9
Lsat_1_v5_gn_8_59020 Lactuca sativa HOM05D005966 ORTHO05D007584 1.3e-208 730.3 667 59.7
A03p09900 Brassica napus HOM05D005966 ORTHO05D007584 4.9e-208 728.4 663 57.6
Aa31LG1G14440 Aethionema arabicum HOM05D005966 ORTHO05D007584 2.4e-207 726.1 654 57.6
C03p11480 Brassica napus HOM05D005966 ORTHO05D007584 2.4e-207 726.1 662 57.6
Thhalv10012923m.g Eutrema salsugineum HOM05D005966 ORTHO05D007584 4.1e-207 725.3 657 57.5
SalBow1G1471 Salvia bowleyana HOM05D005966 ORTHO05D007584 7.0e-207 724.5 746 53.1
BolC3t13620H Brassica oleracea HOM05D005966 ORTHO05D007584 1.6e-206 723.4 660 57.9
THA.LOC104799647 Tarenaya hassleriana HOM05D005966 ORTHO05D007584 3.5e-206 722.2 655 57.6
AL6G31730 Arabidopsis lyrata HOM05D005966 ORTHO05D007584 1.3e-205 720.3 663 57.5
Carub.0006s1857 Capsella rubella HOM05D005966 ORTHO05D007584 5.0e-205 718.4 660 56.8
CARHR192650 Cardamine hirsuta HOM05D005966 ORTHO05D007584 9.5e-204 714.1 660 57.0
AT5G20170 Arabidopsis thaliana HOM05D005966 ORTHO05D007584 2.1e-203 713.0 667 57.0
BraA03t10303Z Brassica rapa HOM05D005966 ORTHO05D007584 8.9e-202 707.6 663 56.4
AUR62011094 Chenopodium quinoa HOM05D005966 ORTHO05D007584 1.2e-198 697.2 659 56.1
AUR62033484 Chenopodium quinoa HOM05D005966 ORTHO05D007584 2.9e-197 692.6 659 56.0
HPP92_009844 Vanilla planifolia HOM05D005966 ORTHO05D007584 3.4e-193 679.1 665 54.4
EL10Ac8g18623 Beta vulgaris HOM05D005966 ORTHO05D007584 6.4e-192 674.9 656 54.1
Hund26492 Selenicereus undatus HOM05D005966 ORTHO05D007584 8.3e-192 674.5 658 54.1
Sabra15G0082900 Salix brachista HOM05D005966 ORTHO05D007584 2.3e-189 666.4 676 53.6
MD02G1034800 Malus domestica HOM05D005966 ORTHO05D007584 1.2e-187 660.6 678 56.3
ATR1156G034 Amborella trichopoda HOM05D005966 ORTHO05D007584 1.1e-180 637.5 668 51.9
Ah.14g080180 Amaranthus hybridus HOM05D005966 ORTHO05D007584 1.4e-178 630.6 625 53.1
Os12g0638600 Oryza sativa ssp. japonica HOM05D005966 ORTHO05D007584 6.2e-171 605.1 666 50.6
Cpa.g.sc75.51 Carica papaya HOM05D005966 ORTHO05D007584 8.1e-163 578.2 488 60.9
CDE01G0041 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 1.7e-160 570.5 555 56.6
Zm00001eb207940 Zea mays HOM05D005966 ORTHO05D007584 4.9e-160 568.9 669 48.3
SEGI_37567 Sequoiadendron giganteum HOM05D005966 ORTHO05D007584 1.4e-159 567.4 708 45.6
Sc08g0006730 Simmondsia chinensis HOM05D005966 ORTHO05D007584 9.3e-143 511.5 530 51.5
unitig_578.g16582 Utricularia gibba HOM05D005966 ORTHO05D007584 9.6e-140 501.5 650 42.9
Zm00001eb334260 Zea mays HOM05D005966 ORTHO05D007584 8.5e-128 461.8 539 48.8
Glyma.14G007400 Glycine max HOM05D005966 ORTHO05D007584 1.2e-102 378.3 294 66.7
Mapoly0010s0026 Marchantia polymorpha HOM05D005966 ORTHO05D007584 2.1e-94 350.9 714 34.0
SHI18656 Sapria himalayana HOM05D005966 ORTHO05D007584 2.9e-83 313.9 533 39.0
Pp3c3_25450 Physcomitrium patens HOM05D005966 ORTHO05D007584 1.3e-80 305.1 649 33.3
SMO200G0046 Selaginella moellendorffii HOM05D005966 ORTHO05D007584 6.6e-80 302.8 643 30.6
COL.COLO4_05778 Corchorus olitorius HOM05D005966 ORTHO05D007584 5.6e-79 299.7 377 45.6
FAN08G0676 Fragaria x ananassa HOM05D005966 ORTHO05D007584 9.5e-63 245.7 165 75.8
AagrBONN_evm.TU.Sc2ySwM_117.630 Anthoceros agrestis HOM05D005966 ORTHO05D007584 2.2e-51 208.0 467 33.4
TAR625G1387 Trochodendron aralioides HOM05D005966 ORTHO05D007584 2.9e-51 207.6 344 40.4
Sc08g0006740 Simmondsia chinensis HOM05D005966 ORTHO05D007584 1.6e-46 191.8 135 71.9
Dinv41526 Davidia involucrata HOM05D006513 ORTHO05D008150 4.6e-41 173.7 163 54.0
SHI18657 Sapria himalayana HOM05D005966 ORTHO05D007584 2.8e-38 164.5 154 60.4
Cpa.g.sc75.52 Carica papaya HOM05D005966 ORTHO05D007584 1.5e-31 142.1 100 73.0
Aqoxy7G02129 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 4.9e-27 127.1 162 52.5
CBR_g48370 Chara braunii HOM05D005966 ORTHO05D000048 1.9e-26 125.2 250 36.4
Hma1.2p1_0090F.1_g045710 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 1.5e-20 105.5 110 49.1
COL.COLO4_05779 Corchorus olitorius HOM05D005966 ORTHO05D007584 1.9e-18 98.6 58 75.9
CAN.G925.3 Capsicum annuum HOM05D005966 ORTHO05D007584 2.1e-17 95.1 85 51.8
GSVIVG01027692001 Vitis vinifera HOM05D005966 ORTHO05D007584 4.3e-15 87.4 125 43.2
CAN.G1289.8 Capsicum annuum HOM05D005966 ORTHO05D007584 3.7e-14 84.3 57 63.2
Lsat_1_v5_gn_8_82580 Lactuca sativa HOM05D005966 ORTHO05D007584 1.7e-11 75.5 48 77.1
CDE11G0857 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 5.0e-11 73.9 69 58.0
TAR626G0958 Trochodendron aralioides HOM05D005966 ORTHO05D007584 1.3e-06 59.3 37 81.1
AUR62041250 Chenopodium quinoa HOM05D005966 ORTHO05D007584 2.8e-06 58.2 50 66.0
TAR362G1246 Trochodendron aralioides HOM05D005966 ORTHO05D007584 6.3e-06 57.0 37 78.4


User provided reference genes

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