Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C03852 Eucalyptus grandis HOM05D001384 ORTHO05D001215 2.0e-74 282.3 144 100.0
Manes.16G116900 Manihot esculenta HOM05D001384 ORTHO05D001215 1.3e-12 77.0 50 74.0
Manes.03G019400 Manihot esculenta HOM05D001384 ORTHO05D001215 9.3e-11 70.9 68 51.5
Eucgr.C01051 Eucalyptus grandis HOM05D001384 ORTHO05D001215 2.1e-10 69.7 51 70.6
Oeu002227.1 Olea europaea HOM05D001384 ORTHO05D001215 1.0e-09 67.4 50 66.0
Oeu055863.1 Olea europaea HOM05D001384 ORTHO05D001215 3.0e-09 65.9 50 66.0
MBI04_g08938_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 3.9e-09 65.5 50 70.0
Sc08g0007440 Simmondsia chinensis HOM05D001384 ORTHO05D001215 5.1e-09 65.1 76 51.3
EL10Ac8g18508 Beta vulgaris HOM05D001384 ORTHO05D001215 1.1e-08 63.9 50 62.0
Potri.018G078801 Populus trichocarpa HOM05D001384 ORTHO05D001215 1.1e-08 63.9 49 63.3
Ciclev10010340m.g Citrus clementina HOM05D001384 ORTHO05D001215 1.5e-08 63.5 49 67.3
Atru.chr7.1336 Acer truncatum HOM05D001384 ORTHO05D001215 1.9e-08 63.2 68 58.8
SalBow1G1089 Salvia bowleyana HOM05D001384 ORTHO05D001215 2.5e-08 62.8 63 58.7
Haze_25705 Corylus avellana HOM05D001384 ORTHO05D001215 4.3e-08 62.0 56 60.7
Gohir.A08G240900 Gossypium hirsutum HOM05D001384 ORTHO05D001215 4.3e-08 62.0 62 56.5
MBI01_g34159_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 4.3e-08 62.0 60 50.0
Sed0004504 Sechium edule HOM05D001384 ORTHO05D001215 5.6e-08 61.6 68 50.0
Cc06_g09580 Coffea canephora HOM05D001384 ORTHO05D001215 7.4e-08 61.2 52 67.3
Gohir.D08G261600 Gossypium hirsutum HOM05D001384 ORTHO05D001215 7.4e-08 61.2 56 58.9
Gorai.004G279700 Gossypium raimondii HOM05D001384 ORTHO05D001215 7.4e-08 61.2 56 58.9
RcHm_v2.0_Chr2g0090651 Rosa chinensis HOM05D001384 ORTHO05D001215 9.6e-08 60.8 49 63.3
Nn8g39211 Nelumbo nucifera HOM05D001384 ORTHO05D001215 1.3e-07 60.5 51 58.8
HanXRQChr05g0138071 Helianthus annuus HOM05D001384 ORTHO05D001215 2.1e-07 59.7 50 62.0
Prupe.7G229500 Prunus persica HOM05D001384 ORTHO05D001215 2.8e-07 59.3 50 66.0
Gohir.A06G061600 Gossypium hirsutum HOM05D001384 ORTHO05D001215 3.7e-07 58.9 60 55.0
Peaxi162Scf00546g10017 Petunia axillaris HOM05D001384 ORTHO05D001215 3.7e-07 58.9 64 51.6
Lsat_1_v5_gn_8_95100 Lactuca sativa HOM05D001384 ORTHO05D001215 4.8e-07 58.5 53 62.3
MELO3C004554.2 Cucumis melo HOM05D001384 ORTHO05D001215 6.2e-07 58.2 49 65.3
Solyc10g011730.3 Solanum lycopersicum HOM05D001384 ORTHO05D001215 6.2e-07 58.2 58 50.0
COL.COLO4_35659 Corchorus olitorius HOM05D001384 ORTHO05D001215 8.1e-07 57.8 44 63.6
Lalb_Chr05g0222811 Lupinus albus HOM05D001384 ORTHO05D001215 8.1e-07 57.8 61 52.5
Haze_25702 Corylus avellana HOM05D001384 ORTHO05D001215 1.1e-06 57.4 56 57.1
EL10Ac3g05350 Beta vulgaris HOM05D001384 ORTHO05D001215 1.4e-06 57.0 48 58.3
CAN.G1710.1 Capsicum annuum HOM05D001384 ORTHO05D001215 1.4e-06 57.0 50 58.0
PGSC0003DMG400000317 Solanum tuberosum HOM05D001384 ORTHO05D001215 1.4e-06 57.0 50 60.0
Thecc.09G111900 Theobroma cacao HOM05D001384 ORTHO05D001215 1.4e-06 57.0 48 62.5
AT5G24105 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 1.8e-06 56.6 48 58.3
HanXRQChr09g0238501 Helianthus annuus HOM05D001384 ORTHO05D001215 1.8e-06 56.6 55 50.9
Lsat_1_v5_gn_7_38720 Lactuca sativa HOM05D001384 ORTHO05D001215 1.8e-06 56.6 76 44.7
THA.LOC109117149 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 1.8e-06 56.6 55 56.4
Nn2g11765 Nelumbo nucifera HOM05D001384 ORTHO05D001215 2.4e-06 56.2 51 52.9
Nitab4.5_0008261g0010 Nicotiana tabacum HOM05D001384 ORTHO05D001215 2.4e-06 56.2 54 48.1
THA.LOC104821373 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 2.4e-06 56.2 59 52.5
AL8G27900 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 3.1e-06 55.8 55 49.1
arahy.Tifrunner.gnm1.ann1.29029X Arachis hypogaea HOM05D001384 ORTHO05D001215 3.1e-06 55.8 64 48.4
BcaC04g23523 Brassica carinata HOM05D001384 ORTHO05D001215 3.1e-06 55.8 48 56.2
C09p07390 Brassica napus HOM05D001384 ORTHO05D001215 3.1e-06 55.8 48 56.2
BolC9t53653H Brassica oleracea HOM05D001384 ORTHO05D001215 3.1e-06 55.8 48 56.2
BraA09t36309Z Brassica rapa HOM05D001384 ORTHO05D001215 3.1e-06 55.8 48 56.2
Thhalv10015233m.g Eutrema salsugineum HOM05D001384 ORTHO05D001215 3.1e-06 55.8 55 49.1
Gohir.D05G024100 Gossypium hirsutum HOM05D001384 ORTHO05D001215 3.1e-06 55.8 49 61.2
Lsat_1_v5_gn_5_101580 Lactuca sativa HOM05D001384 ORTHO05D001215 3.1e-06 55.8 59 54.2
Potri.012G032000 Populus trichocarpa HOM05D001384 ORTHO05D001215 3.1e-06 55.8 46 63.0
TAR375G0324 Trochodendron aralioides HOM05D001384 ORTHO05D001215 3.1e-06 55.8 54 51.9
A09p06620 Brassica napus HOM05D001384 ORTHO05D001215 4.0e-06 55.5 48 56.2
Carub.0006s2183 Capsella rubella HOM05D001384 ORTHO05D001215 4.0e-06 55.5 48 56.2
CiPaw.11G124600 Carya illinoinensis HOM05D001384 ORTHO05D001215 4.0e-06 55.5 58 50.0
Gohir.A05G022600 Gossypium hirsutum HOM05D001384 ORTHO05D001215 4.0e-06 55.5 49 61.2
MD02G1048700 Malus domestica HOM05D001384 ORTHO05D001215 4.0e-06 55.5 49 63.3
MD15G1187000 Malus domestica HOM05D001384 ORTHO05D001215 4.0e-06 55.5 66 50.0
Manes.06G156900 Manihot esculenta HOM05D001384 ORTHO05D001215 4.0e-06 55.5 63 49.2
Peaxi162Scf00099g01816 Petunia axillaris HOM05D001384 ORTHO05D001215 4.0e-06 55.5 63 46.0
Hund09197 Selenicereus undatus HOM05D001384 ORTHO05D001215 4.0e-06 55.5 53 56.6
Aa31LG1G27700 Aethionema arabicum HOM05D001384 ORTHO05D001215 5.3e-06 55.1 55 50.9
arahy.Tifrunner.gnm1.ann1.B0IVK2 Arachis hypogaea HOM05D001384 ORTHO05D001215 5.3e-06 55.1 64 48.4
BcaC03g14439 Brassica carinata HOM05D001384 ORTHO05D001215 5.3e-06 55.1 55 50.9
C02p18530 Brassica napus HOM05D001384 ORTHO05D001215 5.3e-06 55.1 55 50.9
BolC2t07993H Brassica oleracea HOM05D001384 ORTHO05D001215 5.3e-06 55.1 55 50.9
Duzib205G1079 Durio zibethinus HOM05D001384 ORTHO05D001215 5.3e-06 55.1 41 63.4
CiPaw.03G233000 Carya illinoinensis HOM05D001384 ORTHO05D001215 6.9e-06 54.7 50 60.0
CsaV3_2G002300 Cucumis sativus L. HOM05D001384 ORTHO05D001215 6.9e-06 54.7 49 59.2
Duzib138G1328 Durio zibethinus HOM05D001384 ORTHO05D001215 6.9e-06 54.7 39 69.2
Glyma.14G161000 Glycine max HOM05D001384 ORTHO05D001215 6.9e-06 54.7 59 49.2
Gohir.D11G099700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 6.9e-06 54.7 39 69.2
Gorai.007G105900 Gossypium raimondii HOM05D001384 ORTHO05D001215 6.9e-06 54.7 39 69.2
Gorai.009G024200 Gossypium raimondii HOM05D001384 ORTHO05D001215 6.9e-06 54.7 49 59.2
Manes.14G018800 Manihot esculenta HOM05D001384 ORTHO05D001215 6.9e-06 54.7 58 53.4
Thecc.01G347500 Theobroma cacao HOM05D001384 ORTHO05D001215 6.9e-06 54.7 54 51.9
AT5G53250 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 9.0e-06 54.3 55 47.3
Carub.0008s1343 Capsella rubella HOM05D001384 ORTHO05D001215 9.0e-06 54.3 49 51.0
DCAR_028719 Daucus carota HOM05D001384 ORTHO05D001215 9.0e-06 54.3 54 53.7
Gohir.A10G068700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 9.0e-06 54.3 39 66.7
Lalb_Chr22g0352861 Lupinus albus HOM05D001384 ORTHO05D001215 9.0e-06 54.3 49 57.1
Potri.015G022600 Populus trichocarpa HOM05D001384 ORTHO05D001215 9.0e-06 54.3 48 56.2
Sopen10g005520 Solanum pennellii HOM05D001384 ORTHO05D001215 9.0e-06 54.3 54 48.1
PGSC0003DMG400019380 Solanum tuberosum HOM05D001384 ORTHO05D001215 9.0e-06 54.3 60 46.7
Thecc.03G192400 Theobroma cacao HOM05D001384 ORTHO05D001215 9.0e-06 54.3 48 54.2
Thecc.03G292300 Theobroma cacao HOM05D001384 ORTHO05D001215 9.0e-06 54.3 61 50.8


User provided reference genes

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