Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C03305 Eucalyptus grandis HOM05D006185 ORTHO05D007572 3.3e-112 408.3 193 100.0
Prupe.7G195700 Prunus persica HOM05D006185 ORTHO05D007572 4.5e-85 318.2 188 75.5
Potri.006G140000 Populus trichocarpa HOM05D006185 ORTHO05D007572 1.3e-84 316.6 189 78.3
TWI63G0883 Tripterygium wilfordii HOM05D006185 ORTHO05D007572 1.7e-84 316.2 186 76.9
Atru.chr7.1733 Acer truncatum HOM05D006185 ORTHO05D007572 2.2e-84 315.8 187 74.9
Manes.03G041800 Manihot esculenta HOM05D006185 ORTHO05D007572 2.9e-84 315.5 189 75.1
Cfa002967 Carpinus fangiana HOM05D006185 ORTHO05D007572 1.1e-83 313.5 187 76.5
CsaV3_1G041210 Cucumis sativus L. HOM05D006185 ORTHO05D007572 1.9e-83 312.8 188 76.1
ClCG03G014940 Citrullus lanatus HOM05D006185 ORTHO05D007572 4.2e-83 311.6 185 76.2
FAN26G0065 Fragaria x ananassa HOM05D006185 ORTHO05D007572 5.5e-83 311.2 189 74.1
FAN26G3397 Fragaria x ananassa HOM05D006185 ORTHO05D007572 5.5e-83 311.2 189 74.1
PGR044G1997 Punica granatum HOM05D006185 ORTHO05D007572 5.5e-83 311.2 191 74.9
Gohir.A05G034500 Gossypium hirsutum HOM05D006185 ORTHO05D007572 2.1e-82 309.3 188 76.1
RcHm_v2.0_Chr2g0095441 Rosa chinensis HOM05D006185 ORTHO05D007572 2.1e-82 309.3 188 74.5
CiPaw.03G203800 Carya illinoinensis HOM05D006185 ORTHO05D007572 3.5e-82 308.5 188 75.5
CANSAT56G1413 Cannabis sativa HOM05D006185 ORTHO05D007572 1.8e-81 306.2 189 70.9
Haze_26036 Corylus avellana HOM05D006185 ORTHO05D007572 1.8e-81 306.2 188 74.5
Gohir.D05G035900 Gossypium hirsutum HOM05D006185 ORTHO05D007572 1.8e-81 306.2 188 75.5
Gorai.009G036500 Gossypium raimondii HOM05D006185 ORTHO05D007572 1.8e-81 306.2 188 75.5
FvH4_1g09020 Fragaria vesca HOM05D006185 ORTHO05D007572 2.3e-81 305.8 186 74.2
FAN19G1369 Fragaria x ananassa HOM05D006185 ORTHO05D007572 2.3e-81 305.8 186 74.2
Duzib150G0101 Durio zibethinus HOM05D006185 ORTHO05D007572 3.0e-81 305.4 189 75.1
Cpa.g.sc28.15 Carica papaya HOM05D006185 ORTHO05D007572 8.7e-81 303.9 189 71.4
FAN23G1580 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.1e-80 303.5 189 73.0
CANSAT56G0026 Cannabis sativa HOM05D006185 ORTHO05D007572 1.9e-80 302.8 189 69.8
Ciclev10009607m.g Citrus clementina HOM05D006185 ORTHO05D007572 2.5e-80 302.4 188 72.9
Peaxi162Scf00928g00132 Petunia axillaris HOM05D006185 ORTHO05D007572 4.3e-80 301.6 189 70.9
CANSAT56G3530 Cannabis sativa HOM05D006185 ORTHO05D007572 5.7e-80 301.2 190 70.0
Dinv25540 Davidia involucrata HOM05D006185 ORTHO05D007572 5.7e-80 301.2 189 72.5
QL11p001224 Quercus lobata HOM05D006185 ORTHO05D007572 5.7e-80 301.2 187 72.7
CANSAT56G1917 Cannabis sativa HOM05D006185 ORTHO05D007572 7.4e-80 300.8 190 70.0
COL.COLO4_18072 Corchorus olitorius HOM05D006185 ORTHO05D007572 9.7e-80 300.4 188 72.9
MELO3C015534.2 Cucumis melo HOM05D006185 ORTHO05D007572 1.3e-79 300.1 204 69.1
Migut.L01579 Erythranthe guttata HOM05D006185 ORTHO05D007572 1.6e-79 299.7 189 70.9
Cc06_g12450 Coffea canephora HOM05D006185 ORTHO05D007572 2.2e-79 299.3 189 72.5
Oeu062247.1 Olea europaea HOM05D006185 ORTHO05D007572 3.7e-79 298.5 189 70.9
CAN.G1661.20 Capsicum annuum HOM05D006185 ORTHO05D007572 6.3e-79 297.7 189 70.9
EL10Ac8g19027 Beta vulgaris HOM05D006185 ORTHO05D007572 1.4e-78 296.6 188 72.3
ECA236G4868 Erigeron canadensis HOM05D006185 ORTHO05D007572 1.4e-78 296.6 190 71.6
MD02G1095400 Malus domestica HOM05D006185 ORTHO05D007572 1.4e-78 296.6 187 74.3
SGA_v2.0_scaffold296G47554 Striga asiatica HOM05D006185 ORTHO05D007572 1.4e-78 296.6 186 71.5
Sabra06G0109300 Salix brachista HOM05D006185 ORTHO05D007572 1.8e-78 296.2 218 67.4
Solyc12g009180.2 Solanum lycopersicum HOM05D006185 ORTHO05D007572 1.8e-78 296.2 187 72.2
Sopen12g004130 Solanum pennellii HOM05D006185 ORTHO05D007572 1.8e-78 296.2 187 72.2
Ca_09309_v3 Cicer arietinum L. HOM05D006185 ORTHO05D007572 2.4e-78 295.8 188 70.2
Gorai.010G090200 Gossypium raimondii HOM05D006185 ORTHO05D007572 2.4e-78 295.8 189 72.5
Phvul.003G129600 Phaseolus vulgaris HOM05D006185 ORTHO05D007572 3.1e-78 295.4 190 71.1
Thecc.09G074200 Theobroma cacao HOM05D006185 ORTHO05D007572 3.1e-78 295.4 189 73.0
Duzib187G0940 Durio zibethinus HOM05D006185 ORTHO05D007572 9.0e-78 293.9 189 72.0
Lsat_1_v5_gn_8_85701 Lactuca sativa HOM05D006185 ORTHO05D007572 1.2e-77 293.5 192 71.9
PGSC0003DMG400002903 Solanum tuberosum HOM05D006185 ORTHO05D007572 1.2e-77 293.5 187 71.1
VMungo1215G2404 Vigna mungo HOM05D006185 ORTHO05D007572 1.2e-77 293.5 190 70.5
Nitab4.5_0000073g0300 Nicotiana tabacum HOM05D006185 ORTHO05D007572 2.6e-77 292.4 188 69.7
Aa31LG7G3870 Aethionema arabicum HOM05D006185 ORTHO05D007572 3.4e-77 292.0 186 72.0
Ah.09g229250 Amaranthus hybridus HOM05D006185 ORTHO05D007572 3.4e-77 292.0 188 70.7
Psat7g057800 Pisum sativum HOM05D006185 ORTHO05D007572 3.4e-77 292.0 186 70.4
HanXRQChr04g0125931 Helianthus annuus HOM05D006185 ORTHO05D007572 4.5e-77 291.6 192 71.9
Lj7A688T82 Lonicera japonica HOM05D006185 ORTHO05D007572 4.5e-77 291.6 191 71.7
Nitab4.5_0004234g0030 Nicotiana tabacum HOM05D006185 ORTHO05D007572 7.7e-77 290.8 188 69.7
Hund26074 Selenicereus undatus HOM05D006185 ORTHO05D007572 1.3e-76 290.0 187 70.1
TAR624G1115 Trochodendron aralioides HOM05D006185 ORTHO05D007572 3.8e-76 288.5 190 72.6
SalBow5G0266 Salvia bowleyana HOM05D006185 ORTHO05D007572 1.9e-75 286.2 187 70.1
Sc06g0006920 Simmondsia chinensis HOM05D006185 ORTHO05D007572 2.5e-75 285.8 184 70.7
CSS0028340 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 3.2e-75 285.4 199 66.8
CSS0016181 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 4.2e-75 285.0 187 69.5
TPR.G12562 Trifolium pratense HOM05D006185 ORTHO05D007572 4.2e-75 285.0 188 68.6
GSVIVG01015050001 Vitis vinifera HOM05D006185 ORTHO05D007572 7.2e-75 284.3 189 68.8
Thhalv10008865m.g Eutrema salsugineum HOM05D006185 ORTHO05D007572 9.4e-75 283.9 187 70.6
Rhsim05G0005100 Rhododendron simsii HOM05D006185 ORTHO05D007572 9.4e-75 283.9 188 69.1
Carub.0001s1876 Capsella rubella HOM05D006185 ORTHO05D007572 2.1e-74 282.7 187 70.6
Glyma.13G111600 Glycine max HOM05D006185 ORTHO05D007572 2.1e-74 282.7 192 68.8
vmacro17122 Vaccinium macrocarpon HOM05D006185 ORTHO05D007572 2.7e-74 282.3 187 67.4
AL1G31710 Arabidopsis lyrata HOM05D006185 ORTHO05D007572 3.6e-74 282.0 187 70.6
DCAR_010492 Daucus carota HOM05D006185 ORTHO05D007572 4.6e-74 281.6 189 67.7
AT1G19130 Arabidopsis thaliana HOM05D006185 ORTHO05D007572 6.1e-74 281.2 187 70.6
Lj4g0025093 Lotus japonicus HOM05D006185 ORTHO05D007572 7.9e-74 280.8 189 67.2
Lalb_Chr07g0181271 Lupinus albus HOM05D006185 ORTHO05D007572 1.1e-72 276.9 188 66.5
Medtr4g125100 Medicago truncatula HOM05D006185 ORTHO05D007572 1.5e-72 276.6 189 67.2
THA.LOC104799837 Tarenaya hassleriana HOM05D006185 ORTHO05D007572 2.0e-72 276.2 189 65.6
Sc08g0009100 Simmondsia chinensis HOM05D006185 ORTHO05D007572 7.4e-72 274.2 185 65.9
unitig_699.g19263 Utricularia gibba HOM05D000454 ORTHO05D007572 7.4e-72 274.2 185 68.6
Eucgr.C00790 Eucalyptus grandis HOM05D006185 ORTHO05D007572 1.3e-71 273.5 190 67.9
MBI13_g00698_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.3e-71 273.5 195 68.7
A08p30000 Brassica napus HOM05D006185 ORTHO05D007572 2.8e-71 272.3 187 66.3
BraA08t34935Z Brassica rapa HOM05D006185 ORTHO05D007572 3.7e-71 271.9 187 66.3
Nn6g35681 Nelumbo nucifera HOM05D006185 ORTHO05D007572 3.7e-71 271.9 194 67.0
HanXRQChr06g0168681 Helianthus annuus HOM05D006185 ORTHO05D007572 6.3e-71 271.2 188 64.9
Hund26091 Selenicereus undatus HOM05D006185 ORTHO05D007572 6.3e-71 271.2 186 66.1
BcaC07g38980 Brassica carinata HOM05D006185 ORTHO05D007572 1.4e-70 270.0 187 65.8
C08p19220 Brassica napus HOM05D006185 ORTHO05D007572 4.1e-70 268.5 187 65.2
BolC8t49541H Brassica oleracea HOM05D006185 ORTHO05D007572 4.1e-70 268.5 187 65.2
BcaB03g12935 Brassica carinata HOM05D006185 ORTHO05D007572 2.0e-69 266.2 188 65.4
ECA236G2592 Erigeron canadensis HOM05D006185 ORTHO05D007572 4.5e-69 265.0 189 65.6
Actinidia30236 Actinidia chinensis HOM05D006185 ORTHO05D007572 2.9e-68 262.3 232 54.3
AUR62025276 Chenopodium quinoa HOM05D006185 ORTHO05D007572 2.5e-67 259.2 149 79.2
AUR62028278 Chenopodium quinoa HOM05D006185 ORTHO05D007572 3.2e-67 258.8 188 67.0
AUR62028304 Chenopodium quinoa HOM05D006185 ORTHO05D007572 5.5e-67 258.1 186 62.4
EL10Ac8g18996 Beta vulgaris HOM05D006185 ORTHO05D007572 1.6e-66 256.5 186 62.4
Nn5g27974 Nelumbo nucifera HOM05D006185 ORTHO05D007572 2.3e-65 252.7 194 62.4
AUR62025298 Chenopodium quinoa HOM05D006185 ORTHO05D007572 3.0e-65 252.3 186 61.3
Aqoxy7G04191 Aquilegia oxysepala HOM05D006185 ORTHO05D007572 8.8e-65 250.8 190 65.3
Lsat_1_v5_gn_8_85721 Lactuca sativa HOM05D006185 ORTHO05D007572 2.0e-64 249.6 190 61.6
Sed0027040 Sechium edule HOM05D006185 ORTHO05D007572 1.7e-63 246.5 148 74.3
Zm00001eb040490 Zea mays HOM05D006185 ORTHO05D007572 2.2e-63 246.1 185 65.9
HPP92_004362 Vanilla planifolia HOM05D006185 ORTHO05D007572 1.1e-62 243.8 190 64.2
ATR0006G060 Amborella trichopoda HOM05D006185 ORTHO05D007572 3.1e-62 242.3 188 62.2
Os08g0455800 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 5.3e-62 241.5 188 62.2
arahy.Tifrunner.gnm1.ann1.Y0H2IU Arachis hypogaea HOM05D006185 ORTHO05D007572 5.9e-61 238.0 187 59.4
arahy.Tifrunner.gnm1.ann1.85MSRM Arachis hypogaea HOM05D006185 ORTHO05D007572 7.7e-61 237.7 187 59.4
MBI19_g05291_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 2.2e-60 236.1 180 66.1
Gohir.A06G078100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 1.9e-59 233.0 189 61.4
SEGI_13235 Sequoiadendron giganteum HOM05D006185 ORTHO05D007572 9.4e-59 230.7 192 60.9
Lalb_Chr12g0200241 Lupinus albus HOM05D006185 ORTHO05D007572 1.2e-58 230.3 189 57.1
MBI13_g47248_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.0e-57 227.3 195 60.0
Os06g0198500 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 8.2e-55 217.6 190 56.8
Gohir.D06G077100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 2.4e-54 216.1 136 72.8
SMO340G0144 Selaginella moellendorffii HOM05D006185 ORTHO05D007572 4.1e-54 215.3 185 55.7
Pp3c9_22400 Physcomitrium patens HOM05D006185 ORTHO05D007572 4.5e-53 211.8 186 53.8
Mapoly0007s0060 Marchantia polymorpha HOM05D006185 ORTHO05D007572 5.9e-53 211.5 179 54.7
MSTRG.26479 Avicennia marina HOM05D006185 ORTHO05D007572 9.5e-35 151.0 111 59.5
FAN28G1197 Fragaria x ananassa HOM05D006185 ORTHO05D007572 9.5e-35 151.0 86 81.4
Ah.14g084750 Amaranthus hybridus HOM05D006185 ORTHO05D007572 1.8e-33 146.7 110 61.8
CARHR019730 Cardamine hirsuta HOM05D006185 ORTHO05D007572 1.0e-28 131.0 79 77.2
MBI14_g46913_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 6.1e-26 121.7 98 61.2
Eucgr.C00789 Eucalyptus grandis HOM05D006185 ORTHO05D007572 5.4e-22 108.6 95 56.8
Os06g0198600 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 4.6e-21 105.5 121 48.8
BcaB02g10882 Brassica carinata HOM05D006185 ORTHO05D007572 1.1e-09 67.8 76 43.4


User provided reference genes

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