Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.1e-62 243.4 157 100.0
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 3.3e-62 241.9 157 99.4
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 3.7e-61 238.4 128 99.2
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 1.1e-52 210.3 126 88.9
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 3.1e-52 208.8 122 89.3
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 5.3e-52 208.0 122 91.0
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 5.3e-52 208.0 122 91.0
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 9.1e-52 207.2 126 87.3
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 9.1e-52 207.2 126 87.3
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 9.1e-52 207.2 126 87.3
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 9.1e-52 207.2 122 89.3
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 2.6e-51 205.7 121 89.3
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 4.5e-51 204.9 121 90.9
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 4.5e-51 204.9 120 91.7
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 7.7e-51 204.1 121 88.4
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 1.0e-50 203.8 122 89.3
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 1.0e-50 203.8 126 87.3
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 1.3e-50 203.4 121 90.1
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 1.7e-50 203.0 121 88.4
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 1.7e-50 203.0 126 84.9
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 2.2e-50 202.6 124 87.9
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 2.2e-50 202.6 121 87.6
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 2.2e-50 202.6 124 87.1
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 2.9e-50 202.2 121 90.1
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 3.8e-50 201.8 123 87.0
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 5.0e-50 201.4 125 86.4
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 8.5e-50 200.7 120 88.3
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 1.1e-49 200.3 121 86.8
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 1.4e-49 199.9 122 86.1
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 1.9e-49 199.5 121 86.0
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 1.9e-49 199.5 121 89.3
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 1.9e-49 199.5 121 87.6
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 2.5e-49 199.1 122 87.7
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 2.5e-49 199.1 122 87.7
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 2.5e-49 199.1 121 86.8
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 3.2e-49 198.7 121 86.8
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 4.2e-49 198.4 120 88.3
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 4.2e-49 198.4 120 88.3
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 4.2e-49 198.4 122 86.1
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 5.5e-49 198.0 150 84.7
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 5.5e-49 198.0 122 86.9
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 5.5e-49 198.0 121 88.4
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 5.5e-49 198.0 121 87.6
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 7.2e-49 197.6 128 82.8
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 9.4e-49 197.2 121 87.6
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 9.4e-49 197.2 120 86.7
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 2.7e-48 195.7 121 84.3
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 3.6e-48 195.3 122 85.2
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 3.6e-48 195.3 122 85.2
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 3.6e-48 195.3 120 85.8
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 1.0e-47 193.7 122 84.4
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 1.0e-47 193.7 126 81.7
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 3.9e-47 191.8 122 82.8
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 6.7e-47 191.0 126 80.2
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 6.7e-47 191.0 128 78.9
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 1.5e-46 189.9 133 80.5
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 2.6e-46 189.1 124 78.2
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 3.3e-46 188.7 121 81.0
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 4.4e-46 188.3 122 81.1
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 4.4e-46 188.3 122 81.1
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 5.7e-46 188.0 122 81.1
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 7.4e-46 187.6 122 79.5
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 7.4e-46 187.6 121 82.6
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 9.7e-46 187.2 120 80.0
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 9.7e-46 187.2 122 77.9
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 9.7e-46 187.2 120 82.5
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 1.3e-45 186.8 122 78.7
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 1.7e-45 186.4 119 82.4
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 2.2e-45 186.0 122 79.5
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 3.7e-45 185.3 122 77.9
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 3.7e-45 185.3 120 80.8
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 3.7e-45 185.3 121 79.3
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 4.8e-45 184.9 120 78.3
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 6.3e-45 184.5 120 80.0
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 6.3e-45 184.5 127 80.3
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 8.2e-45 184.1 128 76.6
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 8.2e-45 184.1 122 79.5
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 1.1e-44 183.7 124 78.2
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 1.4e-44 183.3 122 76.2
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 2.4e-44 182.6 122 77.0
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 2.4e-44 182.6 120 80.8
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 3.1e-44 182.2 117 80.3
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 5.3e-44 181.4 122 76.2
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 5.3e-44 181.4 122 76.2
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 5.3e-44 181.4 122 76.2
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 5.3e-44 181.4 120 80.0
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 6.9e-44 181.0 122 77.0
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 6.9e-44 181.0 122 76.2
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 9.1e-44 180.6 120 80.0
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 1.2e-43 180.3 125 75.2
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 1.5e-43 179.9 120 76.7
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 1.5e-43 179.9 121 76.9
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 1.5e-43 179.9 127 79.5
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 3.4e-43 178.7 126 74.6
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 3.4e-43 178.7 126 74.6
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 7.7e-43 177.6 120 79.2
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 1.0e-42 177.2 127 74.8
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 1.0e-42 177.2 126 74.6
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.0e-42 177.2 126 74.6
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.0e-42 177.2 126 73.8
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 2.2e-42 176.0 127 73.2
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 5.0e-42 174.9 122 76.2
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 6.5e-42 174.5 120 75.8
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 1.1e-41 173.7 129 72.1
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 1.1e-41 173.7 116 78.4
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 3.2e-41 172.2 128 68.8
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 9.4e-41 170.6 127 75.6
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.2e-40 170.2 94 94.7
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 1.6e-40 169.9 121 70.2
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 2.3e-39 166.0 201 52.7
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 1.1e-38 163.7 193 53.9
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 2.0e-38 162.9 126 74.6
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 1.7e-37 159.8 128 64.1
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 4.8e-37 158.3 121 69.4
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 4.8e-37 158.3 121 66.1
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 6.3e-37 157.9 121 71.9
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 8.2e-37 157.5 117 70.9
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 1.4e-36 156.8 105 81.0
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 1.8e-36 156.4 108 77.8
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 1.2e-35 153.7 98 82.7
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 1.6e-35 153.3 98 83.7
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 2.9e-34 149.1 121 65.3
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 9.4e-33 144.1 96 81.2
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 9.4e-33 144.1 117 63.2
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 1.2e-32 143.7 120 62.5
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 6.1e-32 141.4 122 59.0
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 3.3e-30 135.6 100 74.0
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 3.3e-30 135.6 121 57.9
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 2.4e-28 129.4 121 54.5
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 3.1e-28 129.0 120 56.7
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.0e-26 124.0 101 71.3
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 6.5e-26 121.3 102 72.5
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 1.2e-22 110.5 110 58.2
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 2.0e-22 109.8 91 62.6
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 2.0e-22 109.8 91 62.6
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 3.8e-18 95.5 70 71.4
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 1.6e-11 73.6 49 69.4
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 4.5e-11 72.0 71 62.0
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 7.8e-11 71.2 84 56.0
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 7.8e-11 71.2 84 56.0
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 1.6e-08 63.5 52 63.5


User provided reference genes

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