Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 0.0e+00 1076.2 532 100.0
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 2.3e-285 984.9 532 90.6
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 2.6e-284 981.5 533 90.1
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 7.5e-284 979.9 532 90.0
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 9.9e-284 979.5 532 89.8
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 4.9e-283 977.2 531 89.6
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 4.9e-283 977.2 532 89.3
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 6.4e-283 976.9 533 89.7
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 4.1e-282 974.2 532 89.3
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 9.2e-282 973.0 534 89.1
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 9.2e-282 973.0 532 88.9
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 1.6e-281 972.2 531 89.3
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.6e-281 972.2 532 88.7
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 2.1e-281 971.8 532 88.7
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 1.0e-280 969.5 532 88.7
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 3.9e-280 967.6 531 88.5
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 3.9e-280 967.6 532 88.5
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 8.6e-280 966.5 530 89.4
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 8.6e-280 966.5 530 89.4
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 8.6e-280 966.5 532 88.7
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 8.6e-280 966.5 532 88.3
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 2.1e-278 961.8 533 88.2
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 8.1e-278 959.9 532 88.2
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 1.1e-277 959.5 533 88.7
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 4.0e-277 957.6 522 89.1
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 4.0e-277 957.6 532 87.4
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 1.5e-276 955.7 504 91.3
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 2.0e-276 955.3 532 87.4
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 2.0e-276 955.3 504 91.5
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 4.4e-276 954.1 533 88.4
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 5.8e-276 953.7 569 82.8
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 5.8e-276 953.7 531 87.8
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 7.6e-276 953.4 533 87.2
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 1.7e-275 952.2 532 87.8
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 1.7e-275 952.2 531 87.8
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 4.9e-275 950.7 500 91.2
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 1.1e-274 949.5 532 87.0
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 1.4e-274 949.1 532 87.2
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 2.4e-274 948.3 532 87.4
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 3.2e-274 948.0 530 87.0
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 3.2e-274 948.0 535 86.5
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 4.2e-274 947.6 504 90.7
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 4.2e-274 947.6 504 90.7
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 5.4e-274 947.2 532 86.1
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 9.2e-274 946.4 503 91.3
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 9.2e-274 946.4 530 86.8
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 9.2e-274 946.4 535 86.5
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 2.7e-273 944.9 530 87.4
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 2.7e-273 944.9 532 85.9
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 3.5e-273 944.5 532 86.5
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 7.8e-273 943.3 532 87.8
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 1.0e-272 943.0 519 88.8
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 1.0e-272 943.0 532 86.7
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.7e-272 942.2 535 85.8
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 8.7e-272 939.9 532 86.5
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 8.7e-272 939.9 532 86.7
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 8.7e-272 939.9 532 86.5
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 8.7e-272 939.9 532 87.4
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 1.1e-271 939.5 532 86.7
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 1.1e-271 939.5 532 86.7
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 1.9e-271 938.7 535 85.6
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 4.3e-271 937.6 509 88.8
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 1.6e-270 935.6 532 85.7
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 1.6e-270 935.6 507 88.8
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 2.1e-270 935.3 532 86.7
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 2.8e-270 934.9 501 88.8
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 2.8e-270 934.9 504 90.3
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 4.7e-270 934.1 532 84.8
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 4.7e-270 934.1 532 84.8
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 8.1e-270 933.3 565 81.9
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 8.1e-270 933.3 532 86.1
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 1.1e-269 932.9 532 85.3
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 1.1e-269 932.9 532 84.6
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 3.1e-269 931.4 530 86.4
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 4.0e-269 931.0 530 84.5
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 9.0e-269 929.9 532 84.6
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 1.5e-268 929.1 532 85.5
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 2.0e-268 928.7 523 87.6
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 7.6e-268 926.8 541 84.1
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 9.9e-268 926.4 504 88.7
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.3e-267 926.0 535 84.1
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 4.9e-267 924.1 532 84.2
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 4.9e-267 924.1 517 86.1
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 6.4e-267 923.7 530 85.7
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 8.4e-267 923.3 534 84.3
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 8.4e-267 923.3 532 83.6
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 9.3e-266 919.8 532 84.4
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 1.6e-265 919.1 530 85.5
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.6e-265 919.1 534 84.3
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 6.0e-265 917.1 533 83.9
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 6.0e-265 917.1 504 87.9
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 1.3e-264 916.0 532 85.2
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.7e-264 915.6 556 80.9
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 2.3e-264 915.2 532 83.6
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 3.9e-264 914.4 499 88.0
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 6.6e-264 913.7 521 86.2
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 4.8e-262 907.5 532 82.9
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 6.2e-262 907.1 500 87.0
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 3.8e-259 897.9 543 81.2
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 8.4e-259 896.7 533 82.9
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 8.4e-259 896.7 533 82.9
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 3.9e-256 887.9 518 82.0
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.5e-255 885.9 518 80.5
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 4.0e-253 877.9 526 79.7
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 3.2e-250 868.2 533 76.9
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 1.8e-245 852.4 501 82.6
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 6.9e-245 850.5 533 79.0
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 1.7e-243 845.9 572 74.0
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 6.5e-243 844.0 533 75.4
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 7.7e-236 820.5 509 76.0
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.0e-232 810.1 473 86.0
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 1.0e-232 810.1 525 74.9
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 7.4e-231 803.9 501 76.2
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 3.7e-230 801.6 508 73.4
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 6.5e-227 790.8 528 71.2
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 7.9e-225 783.9 528 70.5
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 3.0e-224 781.9 528 70.6
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.7e-222 776.2 532 75.0
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 4.8e-222 774.6 532 75.4
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 4.5e-220 768.1 527 68.7
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 1.5e-218 763.1 527 71.0
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 1.8e-216 756.1 412 88.8
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 1.3e-214 750.0 532 73.1
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.4e-205 719.9 532 70.7
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 5.0e-203 711.4 491 67.0
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 5.7e-199 698.0 379 90.0
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 9.8e-191 670.6 545 60.4
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 6.3e-190 667.9 504 64.7
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 1.3e-187 660.2 419 80.4
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 2.8e-185 652.5 346 92.8
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 7.8e-180 634.4 344 90.1
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 7.3e-162 574.7 532 57.7
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 1.9e-157 560.1 355 78.9
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 5.6e-154 548.5 491 54.2
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 3.8e-150 535.8 301 84.7
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 1.9e-149 533.5 301 85.0
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 1.5e-143 513.8 276 91.3
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.7e-142 510.4 356 75.3
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 6.2e-137 491.9 510 50.4
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 7.6e-127 458.4 502 48.4
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 2.1e-124 450.3 285 80.7
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 2.8e-97 360.1 205 82.9
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 3.6e-84 316.6 409 41.1
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 1.3e-65 255.0 325 46.8
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 3.7e-65 253.4 413 41.4
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 2.1e-47 194.5 126 73.8
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 1.7e-41 174.9 93 89.2
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 7.9e-31 139.4 79 79.7
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 1.9e-29 134.8 99 67.7
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 1.4e-24 118.6 68 79.4
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 3.0e-22 110.9 87 64.4
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 7.9e-15 86.3 72 61.1
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 3.3e-13 80.9 125 43.2
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 2.4e-11 74.7 48 66.7
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 3.2e-08 64.3 35 80.0


User provided reference genes

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