Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02661 Eucalyptus grandis HOM05D004632 ORTHO05D005556 0.0e+00 1092.8 773 100.0
PGR042G1415 Punica granatum HOM05D004632 ORTHO05D005556 1.8e-201 706.8 688 82.0
GSVIVG01035887001 Vitis vinifera HOM05D004632 ORTHO05D005556 4.6e-189 665.6 689 79.5
Dinv34967 Davidia involucrata HOM05D004632 ORTHO05D005556 3.1e-185 652.9 689 78.4
CSS0008139 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 6.0e-181 638.6 688 77.2
Prupe.1G392800 Prunus persica HOM05D004632 ORTHO05D005556 1.3e-180 637.5 689 76.6
Potri.018G020200 Populus trichocarpa HOM05D004632 ORTHO05D005556 7.3e-179 631.7 689 76.1
Rhsim02G0214000 Rhododendron simsii HOM05D004632 ORTHO05D005556 2.8e-178 629.8 688 76.7
CsaV3_4G036640 Cucumis sativus L. HOM05D004632 ORTHO05D005556 9.0e-177 624.8 689 75.8
MELO3C016968.2 Cucumis melo HOM05D004632 ORTHO05D005556 1.2e-176 624.4 689 76.1
Sed0004025 Sechium edule HOM05D004632 ORTHO05D005556 2.6e-176 623.2 689 76.2
Potri.006G263400 Populus trichocarpa HOM05D004632 ORTHO05D005556 1.7e-175 620.5 689 75.3
CiPaw.07G229300 Carya illinoinensis HOM05D004632 ORTHO05D005556 6.4e-175 618.6 689 77.1
Cc09_g08590 Coffea canephora HOM05D004632 ORTHO05D005556 3.2e-174 616.3 689 76.2
Atru.chr7.2537 Acer truncatum HOM05D004632 ORTHO05D005556 4.2e-174 615.9 689 76.3
Manes.16G128700 Manihot esculenta HOM05D004632 ORTHO05D005556 7.1e-174 615.1 690 75.4
RcHm_v2.0_Chr6g0299541 Rosa chinensis HOM05D004632 ORTHO05D005556 7.1e-174 615.1 689 75.5
EL10Ac1g00704 Beta vulgaris HOM05D004632 ORTHO05D005556 1.2e-173 614.4 472 68.9
MD00G1143300 Malus domestica HOM05D004632 ORTHO05D005556 6.0e-173 612.1 477 68.1
VMungo1309G0882 Vigna mungo HOM05D004632 ORTHO05D005556 6.0e-173 612.1 689 75.0
Lalb_Chr23g0268241 Lupinus albus HOM05D004632 ORTHO05D005556 1.3e-172 610.9 689 75.0
Ca_15774_v3 Cicer arietinum L. HOM05D004632 ORTHO05D005556 3.0e-172 609.8 472 67.6
arahy.Tifrunner.gnm1.ann1.21LKMJ Arachis hypogaea HOM05D004632 ORTHO05D005556 8.7e-172 608.2 472 67.6
Ciclev10007613m.g Citrus clementina HOM05D004632 ORTHO05D005556 8.7e-172 608.2 693 75.5
Phvul.009G087600 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 8.7e-172 608.2 690 74.8
arahy.Tifrunner.gnm1.ann1.8PBG0P Arachis hypogaea HOM05D004632 ORTHO05D005556 1.1e-171 607.8 689 75.0
Nn8g39852 Nelumbo nucifera HOM05D004632 ORTHO05D005556 1.5e-171 607.4 689 75.2
Sabra06G0205900 Salix brachista HOM05D004632 ORTHO05D005556 4.3e-171 605.9 689 74.7
Glyma.06G062300 Glycine max HOM05D004632 ORTHO05D005556 5.6e-171 605.5 689 74.6
Lj1g0022186 Lotus japonicus HOM05D004632 ORTHO05D005556 5.6e-171 605.5 689 74.9
CAN.G199.61 Capsicum annuum HOM05D004632 ORTHO05D005556 7.3e-171 605.1 688 73.8
Actinidia22297 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.6e-170 604.0 690 75.1
Glyma.04G061600 Glycine max HOM05D004632 ORTHO05D005556 2.1e-170 603.6 473 67.4
ClCG05G016370 Citrullus lanatus HOM05D004632 ORTHO05D005556 2.8e-170 603.2 696 74.6
TWI32G0830 Tripterygium wilfordii HOM05D004632 ORTHO05D005556 6.2e-170 602.1 696 73.6
Peaxi162Scf00430g00519 Petunia axillaris HOM05D004632 ORTHO05D005556 8.1e-170 601.7 690 74.5
Psat5g032640 Pisum sativum HOM05D004632 ORTHO05D005556 8.1e-170 601.7 472 66.5
Ah.05g177560 Amaranthus hybridus HOM05D004632 ORTHO05D005556 5.3e-169 599.0 481 66.1
MSTRG.9370 Avicennia marina HOM05D004632 ORTHO05D005556 5.3e-169 599.0 689 73.9
FvH4_2g41020 Fragaria vesca HOM05D004632 ORTHO05D005556 9.0e-169 598.2 689 74.2
Duzib168G2284 Durio zibethinus HOM05D004632 ORTHO05D005556 1.5e-168 597.4 686 74.8
PSO782G2171 Papaver somniferum HOM05D004632 ORTHO05D005556 1.5e-168 597.4 689 74.0
Medtr3g106080 Medicago truncatula HOM05D004632 ORTHO05D005556 4.5e-168 595.9 689 73.9
Sopen06g024220 Solanum pennellii HOM05D004632 ORTHO05D005556 4.5e-168 595.9 688 73.5
FAN20G0152 Fragaria x ananassa HOM05D004632 ORTHO05D005556 7.6e-168 595.1 703 72.8
FAN20G1191 Fragaria x ananassa HOM05D004632 ORTHO05D005556 2.2e-167 593.6 704 72.9
Solyc06g065700.3 Solanum lycopersicum HOM05D004632 ORTHO05D005556 2.9e-167 593.2 688 73.3
PSO063G4867 Papaver somniferum HOM05D004632 ORTHO05D005556 3.8e-167 592.8 690 73.8
TPR.G1835 Trifolium pratense HOM05D004632 ORTHO05D005556 6.4e-167 592.0 472 66.3
Aqoxy7G03810 Aquilegia oxysepala HOM05D004632 ORTHO05D005556 8.4e-167 591.7 472 68.2
HanXRQChr03g0084861 Helianthus annuus HOM05D004632 ORTHO05D005556 2.4e-166 590.1 686 73.6
Cpa.g.sc127.22 Carica papaya HOM05D004632 ORTHO05D005556 5.4e-166 589.0 472 65.9
FAN27G1200 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.2e-165 587.8 472 66.1
Lsat_1_v5_gn_6_77900 Lactuca sativa HOM05D004632 ORTHO05D005556 1.5e-163 580.9 688 75.1
MBI15_g05236_MAGBIO Magnolia biondii HOM05D004632 ORTHO05D005556 3.3e-163 579.7 472 65.5
ECA240G3507 Erigeron canadensis HOM05D004632 ORTHO05D005556 7.4e-163 578.6 685 73.3
Lj7A732T26 Lonicera japonica HOM05D004632 ORTHO05D005556 2.8e-162 576.6 660 71.7
Lsat_1_v5_gn_7_4261 Lactuca sativa HOM05D004632 ORTHO05D005556 4.8e-162 575.9 471 67.7
DCAR_015265 Daucus carota HOM05D004632 ORTHO05D005556 4.0e-161 572.8 478 65.1
Migut.N00603 Erythranthe guttata HOM05D004632 ORTHO05D005556 2.2e-159 567.0 689 72.3
ATR0739G094 Amborella trichopoda HOM05D004632 ORTHO05D005556 1.2e-157 561.2 689 72.4
SGA_v2.0_scaffold40G15680 Striga asiatica HOM05D004632 ORTHO05D005556 1.2e-157 561.2 728 70.1
BcaB04g19812 Brassica carinata HOM05D004632 ORTHO05D005556 3.5e-157 559.7 477 63.5
A09p06280 Brassica napus HOM05D004632 ORTHO05D005556 6.0e-157 558.9 471 64.3
BraA09t36273Z Brassica rapa HOM05D004632 ORTHO05D005556 6.0e-157 558.9 471 64.3
BolC9t53613H Brassica oleracea HOM05D004632 ORTHO05D005556 7.9e-157 558.5 471 64.3
Gohir.A05G058900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.1e-155 554.7 469 64.4
C09p06950 Brassica napus HOM05D004632 ORTHO05D005556 9.6e-155 551.6 468 64.3
BcaC04g23574 Brassica carinata HOM05D004632 ORTHO05D005556 1.3e-154 551.2 468 64.3
Gorai.001G037500 Gossypium raimondii HOM05D004632 ORTHO05D005556 1.6e-154 550.8 686 72.3
THA.LOC104814991 Tarenaya hassleriana HOM05D004632 ORTHO05D005556 2.8e-154 550.1 477 62.7
HPP92_014401 Vanilla planifolia HOM05D004632 ORTHO05D005556 2.0e-152 543.9 689 70.5
Gohir.A07G031900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 2.6e-152 543.5 469 63.5
Gohir.D07G035600 Gossypium hirsutum HOM05D004632 ORTHO05D005556 2.6e-152 543.5 686 71.7
Os06g0649500 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 1.3e-151 541.2 473 61.7
Glyma.17G222200 Glycine max HOM05D004632 ORTHO05D005556 1.2e-149 534.6 689 69.1
MSTRG.4644 Avicennia marina HOM05D004632 ORTHO05D005556 1.6e-149 534.3 694 70.6
CSS0046974 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 4.6e-149 532.7 621 74.9
Phvul.001G042300 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 3.0e-148 530.0 689 69.2
AUR62023356 Chenopodium quinoa HOM05D004632 ORTHO05D005556 3.9e-148 529.6 472 61.9
VMungo0647G2075 Vigna mungo HOM05D004632 ORTHO05D005556 3.9e-148 529.6 471 59.4
AT5G25150 Arabidopsis thaliana HOM05D004632 ORTHO05D005556 8.7e-148 528.5 478 61.9
BolC2t12041H Brassica oleracea HOM05D004632 ORTHO05D005556 8.7e-148 528.5 479 61.6
Sp2g22380 Schrenkiella parvula HOM05D004632 ORTHO05D005556 8.7e-148 528.5 472 61.7
AUR62013801 Chenopodium quinoa HOM05D004632 ORTHO05D005556 1.5e-147 527.7 402 68.4
Thhalv10003767m.g Eutrema salsugineum HOM05D004632 ORTHO05D005556 1.6e-146 524.2 467 63.0
Carub.0006s2297 Capsella rubella HOM05D004632 ORTHO05D005556 1.1e-145 521.5 474 61.4
C02p59830 Brassica napus HOM05D004632 ORTHO05D005556 4.1e-145 519.6 479 60.8
Thecc.09G016800 Theobroma cacao HOM05D004632 ORTHO05D005556 4.1e-145 519.6 576 80.2
Nitab4.5_0007182g0050 Nicotiana tabacum HOM05D004632 ORTHO05D005556 9.0e-145 518.5 471 60.7
CDE05G3472 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 7.7e-144 515.4 469 57.6
CARHR188340 Cardamine hirsuta HOM05D004632 ORTHO05D005556 1.3e-143 514.6 481 59.5
Hund27424 Selenicereus undatus HOM05D004632 ORTHO05D005556 1.7e-143 514.2 592 52.4
Aa31LG11G4400 Aethionema arabicum HOM05D004632 ORTHO05D005556 1.4e-142 511.1 477 59.1
A02p39940 Brassica napus HOM05D004632 ORTHO05D005556 1.8e-140 504.2 479 59.5
Haze_21427 Corylus avellana HOM05D004632 ORTHO05D005556 2.3e-140 503.8 472 60.0
BraA02t08956Z Brassica rapa HOM05D004632 ORTHO05D005556 3.0e-140 503.4 479 59.3
vmacro11252 Vaccinium macrocarpon HOM05D004632 ORTHO05D005556 1.3e-138 498.0 359 72.4
Nitab4.5_0003976g0020 Nicotiana tabacum HOM05D004632 ORTHO05D005556 2.0e-136 490.7 745 60.7
TAR626G1191 Trochodendron aralioides HOM05D004632 ORTHO05D005556 2.0e-136 490.7 570 78.9
SalBow1G2567 Salvia bowleyana HOM05D004632 ORTHO05D005556 2.6e-136 490.3 405 65.4
AL6G36810 Arabidopsis lyrata HOM05D004632 ORTHO05D005556 1.1e-131 474.9 460 59.3
BcaB07g29936 Brassica carinata HOM05D004632 ORTHO05D005556 3.1e-129 466.8 468 55.8
Zm00001eb388650 Zea mays HOM05D004632 ORTHO05D005556 1.6e-125 454.5 359 65.5
BcaC03g17924 Brassica carinata HOM05D004632 ORTHO05D005556 8.8e-116 422.2 479 53.0
Mapoly0009s0169 Marchantia polymorpha HOM05D004632 ORTHO05D005556 4.8e-114 416.4 484 49.2
Oeu061252.3 Olea europaea HOM05D004632 ORTHO05D005556 6.3e-114 416.0 726 61.2
TAR625G0176 Trochodendron aralioides HOM05D004632 ORTHO05D005556 1.4e-113 414.8 356 65.4
Gohir.D05G060932 Gossypium hirsutum HOM05D004632 ORTHO05D005556 5.3e-113 412.9 414 56.8
Pp3c12_23330 Physcomitrium patens HOM05D004632 ORTHO05D005556 8.5e-111 405.6 476 49.4
SMO118G0104 Selaginella moellendorffii HOM05D004632 ORTHO05D005556 4.4e-99 366.7 400 51.2
MD15G1039100 Malus domestica HOM05D004632 ORTHO05D005556 9.8e-99 365.5 333 61.0
CSS0042581 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 4.1e-97 360.1 292 68.8
Oeu013659.1 Olea europaea HOM05D004632 ORTHO05D005556 1.7e-95 354.8 279 67.4
Actinidia13189 Actinidia chinensis HOM05D004632 ORTHO05D005556 3.0e-71 274.2 690 54.9
Zm00001eb259920 Zea mays HOM05D004632 ORTHO05D005556 3.2e-65 254.2 194 68.6
MD15G1039000 Malus domestica HOM05D004632 ORTHO05D005556 4.6e-56 223.8 149 76.5
COL.COLO4_18941 Corchorus olitorius HOM05D004632 ORTHO05D005556 1.1e-54 219.2 233 56.7
PRCOL_00000651 Prasinoderma coloniale HOM05D004632 ORTHO05D005556 6.9e-52 209.9 481 30.4
Sed0017212 Sechium edule HOM05D004632 ORTHO05D005556 4.5e-51 207.2 344 39.5
MCO11G306 Micromonas commoda HOM05D004632 ORTHO05D005556 1.4e-49 202.2 504 30.0
VMungo1309G1582 Vigna mungo HOM05D004632 ORTHO05D005556 3.2e-49 201.1 207 58.0
MCO11G293 Micromonas commoda HOM05D004632 ORTHO05D005556 2.1e-48 198.4 550 28.7
CBR_g41144 Chara braunii HOM05D004632 ORTHO05D005556 1.1e-44 186.0 205 46.8
SEGI_28232 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.8e-44 185.3 157 65.6
SEGI_13945 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 2.4e-44 184.9 180 53.9
Manes.03G009801 Manihot esculenta HOM05D004632 ORTHO05D005556 2.0e-43 181.8 296 44.9
CDE05G1210 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 1.1e-41 176.0 142 65.5
Dinv40981 Davidia involucrata HOM05D004632 ORTHO05D005556 3.9e-39 167.5 279 43.7
CDE05G3588 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 4.8e-37 160.6 130 59.2
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 4.1e-36 157.5 154 54.5
Actinidia10511 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.9e-33 148.7 143 58.7
CBR_g39739 Chara braunii HOM05D004632 ORTHO05D005556 2.7e-32 144.8 294 37.1
Hma1.2p1_0059F.1_g032640 Hydrangea macrophylla HOM05D004632 ORTHO05D005556 3.5e-32 144.4 297 88.2
PSO541G0014 Papaver somniferum HOM05D004632 ORTHO05D005556 3.8e-26 124.4 102 62.7
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 1.5e-19 102.4 537 23.8
Sabra18G0022500 Salix brachista HOM05D004632 ORTHO05D005556 5.9e-19 100.5 289 33.9
Glyma.14G103500 Glycine max HOM05D004632 ORTHO05D005556 8.5e-18 96.7 129 42.6
SEGI_29407 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 5.1e-15 87.4 69 55.1
Actinidia09762 Actinidia chinensis HOM05D004632 ORTHO05D005556 3.3e-14 84.7 66 66.7
Cfa022837 Carpinus fangiana HOM05D004632 ORTHO05D005556 2.2e-13 82.0 510 22.7
SEGI_30848 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 2.8e-13 81.6 73 58.9
Actinidia10512 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.2e-11 76.3 98 45.9
FAN15G3250 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.5e-11 75.9 56 73.2
MD15G1038900 Malus domestica HOM05D004632 ORTHO05D005556 1.0e-10 73.2 56 69.6
Haze_26425 Corylus avellana HOM05D004632 ORTHO05D005556 3.2e-09 68.2 182 29.7
Glyma.14G103600 Glycine max HOM05D004632 ORTHO05D005556 2.1e-08 65.5 57 61.4
SEGI_21073 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.4e-07 62.8 56 60.7
Os07g0205200 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 4.0e-07 61.2 98 38.8


User provided reference genes

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