Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02512 Eucalyptus grandis HOM05D003517 ORTHO05D009798 1.4e-125 453.0 224 100.0
RcHm_v2.0_MTg0499001 Rosa chinensis HOM05D003517 ORTHO05D009798 5.2e-109 397.9 226 88.5
Lj5g0015285 Lotus japonicus HOM05D003517 ORTHO05D009798 2.4e-106 389.0 227 87.7
LjContig00439g0008559 Lotus japonicus HOM05D003517 ORTHO05D009798 2.4e-106 389.0 227 87.7
Nn1g10026 Nelumbo nucifera HOM05D003517 ORTHO05D009798 7.7e-105 384.0 226 86.3
Nn1g10028 Nelumbo nucifera HOM05D003517 ORTHO05D009798 7.7e-105 384.0 226 86.3
Medtr0082s0030 Medicago truncatula HOM05D003517 ORTHO05D009798 2.9e-104 382.1 230 86.1
Ca_14831_v3 Cicer arietinum L. HOM05D003517 ORTHO05D009798 3.8e-104 381.7 221 88.2
Lj2P1236T76 Lonicera japonica HOM05D003517 ORTHO05D009798 6.5e-104 380.9 229 85.2
Lalb_Chr00c24g0406771 Lupinus albus HOM05D003517 ORTHO05D009798 2.5e-103 379.0 227 86.3
VMungo0985G0017 Vigna mungo HOM05D003517 ORTHO05D009798 1.0e-101 373.6 227 85.5
CAN.G110.13 Capsicum annuum HOM05D003517 ORTHO05D009798 4.4e-100 368.2 224 83.5
MBI05_g23322_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009798 1.7e-99 366.3 224 83.0
Solyc00g021640.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 2.2e-99 365.9 224 83.0
CsaV3_UNG208660 Cucumis sativus L. HOM05D003517 ORTHO05D009798 3.7e-99 365.2 226 82.3
arahy.Tifrunner.gnm1.ann1.PT41Y0 Arachis hypogaea HOM05D003517 ORTHO05D009798 1.4e-98 363.2 227 83.7
DCAR_032455 Daucus carota HOM05D003517 ORTHO05D009798 1.3e-96 356.7 229 81.7
Thhalv10023100m.g Eutrema salsugineum HOM05D003517 ORTHO05D009798 2.2e-96 355.9 228 82.0
A04p09560 Brassica napus HOM05D003517 ORTHO05D009798 3.8e-96 355.1 228 82.0
BolSC28t60322H Brassica oleracea HOM05D003517 ORTHO05D009798 3.8e-96 355.1 228 82.0
BraSC48t46302Z Brassica rapa HOM05D003517 ORTHO05D009798 3.8e-96 355.1 228 82.0
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 6.5e-96 354.4 218 82.1
AT2G07734 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 2.5e-95 352.4 228 81.1
ATMG00290 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 2.5e-95 352.4 228 81.1
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 4.2e-95 351.7 218 82.1
BraSC48t46288Z Brassica rapa HOM05D003517 ORTHO05D009798 2.0e-92 342.8 229 79.9
SGA_v2.0_scaffold420G51390 Striga asiatica HOM05D003517 ORTHO05D009798 4.4e-92 341.7 227 78.4
Hma1.2p1_0020F.1_g014210 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 9.8e-92 340.5 204 83.8
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.7e-91 338.6 216 79.2
Zm00001eb436030 Zea mays HOM05D003517 ORTHO05D009798 3.3e-87 325.5 236 72.0
GSVIVG01006669001 Vitis vinifera HOM05D003517 ORTHO05D009798 2.8e-86 322.4 226 74.8
SabraMtG0002700 Salix brachista HOM05D000890 ORTHO05D000697 3.4e-84 315.5 223 74.9
Eucgr.H02717 Eucalyptus grandis HOM05D003517 ORTHO05D009798 1.4e-77 293.5 171 86.5
HanXRQChr16g0504301 Helianthus annuus HOM05D003517 ORTHO05D009798 4.9e-75 285.0 204 74.5
HanXRQMTg0579381 Helianthus annuus HOM05D003517 ORTHO05D009798 4.9e-75 285.0 204 74.5
Lsat_1_v5_gn_7_67721 Lactuca sativa HOM05D003517 ORTHO05D009798 1.4e-74 283.5 204 74.0
TPR.G36113 Trifolium pratense HOM05D003517 ORTHO05D009798 1.9e-66 256.5 146 87.0
unitig_87.g28026 Utricularia gibba HOM05D003517 ORTHO05D009798 5.2e-61 238.4 198 65.7
SHI35305 Sapria himalayana HOM05D003517 ORTHO05D009798 6.0e-57 224.9 174 69.0
Sp3g25550 Schrenkiella parvula HOM05D003517 ORTHO05D009798 1.0e-56 224.2 146 81.5
Nitab4.5_0003945g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.7e-54 215.3 139 77.7
Nitab4.5_0000172g2130 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.2e-51 206.5 134 76.9
Zm00001eb384400 Zea mays HOM05D003517 ORTHO05D009798 2.4e-50 203.0 125 80.0
Oeu013683.1 Olea europaea HOM05D003517 ORTHO05D009798 2.7e-49 199.5 173 62.4
Zm00001eb438110 Zea mays HOM05D003517 ORTHO05D009798 1.0e-48 197.6 152 69.1
Zm00001eb438970 Zea mays HOM05D003517 ORTHO05D009798 1.0e-48 197.6 152 69.1
Zm00001eb439050 Zea mays HOM05D003517 ORTHO05D009798 1.0e-48 197.6 152 69.1
Zm00001eb440630 Zea mays HOM05D003517 ORTHO05D009798 1.0e-48 197.6 152 69.1
HanXRQChr10g0310901 Helianthus annuus HOM05D003517 ORTHO05D009798 1.7e-48 196.8 134 78.4
BraSC48t46337Z Brassica rapa HOM05D003517 ORTHO05D009798 6.6e-48 194.9 137 79.6
Gorai.001G161800 Gossypium raimondii HOM05D003517 ORTHO05D009798 1.3e-46 190.7 179 63.7
CAN.G85.23 Capsicum annuum HOM05D003517 ORTHO05D009798 2.4e-45 186.4 112 82.1
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 5.8e-36 155.2 137 60.6
PGSC0003DMG400033608 Solanum tuberosum HOM05D003517 ORTHO05D009798 6.4e-35 151.8 116 70.7
TPR.G20538 Trifolium pratense HOM05D003517 ORTHO05D009798 1.3e-30 137.5 77 90.9
TPR.G31549 Trifolium pratense HOM05D003517 ORTHO05D009798 4.8e-30 135.6 78 87.2
SEGI_36410 Sequoiadendron giganteum HOM05D003517 ORTHO05D009798 1.1e-29 134.4 212 45.3
Hma1.2p1_0020F.1_g014220 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 2.4e-29 133.3 83 81.9
Nitab4.5_0001152g1080 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.2e-28 131.0 89 75.3
BolSC28t60424H Brassica oleracea HOM05D003517 ORTHO05D009798 2.0e-28 130.2 79 82.3
Zm00001eb438100 Zea mays HOM05D003517 ORTHO05D009798 1.3e-27 127.5 75 81.3
Zm00001eb438980 Zea mays HOM05D003517 ORTHO05D009798 1.3e-27 127.5 75 81.3
Zm00001eb439060 Zea mays HOM05D003517 ORTHO05D009798 1.3e-27 127.5 75 81.3
CAN.G1109.3 Capsicum annuum HOM05D003517 ORTHO05D009798 2.2e-27 126.7 79 79.7
Solyc10g045740.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 2.2e-27 126.7 98 64.3
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 4.9e-27 125.6 106 63.2
PSO063G7170 Papaver somniferum HOM05D003517 ORTHO05D009798 1.1e-26 124.4 120 57.5
CARHR287140 Cardamine hirsuta HOM05D003517 ORTHO05D009798 9.3e-26 121.3 80 78.8
PSO585G0042 Papaver somniferum HOM05D003517 ORTHO05D009798 2.7e-25 119.8 120 55.0
Lalb_Chr22g0353801 Lupinus albus HOM05D003517 ORTHO05D009798 3.5e-25 119.4 69 87.0
Nitab4.5_0001152g0480 Nicotiana tabacum HOM05D003517 ORTHO05D009798 8.7e-24 114.8 181 40.3
Nitab4.5_0000172g2160 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.1e-23 114.4 74 75.7
Solyc11g030935.1 Solanum lycopersicum HOM05D003517 ORTHO05D009798 2.1e-22 110.2 97 62.9
Dinv18903 Davidia involucrata HOM05D003517 ORTHO05D009798 1.6e-17 94.0 50 92.0
Lalb_Chr22g0353791 Lupinus albus HOM05D003517 ORTHO05D009798 2.7e-17 93.2 58 81.0
Nitab4.5_0008059g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.6e-17 92.4 61 78.7
Nn1g09918 Nelumbo nucifera HOM05D003517 ORTHO05D009798 6.1e-17 92.0 54 87.0
Nitab4.5_0001152g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.9e-16 89.4 57 77.2
PSO339G1469 Papaver somniferum HOM05D003517 ORTHO05D009798 3.3e-15 86.3 64 62.5
PSO513G0171 Papaver somniferum HOM05D003517 ORTHO05D009798 1.6e-14 84.0 131 38.2
EL10Ac7g18051 Beta vulgaris HOM05D003517 ORTHO05D009798 1.4e-13 80.9 92 51.1
Nitab4.5_0000172g1110 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.6e-12 76.6 56 66.1
Medtr0030s0090 Medicago truncatula HOM05D003517 ORTHO05D009798 1.6e-09 67.4 36 86.1
Lj2g0009144 Lotus japonicus HOM05D000751 ORTHO05D000889 6.1e-09 65.5 37 86.5
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 5.1e-08 62.4 38 76.3
HanXRQChr10g0302361 Helianthus annuus HOM05D003517 ORTHO05D009798 8.8e-08 61.6 59 59.3
Nitab4.5_0006196g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.1e-07 61.2 42 71.4
Solyc11g030940.3 Solanum lycopersicum HOM05D003517 ORTHO05D009798 2.6e-07 60.1 40 67.5


User provided reference genes

Program Settings