Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02172 Eucalyptus grandis HOM05D006401 ORTHO05D007864 4.8e-165 584.3 279 100.0
PGR044G1973 Punica granatum HOM05D006401 ORTHO05D007864 4.6e-75 285.4 204 66.7
MSTRG.5961 Avicennia marina HOM05D006401 ORTHO05D007864 1.3e-72 277.3 193 67.9
Phvul.002G302500 Phaseolus vulgaris HOM05D006401 ORTHO05D007864 5.3e-71 271.9 197 66.0
QL11p008681 Quercus lobata HOM05D006401 ORTHO05D007864 4.5e-70 268.9 201 63.7
Glyma.08G027300 Glycine max HOM05D006401 ORTHO05D007864 1.3e-69 267.3 198 64.6
TAR626G0078 Trochodendron aralioides HOM05D006401 ORTHO05D007864 8.5e-69 264.6 197 65.5
Dinv12612 Davidia involucrata HOM05D006401 ORTHO05D007864 1.9e-68 263.5 208 62.0
Sabra18G0128800 Salix brachista HOM05D006401 ORTHO05D007864 1.9e-68 263.5 201 63.7
Ciclev10008288m.g Citrus clementina HOM05D006401 ORTHO05D007864 3.2e-68 262.7 233 58.4
GSVIVG01013042001 Vitis vinifera HOM05D006401 ORTHO05D007864 1.2e-67 260.8 197 65.0
CsaV3_1G004580 Cucumis sativus L. HOM05D006401 ORTHO05D007864 3.6e-67 259.2 197 63.5
Sabra18G0121600 Salix brachista HOM05D006401 ORTHO05D007864 3.6e-67 259.2 200 63.0
Thecc.09G196700 Theobroma cacao HOM05D006401 ORTHO05D007864 4.7e-67 258.8 197 63.5
Sed0005150 Sechium edule HOM05D006401 ORTHO05D007864 1.0e-66 257.7 200 62.0
Lalb_Chr05g0223791 Lupinus albus HOM05D006401 ORTHO05D007864 1.4e-66 257.3 198 63.1
Psat7g020960 Pisum sativum HOM05D006401 ORTHO05D007864 1.4e-66 257.3 195 62.1
Manes.02G221700 Manihot esculenta HOM05D006401 ORTHO05D007864 1.8e-66 256.9 197 63.5
Potri.018G147400 Populus trichocarpa HOM05D006401 ORTHO05D007864 3.0e-66 256.1 201 61.7
ClCG06G014090 Citrullus lanatus HOM05D006401 ORTHO05D007864 8.8e-66 254.6 209 58.4
Nitab4.5_0008632g0020 Nicotiana tabacum HOM05D006401 ORTHO05D007864 8.8e-66 254.6 199 58.3
Rhsim03G0113000 Rhododendron simsii HOM05D006401 ORTHO05D007864 8.8e-66 254.6 195 61.5
Sopen07g005990 Solanum pennellii HOM05D006401 ORTHO05D007864 1.1e-65 254.2 203 58.6
Cc00_g00110 Coffea canephora HOM05D006401 ORTHO05D007864 3.3e-65 252.7 203 58.6
Migut.J00842 Erythranthe guttata HOM05D006401 ORTHO05D007864 3.3e-65 252.7 208 59.6
Nn8g41133 Nelumbo nucifera HOM05D006401 ORTHO05D007864 3.3e-65 252.7 197 60.9
arahy.Tifrunner.gnm1.ann1.IH6H8X Arachis hypogaea HOM05D006401 ORTHO05D007864 1.3e-64 250.8 223 56.1
arahy.Tifrunner.gnm1.ann1.Y2X24R Arachis hypogaea HOM05D006401 ORTHO05D007864 2.2e-64 250.0 223 56.1
TPR.G32971 Trifolium pratense HOM05D006401 ORTHO05D007864 4.8e-64 248.8 193 60.6
CSS0033991 Camellia sinensis var. sinensis HOM05D006401 ORTHO05D007864 6.3e-64 248.4 196 63.8
CANSAT80G2545 Cannabis sativa HOM05D006401 ORTHO05D007864 6.3e-64 248.4 199 60.3
Hma1.2p1_0314F.1_g122060 Hydrangea macrophylla HOM05D006401 ORTHO05D007864 6.3e-64 248.4 208 58.2
Atru.chr7.892 Acer truncatum HOM05D006401 ORTHO05D007864 8.2e-64 248.1 197 61.4
Ca_17430_v3 Cicer arietinum L. HOM05D006401 ORTHO05D007864 8.2e-64 248.1 193 61.7
Ca_17439_v3 Cicer arietinum L. HOM05D006401 ORTHO05D007864 8.2e-64 248.1 193 61.7
MBI13_g31574_MAGBIO Magnolia biondii HOM05D006401 ORTHO05D007864 1.1e-63 247.7 201 59.2
HPP92_019927 Vanilla planifolia HOM05D006401 ORTHO05D007864 1.1e-63 247.7 214 56.5
Aqoxy7G02629 Aquilegia oxysepala HOM05D006401 ORTHO05D007864 1.4e-63 247.3 207 59.9
Medtr8g101250 Medicago truncatula HOM05D006401 ORTHO05D007864 1.4e-63 247.3 193 61.7
Actinidia02474 Actinidia chinensis HOM05D006401 ORTHO05D007864 2.4e-63 246.5 204 59.3
Sc23g0004370 Simmondsia chinensis HOM05D006401 ORTHO05D007864 4.1e-63 245.7 195 60.0
Lj4g0001613 Lotus japonicus HOM05D006401 ORTHO05D007864 5.3e-63 245.4 200 61.0
SalBow6G4903 Salvia bowleyana HOM05D006401 ORTHO05D007864 4.5e-62 242.3 232 53.4
EL10Ac2g03627 Beta vulgaris HOM05D006401 ORTHO05D007864 3.8e-61 239.2 197 60.9
THA.LOC104826573 Tarenaya hassleriana HOM05D006401 ORTHO05D007864 3.8e-61 239.2 195 59.0
Duzib170G0999 Durio zibethinus HOM05D006401 ORTHO05D007864 5.0e-61 238.8 200 58.5
VMungo0251G1477 Vigna mungo HOM05D006401 ORTHO05D007864 5.0e-61 238.8 246 50.8
CDE05G1304 Ceratophyllum demersum HOM05D006401 ORTHO05D007864 2.5e-60 236.5 197 57.4
MELO3C017384.2 Cucumis melo HOM05D006401 ORTHO05D007864 3.2e-60 236.1 249 49.8
Gohir.D04G087600 Gossypium hirsutum HOM05D006401 ORTHO05D007864 4.2e-60 235.7 203 55.7
Gorai.012G097600 Gossypium raimondii HOM05D006401 ORTHO05D007864 4.2e-60 235.7 205 55.1
PSO170G1271 Papaver somniferum HOM05D006401 ORTHO05D007864 5.5e-60 235.3 206 56.3
Prupe.1G064000 Prunus persica HOM05D006401 ORTHO05D007864 5.5e-60 235.3 198 58.1
MD13G1232500 Malus domestica HOM05D006401 ORTHO05D007864 9.4e-60 234.6 198 58.6
Gohir.A04G052200 Gossypium hirsutum HOM05D006401 ORTHO05D007864 1.2e-59 234.2 203 55.7
Ah.11g043600 Amaranthus hybridus HOM05D006401 ORTHO05D007864 1.6e-59 233.8 197 59.9
HanXRQChr10g0309551 Helianthus annuus HOM05D006401 ORTHO05D007864 2.1e-59 233.4 195 56.9
AUR62027987 Chenopodium quinoa HOM05D006401 ORTHO05D007864 4.7e-59 232.3 201 56.2
PSO063G4133 Papaver somniferum HOM05D006401 ORTHO05D007864 4.7e-59 232.3 204 54.4
RcHm_v2.0_Chr4g0397611 Rosa chinensis HOM05D006401 ORTHO05D007864 8.0e-59 231.5 200 57.5
AT5G35400 Arabidopsis thaliana HOM05D006401 ORTHO05D007864 1.4e-58 230.7 196 58.7
AUR62020726 Chenopodium quinoa HOM05D006401 ORTHO05D007864 1.4e-58 230.7 201 57.7
SGA_v2.0_scaffold318G48475 Striga asiatica HOM05D006401 ORTHO05D007864 1.4e-58 230.7 226 51.8
Carub.0007s3123 Capsella rubella HOM05D006401 ORTHO05D007864 1.8e-58 230.3 198 59.1
Zm00001eb274430 Zea mays HOM05D006401 ORTHO05D007864 3.0e-58 229.6 227 53.7
Sp7g07040 Schrenkiella parvula HOM05D006401 ORTHO05D007864 5.2e-58 228.8 196 57.1
AL7G44200 Arabidopsis lyrata HOM05D006401 ORTHO05D007864 1.2e-57 227.6 196 57.7
Cfa020752 Carpinus fangiana HOM05D006401 ORTHO05D007864 1.5e-57 227.3 196 57.7
BcaB04g18045 Brassica carinata HOM05D006401 ORTHO05D007864 2.0e-57 226.9 200 57.0
FvH4_4g06050 Fragaria vesca HOM05D006401 ORTHO05D007864 7.5e-57 224.9 197 56.3
ECA236G1652 Erigeron canadensis HOM05D006401 ORTHO05D007864 9.7e-57 224.6 194 55.2
Thhalv10003453m.g Eutrema salsugineum HOM05D006401 ORTHO05D007864 2.4e-55 219.9 197 55.3
COL.COLO4_23416 Corchorus olitorius HOM05D006401 ORTHO05D007864 9.1e-55 218.0 170 60.0
Nitab4.5_0000899g0070 Nicotiana tabacum HOM05D006401 ORTHO05D007864 9.1e-55 218.0 204 53.4
Solyc07g017260.2 Solanum lycopersicum HOM05D006401 ORTHO05D007864 9.1e-55 218.0 173 61.3
PGSC0003DMG401009562 Solanum tuberosum HOM05D006401 ORTHO05D007864 1.2e-54 217.6 177 59.9
BcaC07g37665 Brassica carinata HOM05D006401 ORTHO05D007864 2.0e-54 216.9 198 55.6
BolC8t48034H Brassica oleracea HOM05D006401 ORTHO05D007864 2.0e-54 216.9 198 55.6
Glyma.05G220800 Glycine max HOM05D006401 ORTHO05D007864 2.0e-54 216.9 171 62.6
Lsat_1_v5_gn_5_80461 Lactuca sativa HOM05D006401 ORTHO05D007864 2.0e-54 216.9 193 56.0
A08p09710 Brassica napus HOM05D006401 ORTHO05D007864 2.7e-54 216.5 198 55.6
BraA08t32967Z Brassica rapa HOM05D006401 ORTHO05D007864 2.7e-54 216.5 198 55.6
SHI03133 Sapria himalayana HOM05D006401 ORTHO05D007864 2.7e-54 216.5 179 60.3
Cpa.g.sc115.22 Carica papaya HOM05D006401 ORTHO05D007864 5.9e-54 215.3 177 59.9
FAN12G0292 Fragaria x ananassa HOM05D006401 ORTHO05D007864 5.9e-54 215.3 211 52.6
DCAR_010674 Daucus carota HOM05D006401 ORTHO05D007864 1.0e-53 214.5 197 54.8
Aa31LG8G10590 Aethionema arabicum HOM05D006401 ORTHO05D007864 3.8e-53 212.6 195 54.9
FAN22G1023 Fragaria x ananassa HOM05D006401 ORTHO05D007864 2.7e-51 206.5 202 53.0
ATR0626G158 Amborella trichopoda HOM05D006401 ORTHO05D007864 2.3e-50 203.4 155 63.2
FAN17G0150 Fragaria x ananassa HOM05D006401 ORTHO05D007864 7.5e-49 198.4 190 54.2
Os06g0663100 Oryza sativa ssp. japonica HOM05D006401 ORTHO05D007864 5.4e-47 192.2 167 56.9
Hund19359 Selenicereus undatus HOM05D006401 ORTHO05D007864 1.1e-44 184.5 170 54.1
CiPaw.16G104000 Carya illinoinensis HOM05D006401 ORTHO05D007864 5.7e-41 172.2 116 71.6
Oeu021025.1 Olea europaea HOM05D006401 ORTHO05D007864 1.4e-39 167.5 106 73.6
CAN.G146.3 Capsicum annuum HOM05D006401 ORTHO05D007864 2.5e-36 156.8 105 71.4
Haze_19099 Corylus avellana HOM05D006401 ORTHO05D007864 2.5e-36 156.8 122 59.0
CBR_g44387 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-35 154.1 262 38.9
Lju50A23T28 Lonicera japonica HOM05D006401 ORTHO05D007864 2.3e-34 150.2 111 65.8
SMO232G0120 Selaginella moellendorffii HOM05D006401 ORTHO05D007864 1.6e-30 137.5 122 54.9
CARHR217420 Cardamine hirsuta HOM05D006401 ORTHO05D007864 1.4e-23 114.4 78 69.2
Oeu036951.3 Olea europaea HOM05D006401 ORTHO05D007864 6.8e-18 95.5 66 66.7
CDE05G1402 Ceratophyllum demersum HOM05D000163 ORTHO05D007864 6.4e-16 89.0 64 65.6
Nn8g41111 Nelumbo nucifera HOM05D006401 ORTHO05D007864 5.6e-12 75.9 57 57.9
MELO3C009013.2 Cucumis melo HOM05D006401 ORTHO05D007864 4.0e-10 69.7 46 67.4
Cre01.g021900 Chlamydomonas reinhardtii HOM05D006401 ORTHO05D007864 5.2e-10 69.3 241 27.4
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 7.6e-09 65.5 104 36.5
Oeu021024.1 Olea europaea HOM05D006401 ORTHO05D007864 9.9e-09 65.1 76 46.1
Cre13.g591501 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 1.7e-08 64.3 124 32.3
Lj6A702T41 Lonicera japonica HOM05D006708 ORTHO05D008321 6.4e-08 62.4 104 35.6
Pp3c5_14220 Physcomitrium patens HOM05D004376 ORTHO05D005304 1.1e-07 61.6 157 27.4
Mapoly0001s0557 Marchantia polymorpha HOM05D004376 ORTHO05D005304 1.9e-07 60.8 135 29.6
A06p16450 Brassica napus HOM05D004376 ORTHO05D005304 2.4e-07 60.5 139 30.2
Sp3g05900 Schrenkiella parvula HOM05D006708 ORTHO05D008321 2.4e-07 60.5 142 28.9
BraA06t24749Z Brassica rapa HOM05D004376 ORTHO05D005304 4.1e-07 59.7 139 30.2
Lsat_1_v5_gn_1_39980 Lactuca sativa HOM05D006708 ORTHO05D008321 4.1e-07 59.7 104 35.6
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 4.1e-07 59.7 104 34.6
VMungo0464G1025 Vigna mungo HOM05D006401 ORTHO05D007864 4.1e-07 59.7 41 65.9
PSO210G5816 Papaver somniferum HOM05D006708 ORTHO05D008321 7.1e-07 58.9 104 35.6
SEGI_17053 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 7.1e-07 58.9 52 50.0
BcaC05g25947 Brassica carinata HOM05D004376 ORTHO05D005304 9.2e-07 58.5 139 30.2
C05p18990 Brassica napus HOM05D004376 ORTHO05D005304 9.2e-07 58.5 139 30.2
BolC5t30599H Brassica oleracea HOM05D004376 ORTHO05D005304 9.2e-07 58.5 139 30.2
PSO761G0290 Papaver somniferum HOM05D006708 ORTHO05D008321 1.6e-06 57.8 104 34.6
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 2.1e-06 57.4 107 35.5
Zm00001eb245280 Zea mays HOM05D006708 ORTHO05D008321 2.1e-06 57.4 151 31.8
EL10Ac3g06239 Beta vulgaris HOM05D006708 ORTHO05D008321 2.7e-06 57.0 128 33.6
VMungo1215G0405 Vigna mungo HOM05D004376 ORTHO05D005304 2.7e-06 57.0 114 33.3
HanXRQChr06g0184861 Helianthus annuus HOM05D004376 ORTHO05D005304 3.5e-06 56.6 111 33.3
MCO13G233 Micromonas commoda HOM05D006708 ORTHO05D008321 3.5e-06 56.6 104 32.7
Phvul.003G122200 Phaseolus vulgaris HOM05D006708 ORTHO05D008321 3.5e-06 56.6 104 34.6
Sc19g0001720 Simmondsia chinensis HOM05D004376 ORTHO05D005304 3.5e-06 56.6 114 33.3
BcaNung05111 Brassica carinata HOM05D004376 ORTHO05D005304 4.6e-06 56.2 114 32.5
BolC6t40045H Brassica oleracea HOM05D004376 ORTHO05D005304 4.6e-06 56.2 114 32.5
Glyma.13G119200 Glycine max HOM05D006708 ORTHO05D008321 4.6e-06 56.2 104 34.6
SHI08024 Sapria himalayana HOM05D004376 ORTHO05D005304 4.6e-06 56.2 113 32.7
vmacro04385 Vaccinium macrocarpon HOM05D004376 ORTHO05D005304 4.6e-06 56.2 110 32.7
arahy.Tifrunner.gnm1.ann1.H7T0W5 Arachis hypogaea HOM05D006708 ORTHO05D008321 6.0e-06 55.8 104 34.6
arahy.Tifrunner.gnm1.ann1.YU479Z Arachis hypogaea HOM05D006708 ORTHO05D008321 6.0e-06 55.8 104 34.6
COL.COLO4_36544 Corchorus olitorius HOM05D004376 ORTHO05D005304 6.0e-06 55.8 112 32.1
Sc19g0002530 Simmondsia chinensis HOM05D006708 ORTHO05D008321 6.0e-06 55.8 104 35.6
HPP92_021052 Vanilla planifolia HOM05D004376 ORTHO05D005304 6.0e-06 55.8 92 38.0
VMungo1215G1693 Vigna mungo HOM05D006708 ORTHO05D008321 6.0e-06 55.8 104 34.6
Aa31LG5G17510 Aethionema arabicum HOM05D006708 ORTHO05D008321 7.8e-06 55.5 104 31.7
Aa31LG7G4710 Aethionema arabicum HOM05D004376 ORTHO05D005304 7.8e-06 55.5 113 33.6
AagrBONN_evm.TU.Sc2ySwM_228.5747 Anthoceros agrestis HOM05D004376 ORTHO05D005304 7.8e-06 55.5 138 26.8
Aqoxy6G01883 Aquilegia oxysepala HOM05D004376 ORTHO05D005304 7.8e-06 55.5 112 33.9
CANSAT64G0974 Cannabis sativa HOM05D006708 ORTHO05D008321 7.8e-06 55.5 104 35.6
Glyma.19G018000 Glycine max HOM05D004376 ORTHO05D005304 7.8e-06 55.5 107 32.7
Rhsim12G0000100 Rhododendron simsii HOM05D006708 ORTHO05D007921 7.8e-06 55.5 120 31.7
Zm00001eb250100 Zea mays HOM05D004376 ORTHO05D005304 7.8e-06 55.5 112 34.8


User provided reference genes

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