Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 5.0e-213 744.2 385 100.0
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 1.5e-92 344.0 276 64.5
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 2.4e-90 336.7 267 66.3
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 1.1e-87 327.8 269 63.2
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 1.5e-87 327.4 268 63.4
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 1.5e-87 327.4 270 60.7
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 5.6e-87 325.5 277 61.0
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 7.3e-87 325.1 266 62.4
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 2.8e-86 323.2 266 62.0
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 4.7e-86 322.4 235 65.1
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.8e-85 320.5 290 56.9
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 5.2e-85 318.9 273 61.2
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 9.9e-84 314.7 290 55.5
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 2.9e-83 313.2 277 58.5
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 3.8e-83 312.8 267 59.6
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.4e-82 310.8 268 58.2
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 9.2e-82 308.1 268 58.2
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 1.2e-81 307.8 261 58.6
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 1.6e-81 307.4 261 59.4
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 2.7e-81 306.6 267 56.9
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 3.5e-81 306.2 267 57.3
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 7.8e-81 305.1 263 58.6
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 1.0e-80 304.7 266 57.5
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 2.3e-80 303.5 267 60.3
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 6.6e-80 302.0 237 62.4
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 1.1e-79 301.2 271 57.9
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 1.9e-79 300.4 266 58.3
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 1.9e-79 300.4 252 60.3
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 6.2e-78 295.4 252 57.9
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 1.1e-77 294.7 266 54.9
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 1.1e-77 294.7 242 61.6
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 1.8e-77 293.9 267 56.6
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 4.0e-77 292.7 229 60.7
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 5.2e-77 292.4 265 57.4
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 6.9e-77 292.0 260 55.4
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 6.9e-77 292.0 262 56.5
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 1.5e-76 290.8 267 54.7
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 2.6e-76 290.0 265 56.2
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 3.4e-76 289.7 227 62.1
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 3.4e-76 289.7 267 55.8
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 4.4e-76 289.3 241 60.2
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 7.6e-76 288.5 260 55.0
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 7.6e-76 288.5 224 61.2
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 1.4e-74 284.3 283 50.2
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 1.9e-74 283.9 253 56.9
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 3.2e-74 283.1 252 55.6
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 4.2e-74 282.7 253 57.7
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 9.3e-74 281.6 229 61.6
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 2.1e-73 280.4 263 54.0
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 2.7e-73 280.0 253 56.1
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 3.5e-73 279.6 244 56.6
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 7.8e-73 278.5 266 54.9
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 1.0e-72 278.1 269 56.5
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 2.3e-72 276.9 269 51.3
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 3.0e-72 276.6 225 60.0
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 5.1e-72 275.8 251 55.4
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 5.1e-72 275.8 227 55.5
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 6.6e-72 275.4 266 53.4
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.1e-71 274.6 229 58.1
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 1.5e-71 274.2 278 51.8
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.5e-71 273.5 259 53.3
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 4.3e-71 272.7 269 53.2
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 1.6e-70 270.8 292 47.3
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 4.8e-70 269.2 248 53.2
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.4e-69 267.7 281 49.1
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 2.4e-69 266.9 248 52.8
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 6.9e-69 265.4 268 51.1
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.2e-68 264.6 228 56.6
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 1.5e-68 264.2 254 52.0
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.7e-67 260.8 217 54.4
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 4.9e-67 259.2 266 49.2
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 4.9e-67 259.2 272 50.4
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 1.9e-66 257.3 266 49.2
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 3.2e-66 256.5 268 49.6
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 9.3e-66 255.0 266 48.1
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 9.3e-66 255.0 271 51.7
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 9.3e-66 255.0 265 50.6
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 1.6e-65 254.2 241 55.6
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 4.6e-65 252.7 268 48.5
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 4.6e-65 252.7 266 48.1
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 4.6e-65 252.7 267 48.7
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 7.9e-65 251.9 259 48.6
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 7.9e-65 251.9 266 47.4
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 3.0e-64 250.0 278 48.9
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 3.9e-64 249.6 156 76.9
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 8.7e-64 248.4 244 49.2
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 8.7e-64 248.4 267 46.8
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 8.7e-64 248.4 394 38.6
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 2.5e-63 246.9 229 52.4
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 3.7e-62 243.0 265 49.4
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 6.2e-62 242.3 288 45.8
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 6.2e-62 242.3 255 50.2
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 6.2e-62 242.3 270 46.7
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 8.1e-62 241.9 241 51.0
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 8.1e-62 241.9 225 52.9
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.8e-61 240.7 225 52.9
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 3.1e-61 240.0 238 52.1
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 1.2e-60 238.0 271 47.2
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 1.2e-60 238.0 277 48.0
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 1.5e-60 237.7 319 44.2
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.6e-60 236.9 278 47.1
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 9.9e-60 235.0 322 41.6
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.3e-59 234.6 278 48.2
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.9e-58 230.7 277 46.6
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 4.2e-58 229.6 238 51.7
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 7.1e-58 228.8 232 46.1
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 2.1e-57 227.3 232 45.3
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 2.1e-57 227.3 232 45.3
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 3.5e-57 226.5 239 50.2
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 8.2e-54 215.3 221 51.6
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 9.3e-50 201.8 248 42.3
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 1.3e-48 198.0 267 41.6
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.8e-48 197.6 140 68.6
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.5e-47 194.5 269 41.6
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 1.9e-47 194.1 149 64.4
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 5.7e-47 192.6 180 56.1
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 3.1e-45 186.8 149 63.1
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 2.0e-44 184.1 262 42.4
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.2e-42 176.8 242 42.1
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.9e-39 167.5 183 48.6
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 1.3e-38 164.9 150 56.0
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.4e-37 160.6 163 50.3
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 1.0e-35 155.2 199 43.2
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 1.9e-34 151.0 215 39.5
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 3.2e-34 150.2 179 45.8
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 7.2e-34 149.1 130 53.8
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 6.7e-32 142.5 311 31.2
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.3e-30 138.3 270 34.8
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 5.3e-29 132.9 197 39.6
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 9.1e-29 132.1 156 48.7
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.2e-27 127.5 180 41.1
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 5.0e-27 126.3 421 27.8
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 7.2e-26 122.5 99 57.6
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 6.7e-24 115.9 282 30.5
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 6.7e-24 115.9 78 65.4
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 2.0e-23 114.4 289 29.8
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 4.4e-23 113.2 220 30.9
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 7.4e-23 112.5 225 34.7
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 3.7e-22 110.2 266 32.3
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 1.6e-20 104.8 266 28.6
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 9.4e-18 95.5 142 38.7
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 3.6e-17 93.6 113 46.0
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 7.5e-15 85.9 186 29.6
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 3.7e-14 83.6 119 39.5
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 3.1e-13 80.5 60 61.7
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 5.3e-13 79.7 121 36.4
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 7.0e-13 79.3 101 39.6
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 1.2e-12 78.6 133 36.1
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 4.2e-10 70.1 114 33.3
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 6.1e-09 66.2 39 74.4
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 4.0e-08 63.5 121 32.2
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 4.0e-08 63.5 121 32.2
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 2.0e-07 61.2 66 47.0
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.0e-07 61.2 42 66.7
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 3.7e-06 57.0 61 37.7
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 4.8e-06 56.6 267 24.3
MCO01G198 Micromonas commoda HOM05D004374 ORTHO05D005430 6.3e-06 56.2 156 30.1
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 8.3e-06 55.8 36 66.7


User provided reference genes

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