Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00599 Eucalyptus grandis HOM05D005944 ORTHO05D007188 4.9e-140 501.1 252 100.0
Cc08_g09670 Coffea canephora HOM05D005944 ORTHO05D007188 1.5e-77 293.5 239 59.8
Hma1.2p1_0049F.1_g028530 Hydrangea macrophylla HOM05D005944 ORTHO05D007188 1.5e-77 293.5 239 61.1
Ciclev10009275m.g Citrus clementina HOM05D005944 ORTHO05D007188 5.9e-77 291.6 259 59.1
Manes.16G075200 Manihot esculenta HOM05D005944 ORTHO05D007188 2.9e-76 289.3 239 58.6
VMungo1309G1803 Vigna mungo HOM05D005944 ORTHO05D007188 2.9e-76 289.3 211 64.5
MBI01_g42891_MAGBIO Magnolia biondii HOM05D005944 ORTHO05D007188 3.8e-76 288.9 238 58.4
QL12p041319 Quercus lobata HOM05D005944 ORTHO05D007188 5.0e-76 288.5 236 60.6
Potri.006G238000 Populus trichocarpa HOM05D005944 ORTHO05D007188 6.5e-76 288.1 239 59.0
Cfa013369 Carpinus fangiana HOM05D005944 ORTHO05D007188 1.1e-75 287.3 247 59.9
COL.COLO4_20974 Corchorus olitorius HOM05D005944 ORTHO05D007188 1.4e-75 287.0 221 61.1
TPR.G15103 Trifolium pratense HOM05D005944 ORTHO05D007188 1.4e-75 287.0 236 62.7
Phvul.009G110100 Phaseolus vulgaris HOM05D005944 ORTHO05D007188 2.5e-75 286.2 211 63.0
Duzib168G0738 Durio zibethinus HOM05D005944 ORTHO05D007188 4.2e-75 285.4 218 62.4
Thecc.09G045700 Theobroma cacao HOM05D005944 ORTHO05D007188 5.5e-75 285.0 239 59.0
CiPaw.07G203800 Carya illinoinensis HOM05D005944 ORTHO05D007188 7.2e-75 284.6 236 60.2
Lalb_Chr11g0064511 Lupinus albus HOM05D005944 ORTHO05D007188 7.2e-75 284.6 239 60.3
Cpa.g.sc78.4 Carica papaya HOM05D005944 ORTHO05D007188 9.4e-75 284.3 229 59.0
Rhsim07G0147000 Rhododendron simsii HOM05D005944 ORTHO05D007188 1.6e-74 283.5 250 57.6
PGR031G3052 Punica granatum HOM05D005944 ORTHO05D007188 2.1e-74 283.1 262 56.5
Gohir.A06G092600 Gossypium hirsutum HOM05D005944 ORTHO05D007188 2.7e-74 282.7 219 62.1
CSS0001771 Camellia sinensis var. sinensis HOM05D005944 ORTHO05D007188 3.6e-74 282.3 245 56.7
Haze_21893 Corylus avellana HOM05D005944 ORTHO05D007188 3.6e-74 282.3 246 58.5
TAR626G0255 Trochodendron aralioides HOM05D005944 ORTHO05D007188 3.6e-74 282.3 236 59.3
Psat5g021160 Pisum sativum HOM05D005944 ORTHO05D007188 4.6e-74 282.0 239 59.8
CiPaw.08G026000 Carya illinoinensis HOM05D005944 ORTHO05D007188 7.9e-74 281.2 237 59.5
Gohir.D06G092200 Gossypium hirsutum HOM05D005944 ORTHO05D007188 1.4e-73 280.4 218 60.6
Gorai.010G106200 Gossypium raimondii HOM05D005944 ORTHO05D007188 2.3e-73 279.6 218 60.6
Nn8g39119 Nelumbo nucifera HOM05D005944 ORTHO05D007188 2.3e-73 279.6 248 58.5
Nitab4.5_0003794g0090 Nicotiana tabacum HOM05D005944 ORTHO05D007188 5.1e-73 278.5 253 54.5
Glyma.06G086100 Glycine max HOM05D005944 ORTHO05D007188 6.7e-73 278.1 219 61.2
Sabra06G0186300 Salix brachista HOM05D005944 ORTHO05D007188 8.8e-73 277.7 238 62.2
TWI34G0404 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 2.5e-72 276.2 211 62.6
Ca_15588_v3 Cicer arietinum L. HOM05D005944 ORTHO05D007188 3.3e-72 275.8 236 57.6
Medtr3g109690 Medicago truncatula HOM05D005944 ORTHO05D007188 3.3e-72 275.8 236 60.6
Sc09g0009310 Simmondsia chinensis HOM05D005944 ORTHO05D007188 3.3e-72 275.8 235 57.4
MELO3C011137.2 Cucumis melo HOM05D005944 ORTHO05D007188 4.3e-72 275.4 239 56.5
Oeu031102.1 Olea europaea HOM05D005944 ORTHO05D007188 4.3e-72 275.4 218 60.1
vmacro23277 Vaccinium macrocarpon HOM05D005944 ORTHO05D007188 4.3e-72 275.4 220 61.4
TWI63G0268 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 7.4e-72 274.6 220 60.9
MD08G1113400 Malus domestica HOM05D005944 ORTHO05D007188 1.7e-71 273.5 257 54.9
Prupe.1G447700 Prunus persica HOM05D005944 ORTHO05D007188 4.8e-71 271.9 242 57.4
Ah.10g034990 Amaranthus hybridus HOM05D005944 ORTHO05D007188 1.8e-70 270.0 216 59.3
PGSC0003DMG400002225 Solanum tuberosum HOM05D005944 ORTHO05D007188 1.8e-70 270.0 250 56.8
EL10Ac2g04013 Beta vulgaris HOM05D005944 ORTHO05D007188 5.3e-70 268.5 227 57.3
PSO173G0044 Papaver somniferum HOM05D005944 ORTHO05D007188 5.3e-70 268.5 237 56.5
MSTRG.11696 Avicennia marina HOM05D005944 ORTHO05D007188 9.1e-70 267.7 240 56.7
Sopen08g020390 Solanum pennellii HOM05D005944 ORTHO05D007188 5.9e-69 265.0 250 56.0
Aqoxy7G01465 Aquilegia oxysepala HOM05D005944 ORTHO05D007188 1.0e-68 264.2 234 55.6
Peaxi162Scf00227g00915 Petunia axillaris HOM05D005944 ORTHO05D007188 2.2e-68 263.1 219 57.5
EL10Ac2g04010 Beta vulgaris HOM05D005944 ORTHO05D007188 5.0e-68 261.9 227 55.9
Migut.A00199 Erythranthe guttata HOM05D005944 ORTHO05D007188 1.1e-67 260.8 250 56.4
Solyc08g066550.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 1.1e-67 260.8 250 54.8
Lsat_1_v5_gn_5_33661 Lactuca sativa HOM05D005944 ORTHO05D007188 2.5e-67 259.6 218 54.6
AUR62009271 Chenopodium quinoa HOM05D005944 ORTHO05D007188 3.2e-67 259.2 220 57.7
Lj1g0013558 Lotus japonicus HOM05D005944 ORTHO05D007188 3.2e-67 259.2 205 61.0
AUR62039710 Chenopodium quinoa HOM05D005944 ORTHO05D007188 9.4e-67 257.7 213 59.2
HanXRQChr08g0234421 Helianthus annuus HOM05D005944 ORTHO05D007188 7.9e-66 254.6 217 56.2
Oeu030719.1 Olea europaea HOM05D005944 ORTHO05D007188 1.8e-65 253.4 255 52.9
MD15G1092800 Malus domestica HOM05D005944 ORTHO05D007188 2.3e-65 253.1 250 54.0
Sed0026395 Sechium edule HOM05D005944 ORTHO05D007188 3.0e-65 252.7 234 54.7
DCAR_003123 Daucus carota HOM05D005944 ORTHO05D007188 5.1e-65 251.9 246 50.8
Sc09g0009320 Simmondsia chinensis HOM05D005944 ORTHO05D007188 5.1e-65 251.9 245 53.1
ECA246G4186 Erigeron canadensis HOM05D005944 ORTHO05D007188 6.7e-65 251.5 209 56.5
Sed0020456 Sechium edule HOM05D005944 ORTHO05D007188 8.8e-65 251.1 205 59.5
Atru.chr7.2083 Acer truncatum HOM05D005944 ORTHO05D007188 2.6e-64 249.6 251 52.6
Nitab4.5_0001567g0220 Nicotiana tabacum HOM05D005944 ORTHO05D007188 7.4e-64 248.1 210 57.1
SGA_v2.0_scaffold243G44289 Striga asiatica HOM05D005944 ORTHO05D007188 7.4e-64 248.1 214 57.5
CANSAT25G1052 Cannabis sativa HOM05D005944 ORTHO05D007188 6.3e-63 245.0 258 53.5
PGSC0003DMG400018561 Solanum tuberosum HOM05D005944 ORTHO05D007188 1.7e-60 236.9 224 52.7
SalBow4G1457 Salvia bowleyana HOM05D005944 ORTHO05D007188 1.1e-59 234.2 205 55.6
Zm00001eb384710 Zea mays HOM05D005944 ORTHO05D007188 9.4e-59 231.1 216 51.9
unitig_32.g11474 Utricularia gibba HOM05D005944 ORTHO05D007188 2.1e-58 229.9 250 49.2
Nitab4.5_0000664g0190 Nicotiana tabacum HOM05D005944 ORTHO05D007188 6.7e-57 224.9 235 52.3
CARHR201600 Cardamine hirsuta HOM05D005944 ORTHO05D007188 9.7e-56 221.1 240 47.5
Os06g0554100 Oryza sativa ssp. japonica HOM05D005944 ORTHO05D007188 1.3e-55 220.7 224 49.6
A10p26150 Brassica napus HOM05D005944 ORTHO05D007188 2.8e-55 219.5 272 43.8
BraA10t44674Z Brassica rapa HOM05D005944 ORTHO05D007188 2.8e-55 219.5 272 43.8
BolC9t59349H Brassica oleracea HOM05D005944 ORTHO05D007188 3.7e-55 219.2 272 43.8
Nitab4.5_0001515g0030 Nicotiana tabacum HOM05D005944 ORTHO05D007188 3.7e-55 219.2 255 47.5
BcaC04g19210 Brassica carinata HOM05D005944 ORTHO05D007188 4.8e-55 218.8 272 43.8
C09p65200 Brassica napus HOM05D005944 ORTHO05D007188 4.8e-55 218.8 272 43.8
Thhalv10014372m.g Eutrema salsugineum HOM05D005944 ORTHO05D007188 6.3e-55 218.4 242 47.1
AUR62011965 Chenopodium quinoa HOM05D005944 ORTHO05D007188 1.4e-54 217.2 212 48.1
THA.LOC104799702 Tarenaya hassleriana HOM05D005944 ORTHO05D007188 1.4e-54 217.2 251 48.2
Carub.0006s1010 Capsella rubella HOM05D005944 ORTHO05D007188 9.1e-54 214.5 242 46.3
BcaB08g37038 Brassica carinata HOM05D005944 ORTHO05D007188 1.6e-53 213.8 269 43.5
ECA233G3370 Erigeron canadensis HOM05D005944 ORTHO05D007188 2.0e-53 213.4 202 49.0
Sp6g32000 Schrenkiella parvula HOM05D005944 ORTHO05D007188 3.5e-53 212.6 250 45.2
Ah.02g111320 Amaranthus hybridus HOM05D005944 ORTHO05D007188 4.5e-53 212.2 226 47.8
TWI63G1513 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 7.7e-53 211.5 203 51.7
Aa31LG3G15570 Aethionema arabicum HOM05D005944 ORTHO05D007188 1.7e-52 210.3 279 41.6
AL6G22330 Arabidopsis lyrata HOM05D005944 ORTHO05D007188 2.9e-52 209.5 269 44.2
EL10Ac5g10487 Beta vulgaris HOM05D005944 ORTHO05D007188 2.5e-51 206.5 204 50.0
FvH4_2g35480 Fragaria vesca HOM05D005944 ORTHO05D007188 8.0e-50 201.4 204 48.5
FAN27G2199 Fragaria x ananassa HOM05D005944 ORTHO05D007188 1.0e-49 201.1 204 48.5
HanXRQChr02g0050591 Helianthus annuus HOM05D005944 ORTHO05D007188 1.4e-49 200.7 188 52.1
AT5G11620 Arabidopsis thaliana HOM05D005944 ORTHO05D007188 4.0e-49 199.1 239 44.8
RcHm_v2.0_Chr6g0306401 Rosa chinensis HOM05D005944 ORTHO05D007188 4.0e-49 199.1 206 46.6
FAN20G0862 Fragaria x ananassa HOM05D005944 ORTHO05D007188 4.4e-48 195.7 210 45.7
FAN15G0753 Fragaria x ananassa HOM05D005944 ORTHO05D007188 1.7e-47 193.7 204 47.1
HPP92_024066 Vanilla planifolia HOM05D005944 ORTHO05D007188 1.8e-46 190.3 210 49.5
ATR0561G048 Amborella trichopoda HOM05D005944 ORTHO05D007188 5.0e-44 182.2 208 48.1
Glyma.04G084500 Glycine max HOM05D005944 ORTHO05D007188 1.2e-42 177.6 131 70.2
Peaxi162Scf00247g00005 Petunia axillaris HOM05D005944 ORTHO05D007188 8.0e-42 174.9 117 68.4
Actinidia14678 Actinidia chinensis HOM05D005944 ORTHO05D007188 1.0e-41 174.5 137 63.5
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 5.2e-41 172.2 215 41.9
Sopen11g028870 Solanum pennellii HOM05D010581 ORTHO05D012655 3.4e-40 169.5 144 56.9
HanXRQChr13g0402041 Helianthus annuus HOM05D005944 ORTHO05D007188 1.7e-39 167.2 205 42.0
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 7.0e-38 161.8 200 42.5
Solyc11g071190.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 2.7e-37 159.8 112 66.1
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 5.0e-36 155.6 210 42.4
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 7.2e-35 151.8 200 40.5
PSO507G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 4.0e-33 146.0 195 42.1
Zm00001eb277580 Zea mays HOM05D005944 ORTHO05D007188 1.8e-30 137.1 180 45.0
AagrBONN_evm.TU.Sc2ySwM_228.5588 Anthoceros agrestis HOM05D005944 ORTHO05D007188 7.3e-27 125.2 211 36.0
Pp3c11_3140 Physcomitrium patens HOM05D005944 ORTHO05D007188 9.5e-27 124.8 247 34.0
SEGI_16652 Sequoiadendron giganteum HOM05D005944 ORTHO05D007188 8.0e-26 121.7 221 34.4
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 1.8e-25 120.6 216 35.6
SMO244G0014 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 5.2e-25 119.0 229 34.5
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 6.8e-25 118.6 216 35.6
SMO281G0003 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 8.9e-25 118.2 215 34.9
Cre09.g393550 Chlamydomonas reinhardtii HOM05D005944 ORTHO05D007188 1.4e-22 110.9 225 36.0
CDE05G1550 Ceratophyllum demersum HOM05D005944 ORTHO05D007188 8.6e-20 101.7 111 45.0
MCO02G382 Micromonas commoda HOM05D005944 ORTHO05D007188 4.9e-15 85.9 278 26.6
RcHm_v2.0_Chr6g0306391 Rosa chinensis HOM05D005944 ORTHO05D007188 3.0e-12 76.6 106 36.8
BolC2t06477H Brassica oleracea HOM05D005944 ORTHO05D007188 5.6e-11 72.4 130 36.9
RcHm_v2.0_Chr6g0306291 Rosa chinensis HOM05D005944 ORTHO05D007188 9.5e-11 71.6 54 53.7
C02p05290 Brassica napus HOM05D005944 ORTHO05D007188 1.6e-10 70.9 130 36.9
RcHm_v2.0_Chr6g0306281 Rosa chinensis HOM05D005944 ORTHO05D007188 6.2e-10 68.9 52 53.8
Mapoly0068s0072 Marchantia polymorpha HOM05D005944 ORTHO05D007188 4.0e-09 66.2 154 27.3


User provided reference genes

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