Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B04002 Eucalyptus grandis HOM05D005631 ORTHO05D006765 2.6e-84 315.5 175 100.0
Cfa011776 Carpinus fangiana HOM05D005631 ORTHO05D006765 3.9e-72 275.0 175 79.4
PGR102G0278 Punica granatum HOM05D005631 ORTHO05D006765 2.8e-70 268.9 175 83.4
CSS0000896 Camellia sinensis var. sinensis HOM05D005631 ORTHO05D006765 4.8e-70 268.1 175 80.0
Cpa.g.sc2.358 Carica papaya HOM05D005631 ORTHO05D006765 4.8e-70 268.1 175 78.9
Glyma.18G057300 Glycine max HOM05D005631 ORTHO05D006765 1.1e-69 266.9 175 78.3
Actinidia23857 Actinidia chinensis HOM05D005631 ORTHO05D006765 2.4e-69 265.8 175 78.9
Thecc.09G357600 Theobroma cacao HOM05D005631 ORTHO05D006765 3.1e-69 265.4 175 80.6
Lalb_Chr15g0083281 Lupinus albus HOM05D005631 ORTHO05D006765 4.1e-69 265.0 175 78.9
QL01p026260 Quercus lobata HOM05D005631 ORTHO05D006765 4.1e-69 265.0 174 77.6
ClCG02G019260 Citrullus lanatus HOM05D005631 ORTHO05D006765 2.0e-68 262.7 175 77.7
Hma1.2p1_1586F.1_g292190 Hydrangea macrophylla HOM05D005631 ORTHO05D006765 7.7e-68 260.8 175 78.3
TAR633G1157 Trochodendron aralioides HOM05D005631 ORTHO05D006765 1.0e-67 260.4 175 84.0
arahy.Tifrunner.gnm1.ann1.I7JS5F Arachis hypogaea HOM05D005631 ORTHO05D006765 1.3e-67 260.0 175 80.6
Gohir.A03G025600 Gossypium hirsutum HOM05D005631 ORTHO05D006765 1.3e-67 260.0 175 77.7
Gohir.D03G142900 Gossypium hirsutum HOM05D005631 ORTHO05D006765 1.3e-67 260.0 175 77.7
Gorai.003G150100 Gossypium raimondii HOM05D005631 ORTHO05D006765 1.3e-67 260.0 175 77.7
Rhsim01G0240900 Rhododendron simsii HOM05D005631 ORTHO05D006765 1.3e-67 260.0 171 80.7
Ca_15010_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 1.7e-67 259.6 175 77.7
SGA_v2.0_scaffold20G09058 Striga asiatica HOM05D005631 ORTHO05D006765 1.7e-67 259.6 176 77.3
CsaV3_6G015890 Cucumis sativus L. HOM05D005631 ORTHO05D006765 2.2e-67 259.2 175 78.3
MD03G1056300 Malus domestica HOM05D005631 ORTHO05D006765 2.9e-67 258.8 175 78.3
SalBow1G1570 Salvia bowleyana HOM05D005631 ORTHO05D006765 5.0e-67 258.1 175 80.0
Lsat_1_v5_gn_6_47101 Lactuca sativa HOM05D005631 ORTHO05D006765 6.5e-67 257.7 175 76.6
MELO3C025697.2 Cucumis melo HOM05D005631 ORTHO05D006765 8.5e-67 257.3 175 77.7
Glyma.11G164100 Glycine max HOM05D005631 ORTHO05D006765 1.5e-66 256.5 175 76.0
SGA_v2.0_scaffold18G08260 Striga asiatica HOM05D005631 ORTHO05D006765 1.5e-66 256.5 175 77.1
GSVIVG01033331001 Vitis vinifera HOM05D005631 ORTHO05D006765 1.5e-66 256.5 173 77.5
MSTRG.2645 Avicennia marina HOM05D005631 ORTHO05D006765 1.9e-66 256.1 175 78.9
Prupe.6G048500 Prunus persica HOM05D005631 ORTHO05D006765 2.5e-66 255.8 175 77.1
arahy.Tifrunner.gnm1.ann1.7E53FC Arachis hypogaea HOM05D005631 ORTHO05D006765 3.2e-66 255.4 184 75.0
Manes.02G211700 Manihot esculenta HOM05D005631 ORTHO05D006765 9.4e-66 253.8 175 76.6
Medtr3g465690 Medicago truncatula HOM05D005631 ORTHO05D006765 9.4e-66 253.8 175 76.0
vmacro14621 Vaccinium macrocarpon HOM05D005631 ORTHO05D006765 9.4e-66 253.8 178 77.0
Ciclev10029319m.g Citrus clementina HOM05D005631 ORTHO05D006765 2.1e-65 252.7 176 77.8
Cc07_g10850 Coffea canephora HOM05D005631 ORTHO05D006765 2.1e-65 252.7 176 81.8
Oeu059694.1 Olea europaea HOM05D005631 ORTHO05D006765 2.7e-65 252.3 175 76.0
Sed0015217 Sechium edule HOM05D005631 ORTHO05D006765 2.7e-65 252.3 175 74.9
HanXRQChr10g0284941 Helianthus annuus HOM05D005631 ORTHO05D006765 6.1e-65 251.1 175 75.4
Atru.chr3.4122 Acer truncatum HOM05D005631 ORTHO05D006765 8.0e-65 250.8 175 74.9
CANSAT54G1076 Cannabis sativa HOM05D005631 ORTHO05D006765 8.0e-65 250.8 175 76.0
MD11G1057500 Malus domestica HOM05D005631 ORTHO05D006765 1.0e-64 250.4 175 76.0
DCAR_004046 Daucus carota HOM05D005631 ORTHO05D006765 1.8e-64 249.6 175 73.7
RcHm_v2.0_Chr5g0071621 Rosa chinensis HOM05D005631 ORTHO05D006765 6.7e-64 247.7 175 76.0
Hund18954 Selenicereus undatus HOM05D000127 ORTHO05D006765 6.7e-64 247.7 175 73.1
Potri.013G152600 Populus trichocarpa HOM05D005631 ORTHO05D006765 8.8e-64 247.3 175 74.3
Nn1g05206 Nelumbo nucifera HOM05D005631 ORTHO05D006765 2.0e-63 246.1 175 77.7
Sabra13G0122700 Salix brachista HOM05D005631 ORTHO05D006765 2.0e-63 246.1 175 74.3
Lj6g0005877 Lotus japonicus HOM05D005631 ORTHO05D006765 2.6e-63 245.7 175 76.0
FAN11G1428 Fragaria x ananassa HOM05D005631 ORTHO05D006765 5.7e-63 244.6 175 75.4
FAN16G0042 Fragaria x ananassa HOM05D005631 ORTHO05D006765 5.7e-63 244.6 175 75.4
ECA248G0403 Erigeron canadensis HOM05D005631 ORTHO05D006765 1.7e-62 243.0 168 82.1
FvH4_3g39740 Fragaria vesca HOM05D005631 ORTHO05D006765 1.7e-62 243.0 175 74.9
FAN21G1424 Fragaria x ananassa HOM05D005631 ORTHO05D006765 1.7e-62 243.0 175 75.4
Migut.H00695 Erythranthe guttata HOM05D005631 ORTHO05D006765 4.8e-62 241.5 175 70.9
HPP92_019076 Vanilla planifolia HOM05D005631 ORTHO05D006765 4.8e-62 241.5 175 72.6
PSO349G0142 Papaver somniferum HOM05D005631 ORTHO05D006765 3.1e-61 238.8 176 72.7
Nitab4.5_0003548g0030 Nicotiana tabacum HOM05D005631 ORTHO05D006765 5.3e-61 238.0 175 72.6
THA.LOC104810692 Tarenaya hassleriana HOM05D005631 ORTHO05D006765 1.6e-60 236.5 175 72.6
ATR0304G021 Amborella trichopoda HOM05D005631 ORTHO05D006765 2.6e-60 235.7 175 71.4
Nitab4.5_0000438g0150 Nicotiana tabacum HOM05D005631 ORTHO05D006765 4.5e-60 235.0 175 74.3
PGSC0003DMG400022531 Solanum tuberosum HOM05D005631 ORTHO05D006765 4.5e-60 235.0 175 70.9
Solyc03g033480.4 Solanum lycopersicum HOM05D005631 ORTHO05D006765 5.9e-60 234.6 175 70.9
unitig_899.g14680 Utricularia gibba HOM05D005631 ORTHO05D006765 5.9e-60 234.6 175 78.3
CAN.G354.39 Capsicum annuum HOM05D005631 ORTHO05D006765 7.7e-60 234.2 175 70.3
VMungo1383G2760 Vigna mungo HOM05D005631 ORTHO05D006765 3.8e-59 231.9 153 76.5
FAN25G2299 Fragaria x ananassa HOM05D005631 ORTHO05D006765 2.5e-58 229.2 175 71.4
Sopen03g006230 Solanum pennellii HOM05D005631 ORTHO05D006765 2.5e-58 229.2 175 69.7
Aqoxy1G01288 Aquilegia oxysepala HOM05D005631 ORTHO05D006765 7.2e-58 227.6 169 80.5
A03p12230 Brassica napus HOM05D005631 ORTHO05D006765 2.1e-57 226.1 175 69.1
C03p14340 Brassica napus HOM05D005631 ORTHO05D006765 2.1e-57 226.1 175 69.1
BraA03t10534Z Brassica rapa HOM05D005631 ORTHO05D006765 2.1e-57 226.1 175 69.1
AL7G45820 Arabidopsis lyrata HOM05D005631 ORTHO05D006765 3.6e-57 225.3 175 68.6
C09p50330 Brassica napus HOM05D005631 ORTHO05D006765 3.6e-57 225.3 175 68.6
AT5G37055 Arabidopsis thaliana HOM05D005631 ORTHO05D006765 4.7e-57 224.9 175 69.1
A10p15820 Brassica napus HOM05D005631 ORTHO05D006765 4.7e-57 224.9 175 68.6
BraA10t43643Z Brassica rapa HOM05D005631 ORTHO05D006765 4.7e-57 224.9 175 68.6
Carub.0007s3232 Capsella rubella HOM05D005631 ORTHO05D006765 6.1e-57 224.6 175 68.0
BcaB08g36180 Brassica carinata HOM05D005631 ORTHO05D006765 8.0e-57 224.2 175 68.0
BcaC04g19866 Brassica carinata HOM05D005631 ORTHO05D006765 1.4e-56 223.4 175 68.0
BolC9t57889H Brassica oleracea HOM05D005631 ORTHO05D006765 1.4e-56 223.4 175 68.0
Os03g0367800 Oryza sativa ssp. japonica HOM05D005631 ORTHO05D006765 2.3e-56 222.6 174 66.7
Thhalv10014837m.g Eutrema salsugineum HOM05D005631 ORTHO05D006765 1.5e-55 219.9 175 68.0
BolC3t13878H Brassica oleracea HOM05D005631 ORTHO05D006765 2.6e-55 219.2 175 66.3
CARHR272280 Cardamine hirsuta HOM05D005631 ORTHO05D006765 3.4e-55 218.8 176 67.6
COL.COLO4_11152 Corchorus olitorius HOM05D005631 ORTHO05D006765 2.4e-53 212.6 140 79.3
Ca_15008_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 3.1e-53 212.2 151 76.2
Aa31LG11G240 Aethionema arabicum HOM05D000127 ORTHO05D007184 4.1e-53 211.8 176 63.6
Zm00001eb195120 Zea mays HOM05D005631 ORTHO05D006765 4.1e-53 211.8 174 64.4
Phvul.006G073900 Phaseolus vulgaris HOM05D005631 ORTHO05D006765 7.0e-53 211.1 153 73.2
SEGI_31870 Sequoiadendron giganteum HOM05D005631 ORTHO05D006765 1.2e-47 193.7 141 68.1
Oeu059678.1 Olea europaea HOM05D005631 ORTHO05D006765 1.5e-47 193.4 153 68.0
Psat5g026160 Pisum sativum HOM05D005631 ORTHO05D006765 5.4e-45 184.9 138 78.3
Mapoly0066s0110 Marchantia polymorpha HOM05D005631 ORTHO05D006765 7.0e-45 184.5 179 56.4
EL10Ac7g15917 Beta vulgaris HOM05D005631 ORTHO05D006765 1.2e-44 183.7 179 58.1
Atru.chr3.4121 Acer truncatum HOM05D005631 ORTHO05D006765 1.6e-44 183.3 165 67.3
TPR.G25706 Trifolium pratense HOM05D005631 ORTHO05D006765 1.7e-43 179.9 138 71.7
Pp3c4_18980 Physcomitrium patens HOM05D005631 ORTHO05D006765 2.9e-43 179.1 179 57.0
Sabra06G0125700 Salix brachista HOM05D005631 ORTHO05D006765 1.9e-42 176.4 155 64.5
Peaxi162Scf00635g00621 Petunia axillaris HOM05D005631 ORTHO05D006765 3.3e-42 175.6 175 63.4
VMungo0540G1856 Vigna mungo HOM05D005631 ORTHO05D006765 2.0e-39 166.4 117 72.6
SMO134G0149 Selaginella moellendorffii HOM05D005631 ORTHO05D006765 4.4e-39 165.2 184 51.6
AUR62001872 Chenopodium quinoa HOM05D005631 ORTHO05D006765 9.8e-39 164.1 138 68.8
AUR62009671 Chenopodium quinoa HOM05D005631 ORTHO05D006765 9.8e-39 164.1 138 69.6
BcaB01g04521 Brassica carinata HOM05D005631 ORTHO05D006765 1.6e-33 146.7 155 56.8
CiPaw.13G069500 Carya illinoinensis HOM05D005631 ORTHO05D006765 4.9e-30 135.2 107 70.1
Duzib150G1412 Durio zibethinus HOM05D005631 ORTHO05D006765 1.1e-29 134.0 116 69.8
AagrBONN_evm.TU.Sc2ySwM_117.69 Anthoceros agrestis HOM05D005631 ORTHO05D006765 5.0e-27 125.2 167 43.7
Actinidia34479 Actinidia chinensis HOM05D005631 ORTHO05D006765 1.5e-26 123.6 110 66.4
CDE09G1253 Ceratophyllum demersum HOM05D001009 ORTHO05D000829 1.5e-26 123.6 113 63.7
Sc21g0005270 Simmondsia chinensis HOM05D005631 ORTHO05D006765 8.1e-25 117.9 107 75.7
MCO05G013 Micromonas commoda HOM05D005631 ORTHO05D006765 3.4e-23 112.5 165 45.5
Sp6g20150 Schrenkiella parvula HOM05D000127 ORTHO05D007184 8.3e-22 107.8 98 63.3
Oeu008095.1 Olea europaea HOM05D005631 ORTHO05D006765 4.4e-15 85.5 59 78.0
CDE02G1786 Ceratophyllum demersum HOM05D005631 ORTHO05D006765 7.6e-15 84.7 123 46.3
Oeu008088.1 Olea europaea HOM05D005631 ORTHO05D006765 2.2e-14 83.2 45 84.4
Cc05_g02510 Coffea canephora HOM05D005631 ORTHO05D006765 4.9e-14 82.0 109 60.6
Sabra19G0122200 Salix brachista HOM05D005631 ORTHO05D006765 2.4e-13 79.7 100 52.0
MBI18_g07568_MAGBIO Magnolia biondii HOM05D005631 ORTHO05D006765 5.4e-13 78.6 59 71.2
Sabra16G0029400 Salix brachista HOM05D005631 ORTHO05D006765 2.3e-11 73.2 100 49.0
BcaC09g51457 Brassica carinata HOM05D005631 ORTHO05D006765 5.1e-11 72.0 50 78.0
A08p25520 Brassica napus HOM05D005631 ORTHO05D006765 5.1e-11 72.0 50 78.0
BcaC05g26847 Brassica carinata HOM05D005631 ORTHO05D006765 1.5e-10 70.5 50 76.0
BolC1t05347H Brassica oleracea HOM05D005631 ORTHO05D006765 1.9e-10 70.1 50 76.0
BcaC08g44597 Brassica carinata HOM05D005631 ORTHO05D006765 1.2e-09 67.4 51 76.5
A07p13430 Brassica napus HOM05D005631 ORTHO05D006765 2.8e-09 66.2 50 76.0
BcaC09g51408 Brassica carinata HOM05D005631 ORTHO05D006765 6.2e-09 65.1 50 72.0
Sabra19G0131600 Salix brachista HOM05D005631 ORTHO05D006765 6.2e-09 65.1 97 49.5
C01p12950 Brassica napus HOM05D005631 ORTHO05D006765 2.4e-08 63.2 44 77.3
C04p57300 Brassica napus HOM05D005631 ORTHO05D006765 4.0e-08 62.4 44 77.3
C01p13430 Brassica napus HOM05D005631 ORTHO05D006765 8.9e-08 61.2 44 75.0
Sabra07G0096200 Salix brachista HOM05D005274 ORTHO05D006765 8.9e-08 61.2 99 46.5
Aqoxy1G01289 Aquilegia oxysepala HOM05D005631 ORTHO05D006765 2.0e-07 60.1 40 82.5
Cre01.g044000 Chlamydomonas reinhardtii HOM05D005631 ORTHO05D006765 2.9e-06 56.2 137 37.2
Sabra08G0141900 Salix brachista HOM05D000225 ORTHO05D002520 4.9e-06 55.5 63 54.0


User provided reference genes

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