Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03920 Eucalyptus grandis HOM05D003918 ORTHO05D004494 9.3e-49 196.4 91 100.0
CiPaw.13G144800 Carya illinoinensis HOM05D003918 ORTHO05D004494 7.1e-41 170.2 87 92.0
PGR119G0927 Punica granatum HOM05D003918 ORTHO05D004494 9.3e-41 169.9 87 90.8
Eucgr.J00392 Eucalyptus grandis HOM05D003918 ORTHO05D004494 1.2e-40 169.5 87 90.8
Manes.04G012300 Manihot esculenta HOM05D003918 ORTHO05D004494 1.2e-40 169.5 87 90.8
QL01p014884 Quercus lobata HOM05D003918 ORTHO05D004494 1.6e-40 169.1 86 90.7
CiPaw.14G106800 Carya illinoinensis HOM05D003918 ORTHO05D004494 2.1e-40 168.7 87 90.8
Gohir.A05G085800 Gossypium hirsutum HOM05D003918 ORTHO05D004494 2.1e-40 168.7 87 90.8
Gohir.D05G087700 Gossypium hirsutum HOM05D003918 ORTHO05D004494 2.1e-40 168.7 87 90.8
Gorai.009G089700 Gossypium raimondii HOM05D003918 ORTHO05D004494 2.1e-40 168.7 87 90.8
TWI79G0503 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 2.1e-40 168.7 87 90.8
TWI79G0939 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 2.1e-40 168.7 87 90.8
Cc01_g10200 Coffea canephora HOM05D003918 ORTHO05D004494 2.7e-40 168.3 87 90.8
Hma1.2p1_0051F.1_g029570 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 2.7e-40 168.3 87 90.8
ClCG02G021690 Citrullus lanatus HOM05D003918 ORTHO05D004494 3.5e-40 167.9 85 92.9
Ciclev10029696m.g Citrus clementina HOM05D003918 ORTHO05D004494 3.5e-40 167.9 87 89.7
Duzib168G2331 Durio zibethinus HOM05D003918 ORTHO05D004494 3.5e-40 167.9 87 90.8
Haze_03482 Corylus avellana HOM05D003918 ORTHO05D004494 4.6e-40 167.5 87 90.8
Sed0005005 Sechium edule HOM05D003918 ORTHO05D004494 4.6e-40 167.5 84 92.9
Thecc.09G297000 Theobroma cacao HOM05D003918 ORTHO05D004494 4.6e-40 167.5 87 90.8
Glyma.11G192100 Glycine max HOM05D003918 ORTHO05D004494 6.0e-40 167.2 87 89.7
Glyma.12G082300 Glycine max HOM05D003918 ORTHO05D004494 6.0e-40 167.2 87 89.7
Lj3g0024072 Lotus japonicus HOM05D003918 ORTHO05D004494 6.0e-40 167.2 87 89.7
Phvul.011G086900 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 6.0e-40 167.2 87 89.7
TWI31G0950 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 6.0e-40 167.2 87 90.8
Nitab4.5_0000173g0230 Nicotiana tabacum HOM05D003918 ORTHO05D004494 1.0e-39 166.4 87 89.7
unitig_899.g14962 Utricularia gibba HOM05D003918 ORTHO05D004494 1.0e-39 166.4 87 89.7
Ca_10762_v3 Cicer arietinum L. HOM05D003918 ORTHO05D004494 1.3e-39 166.0 87 88.5
Lalb_Chr01g0004631 Lupinus albus HOM05D003918 ORTHO05D004494 1.3e-39 166.0 87 89.7
Sc21g0004230 Simmondsia chinensis HOM05D003918 ORTHO05D004494 1.3e-39 166.0 86 89.5
Sc21g0004490 Simmondsia chinensis HOM05D003918 ORTHO05D004494 1.3e-39 166.0 87 89.7
CSS0025262 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.8e-39 165.6 83 92.8
CSS0028017 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.8e-39 165.6 83 92.8
COL.COLO4_19215 Corchorus olitorius HOM05D003918 ORTHO05D004494 1.8e-39 165.6 87 89.7
Gohir.A07G105200 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.8e-39 165.6 87 89.7
Gohir.D07G109300 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.8e-39 165.6 87 89.7
Gorai.001G117400 Gossypium raimondii HOM05D003918 ORTHO05D004494 1.8e-39 165.6 87 89.7
Medtr4g057040 Medicago truncatula HOM05D003918 ORTHO05D004494 1.8e-39 165.6 87 88.5
Peaxi162Scf00983g00019 Petunia axillaris HOM05D003918 ORTHO05D004494 1.8e-39 165.6 87 89.7
TAR633G2652 Trochodendron aralioides HOM05D003918 ORTHO05D004494 1.8e-39 165.6 87 89.7
CAN.G546.56 Capsicum annuum HOM05D003918 ORTHO05D004494 2.3e-39 165.2 87 88.5
MELO3C026958.2 Cucumis melo HOM05D003918 ORTHO05D004494 2.3e-39 165.2 85 90.6
GSVIVG01031454001 Vitis vinifera HOM05D003918 ORTHO05D004494 2.3e-39 165.2 87 89.7
ClCG01G013880 Citrullus lanatus HOM05D003918 ORTHO05D004494 3.0e-39 164.9 87 87.4
Sopen11g026220 Solanum pennellii HOM05D003918 ORTHO05D004494 3.9e-39 164.5 87 88.5
PGSC0003DMG402000458 Solanum tuberosum HOM05D003918 ORTHO05D004494 3.9e-39 164.5 87 88.5
Psat0ss2518g0280 Pisum sativum HOM05D003918 ORTHO05D004494 5.1e-39 164.1 87 87.4
CSS0003214 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 6.7e-39 163.7 87 88.5
CSS0049251 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 6.7e-39 163.7 87 88.5
CsaV3_1G014150 Cucumis sativus L. HOM05D003918 ORTHO05D004494 6.7e-39 163.7 87 88.5
Nitab4.5_0003880g0020 Nicotiana tabacum HOM05D003918 ORTHO05D004494 6.7e-39 163.7 90 85.6
Lj1A213T32 Lonicera japonica HOM05D003918 ORTHO05D004494 8.7e-39 163.3 87 87.4
Aa31LG5G8120 Aethionema arabicum HOM05D003918 ORTHO05D004494 1.1e-38 162.9 87 89.7
Oeu008363.1 Olea europaea HOM05D003918 ORTHO05D004494 1.1e-38 162.9 86 86.0
Rhsim01G0210200 Rhododendron simsii HOM05D003918 ORTHO05D004494 1.1e-38 162.9 87 87.4
Hund00834 Selenicereus undatus HOM05D003918 ORTHO05D004494 1.1e-38 162.9 85 90.6
DCAR_018757 Daucus carota HOM05D003918 ORTHO05D004494 1.5e-38 162.5 87 87.4
Aqoxy1G01058 Aquilegia oxysepala HOM05D003918 ORTHO05D004494 1.9e-38 162.2 87 88.5
AL4G22250 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 1.9e-38 162.2 81 92.6
Dinv16240 Davidia involucrata HOM05D003918 ORTHO05D004494 1.9e-38 162.2 82 91.5
THA.LOC104826394 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 1.9e-38 162.2 87 87.4
AT2G27960 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 2.5e-38 161.8 81 91.4
Nn2g13876 Nelumbo nucifera HOM05D003918 ORTHO05D004494 2.5e-38 161.8 87 86.2
Oeu040442.1 Olea europaea HOM05D003918 ORTHO05D004494 2.5e-38 161.8 87 86.2
TAR623G0966 Trochodendron aralioides HOM05D003918 ORTHO05D004494 3.3e-38 161.4 88 88.6
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 4.3e-38 161.0 82 91.5
CAN.G246.3 Capsicum annuum HOM05D003918 ORTHO05D004494 4.3e-38 161.0 86 86.0
FvH4_3g30520 Fragaria vesca HOM05D003918 ORTHO05D004494 4.3e-38 161.0 79 93.7
FAN11G2739 Fragaria x ananassa HOM05D003918 ORTHO05D004494 4.3e-38 161.0 79 93.7
FAN21G0274 Fragaria x ananassa HOM05D003918 ORTHO05D004494 4.3e-38 161.0 79 93.7
FAN25G0673 Fragaria x ananassa HOM05D003918 ORTHO05D004494 4.3e-38 161.0 79 93.7
Manes.11G152900 Manihot esculenta HOM05D003918 ORTHO05D004494 4.3e-38 161.0 79 93.7
RcHm_v2.0_Chr5g0056481 Rosa chinensis HOM05D003918 ORTHO05D004494 4.3e-38 161.0 79 93.7
HPP92_026243 Vanilla planifolia HOM05D003918 ORTHO05D004494 4.3e-38 161.0 77 96.1
Dinv29385 Davidia involucrata HOM05D003918 ORTHO05D004494 5.6e-38 160.6 88 87.5
MD03G1128000 Malus domestica HOM05D003918 ORTHO05D004494 5.6e-38 160.6 87 87.4
MD11G1149400 Malus domestica HOM05D003918 ORTHO05D004494 5.6e-38 160.6 87 87.4
vmacro03250 Vaccinium macrocarpon HOM05D003918 ORTHO05D004494 5.6e-38 160.6 80 92.5
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 7.4e-38 160.2 80 92.5
Sp4g10790 Schrenkiella parvula HOM05D003918 ORTHO05D004494 7.4e-38 160.2 87 88.5
Zm00001eb402980 Zea mays HOM05D003918 ORTHO05D004494 7.4e-38 160.2 79 93.7
BcaB03g11846 Brassica carinata HOM05D003918 ORTHO05D004494 9.6e-38 159.8 87 86.2
BraA08t33664Z Brassica rapa HOM05D003918 ORTHO05D004494 9.6e-38 159.8 87 85.1
Cpa.g.sc47.8 Carica papaya HOM05D003918 ORTHO05D004494 9.6e-38 159.8 87 85.1
TAR369G0366 Trochodendron aralioides HOM05D003918 ORTHO05D004494 9.6e-38 159.8 87 85.1
CARHR120670 Cardamine hirsuta HOM05D003918 ORTHO05D004494 1.3e-37 159.5 81 90.1
Prupe.6G113800 Prunus persica HOM05D003918 ORTHO05D004494 1.3e-37 159.5 87 89.7
PGSC0003DMG400018822 Solanum tuberosum HOM05D003918 ORTHO05D004494 1.3e-37 159.5 87 87.4
CANSAT64G2716 Cannabis sativa HOM05D003918 ORTHO05D004494 1.6e-37 159.1 79 93.7
Carub.0004s0872 Capsella rubella HOM05D003918 ORTHO05D004494 1.6e-37 159.1 81 91.4
Sed0024739 Sechium edule HOM05D003918 ORTHO05D004494 1.6e-37 159.1 87 88.5
BcaC01g00919 Brassica carinata HOM05D003918 ORTHO05D004494 2.8e-37 158.3 87 87.4
ECA233G3711 Erigeron canadensis HOM05D003918 ORTHO05D004494 2.8e-37 158.3 87 83.9
HanXRQChr11g0346091 Helianthus annuus HOM05D003918 ORTHO05D004494 2.8e-37 158.3 80 91.2
MBI17_g16530_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 2.8e-37 158.3 84 89.3
Oeu007724.1 Olea europaea HOM05D003918 ORTHO05D004494 2.8e-37 158.3 80 92.5
EL10Ac9g21015 Beta vulgaris HOM05D003918 ORTHO05D004494 3.7e-37 157.9 80 92.5
DCAR_015501 Daucus carota HOM05D003918 ORTHO05D004494 3.7e-37 157.9 80 92.5
Oeu000602.1 Olea europaea HOM05D003918 ORTHO05D004494 3.7e-37 157.9 87 87.4
CDE09G0194 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 4.8e-37 157.5 80 90.0
Thhalv10017487m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 4.8e-37 157.5 87 87.4
Oeu007309.2 Olea europaea HOM05D003918 ORTHO05D004494 4.8e-37 157.5 88 85.2
Rhsim13G0101600 Rhododendron simsii HOM05D003918 ORTHO05D004494 4.8e-37 157.5 80 91.2
A08p17020 Brassica napus HOM05D003918 ORTHO05D004494 8.1e-37 156.8 87 83.9
AUR62041324 Chenopodium quinoa HOM05D003918 ORTHO05D004494 8.1e-37 156.8 80 90.0
HanXRQChr01g0019451 Helianthus annuus HOM05D003918 ORTHO05D004494 8.1e-37 156.8 80 90.0
Lsat_1_v5_gn_1_64981 Lactuca sativa HOM05D003918 ORTHO05D004494 8.1e-37 156.8 80 90.0
Potri.009G004000 Populus trichocarpa HOM05D003918 ORTHO05D004494 8.1e-37 156.8 77 92.2
SalBow6G1569 Salvia bowleyana HOM05D003918 ORTHO05D004494 8.1e-37 156.8 80 90.0
PSO339G4781 Papaver somniferum HOM05D003918 ORTHO05D004494 1.1e-36 156.4 79 91.1
THA.LOC104815736 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 1.1e-36 156.4 76 92.1
ECA248G3596 Erigeron canadensis HOM05D003918 ORTHO05D004494 1.4e-36 156.0 80 90.0
Sabra09G0001700 Salix brachista HOM05D003918 ORTHO05D004494 1.4e-36 156.0 77 92.2
Ah.01g016010 Amaranthus hybridus HOM05D003918 ORTHO05D004494 2.4e-36 155.2 87 82.8
MELO3C004864.2 Cucumis melo HOM05D003918 ORTHO05D004494 3.1e-36 154.8 95 80.0
Carub.0004s0873 Capsella rubella HOM05D003918 ORTHO05D004494 4.0e-36 154.5 87 85.1
FAN16G1510 Fragaria x ananassa HOM05D003918 ORTHO05D004494 4.0e-36 154.5 85 87.1
Potri.004G217500 Populus trichocarpa HOM05D003918 ORTHO05D004494 4.0e-36 154.5 76 93.4
AL4G22230 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 5.3e-36 154.1 80 91.2
AT2G27970 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 5.3e-36 154.1 80 91.2
Migut.D02301 Erythranthe guttata HOM05D003918 ORTHO05D004494 5.3e-36 154.1 80 90.0
PGR102G3373 Punica granatum HOM05D003918 ORTHO05D004494 5.3e-36 154.1 74 94.6
C03p85930 Brassica napus HOM05D003918 ORTHO05D004494 6.9e-36 153.7 89 82.0
Thhalv10017678m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 6.9e-36 153.7 87 83.9
Os03g0146300 Oryza sativa ssp. japonica HOM05D003918 ORTHO05D004494 6.9e-36 153.7 73 95.9
Zm00001eb003750 Zea mays HOM05D003918 ORTHO05D004494 6.9e-36 153.7 87 81.6
Lalb_Chr03g0027731 Lupinus albus HOM05D003918 ORTHO05D004494 9.0e-36 153.3 80 90.0
PSO801G0480 Papaver somniferum HOM05D003918 ORTHO05D004494 1.5e-35 152.5 80 85.0
SEGI_17224 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 1.5e-35 152.5 76 89.5
Lsat_1_v5_gn_6_43541 Lactuca sativa HOM05D003918 ORTHO05D004494 2.0e-35 152.1 79 87.3
ATR0043G026 Amborella trichopoda HOM05D003918 ORTHO05D004494 3.4e-35 151.4 80 86.2
CARHR120680 Cardamine hirsuta HOM05D003918 ORTHO05D004494 3.4e-35 151.4 76 90.8
SEGI_19027 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 5.8e-35 150.6 75 88.0
Hma1.2p1_0772F.1_g215980 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 7.6e-35 150.2 96 78.1
PSO339G2710 Papaver somniferum HOM05D003918 ORTHO05D004494 1.7e-34 149.1 74 89.2
SMO116G0276 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 1.7e-34 149.1 80 85.0
Pp3c14_11680 Physcomitrium patens HOM05D003918 ORTHO05D004494 2.2e-34 148.7 79 86.1
Pp3c2_6200 Physcomitrium patens HOM05D003918 ORTHO05D004494 2.2e-34 148.7 79 86.1
Lalb_Chr19g0136871 Lupinus albus HOM05D003918 ORTHO05D004494 2.9e-34 148.3 73 93.2
Mapoly0001s0011 Marchantia polymorpha HOM05D003918 ORTHO05D004494 6.4e-34 147.1 82 85.4
SalBow3G4245 Salvia bowleyana HOM05D003918 ORTHO05D004494 8.4e-34 146.7 75 89.3
BcaB06g28178 Brassica carinata HOM05D003918 ORTHO05D004494 1.9e-33 145.6 72 91.7
BcaC02g08219 Brassica carinata HOM05D003918 ORTHO05D004494 7.1e-33 143.7 78 84.6
A04p21230 Brassica napus HOM05D003918 ORTHO05D004494 7.1e-33 143.7 78 84.6
C04p57080 Brassica napus HOM05D003918 ORTHO05D004494 7.1e-33 143.7 78 84.6
BolC4t27242H Brassica oleracea HOM05D003918 ORTHO05D004494 7.1e-33 143.7 78 84.6
Glyma.12G083700 Glycine max HOM05D003918 ORTHO05D004494 9.3e-33 143.3 81 86.4
Phvul.011G088400 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 1.2e-32 142.9 80 80.0
Cre03.g180350 Chlamydomonas reinhardtii HOM05D003918 ORTHO05D004494 1.6e-32 142.5 75 84.0
PRCOL_00005401 Prasinoderma coloniale HOM05D003918 ORTHO05D004494 3.9e-31 137.9 80 76.2
CsaV3_6G014430 Cucumis sativus L. HOM05D003918 ORTHO05D004494 1.6e-29 132.5 70 87.1
CDE02G4651 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 1.8e-28 129.0 80 81.2
MBI16_g13165_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 2.4e-28 128.6 89 69.7
MCO11G605 Micromonas commoda HOM05D003918 ORTHO05D004494 3.1e-28 128.3 66 84.8
SMO367G0337 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 4.0e-28 127.9 69 78.3
Zm00001eb012500 Zea mays HOM05D003918 ORTHO05D004494 4.5e-27 124.4 60 93.3
SEGI_02290 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 7.6e-27 123.6 61 90.2
CBR_g2791 Chara braunii HOM05D003918 ORTHO05D004494 2.5e-25 118.6 60 85.0
MBI11_g44590_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 6.0e-24 114.0 63 81.0
BcaB02g10127 Brassica carinata HOM05D003918 ORTHO05D004494 2.4e-20 102.1 56 82.1
Actinidia24153 Actinidia chinensis HOM05D003918 ORTHO05D004494 1.0e-18 96.7 53 86.8
TPR.G31695 Trifolium pratense HOM05D003918 ORTHO05D004494 2.2e-18 95.5 46 95.7
ATR0760G002 Amborella trichopoda HOM05D003918 ORTHO05D004494 2.1e-16 89.0 52 78.8
Thecc.08G095400 Theobroma cacao HOM05D003918 ORTHO05D004494 7.9e-16 87.0 66 63.6
Actinidia03687 Actinidia chinensis HOM05D003918 ORTHO05D004494 1.9e-14 82.4 42 88.1
Nn2g10486 Nelumbo nucifera HOM05D003918 ORTHO05D004494 5.7e-14 80.9 38 92.1
AagrBONN_evm.TU.Sc2ySwM_117.701 Anthoceros agrestis HOM05D005424 ORTHO05D006726 1.3e-13 79.7 44 79.5
CSS0021242 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 4.8e-13 77.8 67 61.2
BcaC05g28675 Brassica carinata HOM05D003918 ORTHO05D004494 1.1e-12 76.6 45 73.3
BolC5t33525H Brassica oleracea HOM05D003918 ORTHO05D004494 1.1e-12 76.6 45 73.3
CSS0049200 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.1e-12 76.6 39 84.6
Zm00001eb191010 Zea mays HOM05D003918 ORTHO05D004494 6.9e-12 73.9 76 52.6
Nn6g35195 Nelumbo nucifera HOM05D003918 ORTHO05D004494 3.4e-11 71.6 35 94.3
Migut.N02540 Erythranthe guttata HOM05D003918 ORTHO05D004494 5.9e-11 70.9 45 77.8
SGA_v2.0_scaffold50G18575 Striga asiatica HOM05D003918 ORTHO05D004494 1.3e-10 69.7 51 68.6
Ah.03g143830 Amaranthus hybridus HOM05D003918 ORTHO05D004494 6.5e-10 67.4 36 88.9
Nn4g23314 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.2e-08 63.2 29 89.7
Gohir.A02G090001 Gossypium hirsutum HOM05D003918 ORTHO05D004494 4.7e-08 61.2 36 80.6
Nn1g02037 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.4e-07 59.7 49 57.1
Ah.09g226860 Amaranthus hybridus HOM05D003918 ORTHO05D004494 8.8e-07 57.0 36 80.6


User provided reference genes

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