Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1932.1 1016 100.0
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1339.3 1017 71.2
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1331.6 999 71.2
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1323.5 1021 70.9
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1318.9 1019 70.8
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1301.2 1011 69.2
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1296.2 1015 69.0
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1293.5 1027 69.2
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1283.5 1012 68.6
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1281.9 1017 68.6
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1279.6 1014 68.9
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1278.8 1009 69.5
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1277.7 1012 68.1
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1277.3 1011 68.2
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1275.4 1009 68.0
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1274.6 1022 67.5
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1274.2 1024 68.2
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1269.2 1006 69.0
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1266.5 1013 68.0
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1266.1 1018 67.7
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1264.6 1015 68.1
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1263.8 1019 67.6
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1262.3 1011 68.9
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1260.7 1023 67.5
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1251.5 1025 67.7
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1248.0 1012 66.9
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1247.6 1011 68.3
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1244.6 1005 67.4
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1244.6 1034 67.2
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1241.9 1017 66.5
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1239.2 1023 66.2
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1238.8 1015 66.0
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1235.7 1021 66.6
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1235.3 1005 66.7
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1235.3 1032 66.1
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1232.2 1010 66.3
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1228.4 1012 65.5
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1226.5 1017 66.3
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1224.5 1004 65.6
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1221.8 1018 66.4
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1220.3 1010 65.2
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1218.0 1011 65.8
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1217.2 1017 66.2
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1208.7 1006 65.2
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1204.9 1022 65.1
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1203.0 1011 65.3
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1196.0 1020 65.6
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1184.1 1020 64.5
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1177.9 1026 63.8
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1177.5 989 66.4
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1175.6 1021 64.4
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1174.1 1022 64.3
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1165.6 1017 64.2
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1162.1 1024 63.8
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1161.4 1013 65.2
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1161.4 1022 63.0
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1158.3 1030 63.1
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1156.0 1021 62.8
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1149.8 979 66.7
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1147.5 1058 60.9
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1145.2 1023 63.1
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1134.8 1018 63.0
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1134.8 968 64.6
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1133.6 976 63.2
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1131.7 989 63.7
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1131.3 968 64.3
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1130.5 1019 61.8
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1126.3 987 63.7
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1125.9 1020 61.8
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 0.0e+00 1120.1 1036 61.2
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1118.2 975 64.1
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 0.0e+00 1114.8 960 64.4
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1108.6 1030 60.9
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1108.2 1027 60.1
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1105.5 1018 60.9
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1100.9 972 62.9
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1097.4 1017 60.5
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1089.3 972 62.7
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 0.0e+00 1088.6 1164 55.2
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1083.9 1019 59.5
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1083.2 971 62.3
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1078.2 973 62.1
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 1.4e-311 1073.2 972 62.1
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 1.4e-311 1072.8 966 61.7
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 1.2e-306 1056.6 966 61.5
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 3.0e-305 1052.0 1025 57.8
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 1.3e-297 1026.5 1023 57.8
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 4.0e-294 1015.0 966 59.0
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 6.9e-294 1014.2 934 61.0
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 1.1e-286 990.3 978 58.0
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 2.2e-279 966.1 815 63.7
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 8.2e-279 964.1 887 62.8
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 2.4e-278 962.6 821 63.8
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 6.9e-278 961.1 984 55.9
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 1.3e-276 956.8 967 55.1
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 1.9e-275 953.0 1010 55.6
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 2.2e-271 939.5 1232 49.1
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 1.4e-267 926.8 827 62.5
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 2.7e-266 922.5 987 55.9
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 8.5e-260 901.0 938 55.1
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 6.7e-257 891.3 1009 53.7
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 7.2e-243 844.7 975 52.4
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 2.6e-240 836.3 792 61.6
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 1.4e-222 777.3 972 50.3
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 1.4e-222 777.3 894 54.4
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 2.3e-217 760.0 781 58.0
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 4.0e-217 759.2 894 53.2
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 1.2e-181 641.3 650 58.6
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 3.3e-179 633.3 1016 39.9
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 5.3e-177 625.9 1019 38.6
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.2e-176 624.8 1000 39.2
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 2.6e-176 623.6 981 39.0
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.3e-175 621.3 433 75.1
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 2.2e-175 620.5 430 75.1
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 4.9e-175 619.4 1017 38.3
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 6.5e-159 565.8 924 37.1
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 2.3e-156 557.4 585 54.5
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 1.5e-139 501.5 537 54.6
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 3.0e-132 477.2 410 65.4
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.6e-128 464.9 402 61.4
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 1.7e-127 461.5 426 60.6
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.4e-121 441.8 344 66.6
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 5.9e-120 436.4 400 59.8
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 1.7e-106 391.7 343 60.6
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 2.8e-101 374.4 647 37.6
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 6.4e-98 363.2 825 32.2
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 3.3e-94 350.9 412 49.5
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 9.3e-81 306.2 249 67.9
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 8.7e-79 299.7 361 50.7
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 1.9e-70 271.9 544 36.6
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 2.5e-70 271.6 193 72.5
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 3.1e-52 211.5 167 70.1
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 3.1e-52 211.5 167 70.1
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 3.8e-50 204.5 111 87.4
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 5.0e-50 204.1 139 80.6
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 6.1e-48 197.2 979 23.7
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 3.9e-47 194.5 472 34.3
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 5.3e-44 184.1 140 70.7
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 5.9e-43 180.6 131 64.1
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.2e-40 172.9 132 72.0
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 6.1e-40 170.6 129 72.1
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 1.1e-36 159.8 840 22.6
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 4.1e-36 157.9 132 66.7
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 2.6e-35 155.2 235 40.9
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 2.7e-32 145.2 135 57.0
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 2.0e-30 139.0 112 67.9
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 3.7e-29 134.8 71 85.9
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 2.0e-27 129.0 188 45.2
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 8.5e-26 123.6 293 27.6
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 3.2e-25 121.7 154 48.1
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.2e-24 119.8 88 75.0
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 1.5e-22 112.8 115 54.8
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 2.8e-21 108.6 95 61.1
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 4.8e-21 107.8 102 58.8
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 1.4e-20 106.3 120 55.0
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 2.4e-20 105.5 85 60.0
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 1.4e-15 89.7 87 51.7
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 1.8e-15 89.4 54 68.5
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 1.3e-13 83.2 121 40.5
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 5.4e-12 77.8 128 37.5
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 1.6e-11 76.3 77 54.5
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 8.6e-10 70.5 59 62.7
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 3.6e-08 65.1 67 47.8
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 3.6e-08 65.1 43 69.8
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 5.7e-06 57.8 45 60.0
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 7.5e-06 57.4 45 55.6


User provided reference genes

Program Settings