Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03796 Eucalyptus grandis HOM05D004148 ORTHO05D004709 3.5e-67 258.1 124 100.0
Psat4g228400 Pisum sativum HOM05D004148 ORTHO05D004709 1.8e-15 86.3 70 62.9
Cfa010235 Carpinus fangiana HOM05D004148 ORTHO05D004709 2.4e-15 85.9 70 60.0
Ca_24340_v3 Cicer arietinum L. HOM05D004148 ORTHO05D004709 9.1e-15 84.0 70 60.0
Duzib168G1551 Durio zibethinus HOM05D004148 ORTHO05D004709 2.0e-14 82.8 70 58.6
FvH4_3g27030 Fragaria vesca HOM05D004148 ORTHO05D004709 2.0e-14 82.8 70 58.6
FvH4_4g33990 Fragaria vesca HOM05D004148 ORTHO05D004709 2.0e-14 82.8 70 58.6
FAN11G3429 Fragaria x ananassa HOM05D004148 ORTHO05D004709 2.0e-14 82.8 70 58.6
FAN12G2472 Fragaria x ananassa HOM05D004148 ORTHO05D004709 2.0e-14 82.8 70 58.6
FAN17G2621 Fragaria x ananassa HOM05D004148 ORTHO05D004709 2.0e-14 82.8 70 58.6
FAN22G0787 Fragaria x ananassa HOM05D004148 ORTHO05D004709 2.0e-14 82.8 70 58.6
Thecc.09G266000 Theobroma cacao HOM05D004148 ORTHO05D004709 2.7e-14 82.4 70 60.0
Phvul.002G053700 Phaseolus vulgaris HOM05D004148 ORTHO05D004709 3.5e-14 82.0 70 61.4
RcHm_v2.0_Chr5g0049541 Rosa chinensis HOM05D004148 ORTHO05D004709 3.5e-14 82.0 70 58.6
CANSAT54G2785 Cannabis sativa HOM05D004148 ORTHO05D004709 4.5e-14 81.6 81 54.3
PGR102G2778 Punica granatum HOM05D004148 ORTHO05D004709 5.9e-14 81.3 58 67.2
Glyma.01G244400 Glycine max HOM05D004148 ORTHO05D004709 7.7e-14 80.9 70 60.0
MD11G1178600 Malus domestica HOM05D004148 ORTHO05D004709 7.7e-14 80.9 70 55.7
Gohir.A05G076400 Gossypium hirsutum HOM05D004148 ORTHO05D004709 1.0e-13 80.5 70 57.1
Gorai.009G080700 Gossypium raimondii HOM05D004148 ORTHO05D004709 1.0e-13 80.5 70 57.1
Lj1g0011831 Lotus japonicus HOM05D004148 ORTHO05D004709 1.0e-13 80.5 70 58.6
Prupe.6G151400 Prunus persica HOM05D004148 ORTHO05D004709 1.3e-13 80.1 74 54.1
Carub.0005s0948 Capsella rubella HOM05D004148 ORTHO05D004709 5.0e-13 78.2 74 59.5
MBI11_g07705_MAGBIO Magnolia biondii HOM05D004148 ORTHO05D004709 5.0e-13 78.2 70 55.7
Atru.chr3.3014 Acer truncatum HOM05D004148 ORTHO05D004709 6.5e-13 77.8 70 57.1
Carub.0005s0933 Capsella rubella HOM05D004148 ORTHO05D004709 6.5e-13 77.8 74 59.5
Potri.009G153300 Populus trichocarpa HOM05D004148 ORTHO05D004709 6.5e-13 77.8 70 58.6
Aqoxy1G00551 Aquilegia oxysepala HOM05D004148 ORTHO05D004709 1.1e-12 77.0 54 63.0
MSTRG.21311 Avicennia marina HOM05D004148 ORTHO05D004709 3.2e-12 75.5 61 55.7
TWI60G0836 Tripterygium wilfordii HOM05D004148 ORTHO05D004709 3.2e-12 75.5 70 54.3
Migut.D00721 Erythranthe guttata HOM05D004148 ORTHO05D004709 4.2e-12 75.1 69 55.1
Nn2g14486 Nelumbo nucifera HOM05D004148 ORTHO05D004709 4.2e-12 75.1 70 55.7
Lalb_Chr16g0376251 Lupinus albus HOM05D004148 ORTHO05D004709 5.5e-12 74.7 53 67.9
Medtr5g004880 Medicago truncatula HOM05D004148 ORTHO05D004709 5.5e-12 74.7 69 59.4
Sp5g17550 Schrenkiella parvula HOM05D004148 ORTHO05D004709 5.5e-12 74.7 74 56.8
TAR623G1397 Trochodendron aralioides HOM05D004148 ORTHO05D004709 5.5e-12 74.7 70 55.7
CARHR148460 Cardamine hirsuta HOM05D004148 ORTHO05D004709 7.2e-12 74.3 53 69.8
Ciclev10027694m.g Citrus clementina HOM05D004148 ORTHO05D004709 7.2e-12 74.3 70 54.3
CSS0002631 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 9.4e-12 73.9 69 52.2
CSS0019415 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 9.4e-12 73.9 69 52.2
Manes.04G054800 Manihot esculenta HOM05D004148 ORTHO05D004709 2.1e-11 72.8 70 54.3
vmacro04062 Vaccinium macrocarpon HOM05D004148 ORTHO05D004709 2.1e-11 72.8 72 52.8
Dinv32838 Davidia involucrata HOM05D004148 ORTHO05D004709 2.7e-11 72.4 69 53.6
EL10Ac7g16248 Beta vulgaris HOM05D004148 ORTHO05D004709 4.7e-11 71.6 81 51.9
BraA06t25067Z Brassica rapa HOM05D004148 ORTHO05D004709 4.7e-11 71.6 74 54.1
Thhalv10002374m.g Eutrema salsugineum HOM05D004148 ORTHO05D004709 6.1e-11 71.2 74 55.4
GSVIVG01022379001 Vitis vinifera HOM05D004148 ORTHO05D004709 6.1e-11 71.2 70 51.4
CiPaw.13G126900 Carya illinoinensis HOM05D004148 ORTHO05D004709 8.0e-11 70.9 70 52.9
AL5G21540 Arabidopsis lyrata HOM05D004148 ORTHO05D004709 1.4e-10 70.1 74 54.1
A06p19850 Brassica napus HOM05D004148 ORTHO05D004709 1.4e-10 70.1 52 65.4
BcaC01g01775 Brassica carinata HOM05D004148 ORTHO05D004709 2.3e-10 69.3 74 51.4
C03p72000 Brassica napus HOM05D004148 ORTHO05D004709 2.3e-10 69.3 74 51.4
BolC3t19498H Brassica oleracea HOM05D004148 ORTHO05D004709 2.3e-10 69.3 74 51.4
ClCG05G010880 Citrullus lanatus HOM05D004148 ORTHO05D004709 3.0e-10 68.9 52 59.6
Oeu048810.1 Olea europaea HOM05D004148 ORTHO05D004709 3.0e-10 68.9 69 50.7
SalBow6G3333 Salvia bowleyana HOM05D004148 ORTHO05D004709 3.0e-10 68.9 45 71.1
PSO339G2294 Papaver somniferum HOM05D004148 ORTHO05D004709 4.0e-10 68.6 70 54.3
Actinidia12896 Actinidia chinensis HOM05D001400 ORTHO05D001795 5.2e-10 68.2 69 50.7
CARHR108680 Cardamine hirsuta HOM05D004148 ORTHO05D004709 5.2e-10 68.2 52 63.5
CARHR108980 Cardamine hirsuta HOM05D004148 ORTHO05D004709 5.2e-10 68.2 52 63.5
Rhsim13G0199700 Rhododendron simsii HOM05D004148 ORTHO05D004709 5.2e-10 68.2 69 52.2
BcaC01g02217 Brassica carinata HOM05D004148 ORTHO05D004709 6.8e-10 67.8 48 64.6
BcaB01g00875 Brassica carinata HOM05D004148 ORTHO05D004709 8.8e-10 67.4 52 65.4
BcaB02g10777 Brassica carinata HOM05D004148 ORTHO05D004709 8.8e-10 67.4 48 64.6
Cpa.g.sc103.96 Carica papaya HOM05D004148 ORTHO05D004709 8.8e-10 67.4 69 50.7
SGA_v2.0_scaffold29G12109 Striga asiatica HOM05D004148 ORTHO05D004709 8.8e-10 67.4 59 55.9
Cc00_g06190 Coffea canephora HOM05D004148 ORTHO05D004709 1.5e-09 66.6 56 58.9
THA.LOC104815063 Tarenaya hassleriana HOM05D004148 ORTHO05D004709 1.5e-09 66.6 70 55.7
PSO384G5014 Papaver somniferum HOM05D004148 ORTHO05D004709 2.6e-09 65.9 70 52.9
Sed0012220 Sechium edule HOM05D004148 ORTHO05D004709 2.6e-09 65.9 52 55.8
Ah.15g099170 Amaranthus hybridus HOM05D004148 ORTHO05D004709 3.4e-09 65.5 70 48.6
AT3G43610 Arabidopsis thaliana HOM05D004148 ORTHO05D004709 5.7e-09 64.7 53 64.2
Aa31LG4G13420 Aethionema arabicum HOM05D004148 ORTHO05D004709 9.8e-09 63.9 74 50.0
Peaxi162Scf00217g00627 Petunia axillaris HOM05D004148 ORTHO05D004709 9.8e-09 63.9 47 68.1
Sc06g0008560 Simmondsia chinensis HOM05D004148 ORTHO05D004709 1.3e-08 63.5 53 58.5
Nitab4.5_0005222g0040 Nicotiana tabacum HOM05D004148 ORTHO05D004709 1.7e-08 63.2 47 66.0
Solyc11g071570.3 Solanum lycopersicum HOM05D004148 ORTHO05D004709 1.7e-08 63.2 47 63.8
Sopen11g029250 Solanum pennellii HOM05D004148 ORTHO05D004709 1.7e-08 63.2 47 66.0
CsaV3_3G017640 Cucumis sativus L. HOM05D004148 ORTHO05D004709 2.8e-08 62.4 52 51.9
Hund18819 Selenicereus undatus HOM05D004148 ORTHO05D004709 2.8e-08 62.4 70 47.1
AUR62001591 Chenopodium quinoa HOM05D004148 ORTHO05D004709 4.9e-08 61.6 48 60.4
AUR62020189 Chenopodium quinoa HOM05D004148 ORTHO05D004709 4.9e-08 61.6 75 48.0
MELO3C020298.2 Cucumis melo HOM05D004148 ORTHO05D004709 4.9e-08 61.6 52 53.8
Zm00001eb073760 Zea mays HOM05D004148 ORTHO05D004709 4.9e-08 61.6 81 39.5
Zm00001eb428880 Zea mays HOM05D004148 ORTHO05D004709 4.9e-08 61.6 81 40.7
CDE07G1769 Ceratophyllum demersum HOM05D004148 ORTHO05D004709 1.1e-07 60.5 47 55.3
TPR.G26857 Trifolium pratense HOM05D004148 ORTHO05D004709 1.1e-07 60.5 53 56.6
CAN.G439.18 Capsicum annuum HOM05D004148 ORTHO05D004709 1.4e-07 60.1 47 63.8
AUR62038878 Chenopodium quinoa HOM05D000413 ORTHO05D004709 1.4e-07 60.1 75 46.7
unitig_21.g20311 Utricularia gibba HOM05D004148 ORTHO05D004709 2.4e-07 59.3 46 58.7
arahy.Tifrunner.gnm1.ann1.JMUS5L Arachis hypogaea HOM05D004148 ORTHO05D004709 3.1e-07 58.9 64 48.4
ATR0697G020 Amborella trichopoda HOM05D004148 ORTHO05D004709 5.4e-07 58.2 48 56.2
HanXRQChr03g0089821 Helianthus annuus HOM05D004148 ORTHO05D004709 1.2e-06 57.0 49 55.1
VMungo1215G0285 Vigna mungo HOM05D004148 ORTHO05D004709 5.9e-06 54.7 52 53.8
VMungo1215G1724 Vigna mungo HOM05D004148 ORTHO05D004709 5.9e-06 54.7 52 53.8
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 7.7e-06 54.3 60 43.3


User provided reference genes

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