Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03666 Eucalyptus grandis HOM05D006389 ORTHO05D007863 7.7e-163 577.0 278 100.0
Cfa005620 Carpinus fangiana HOM05D006389 ORTHO05D007863 1.5e-94 350.1 285 57.2
CiPaw.14G122900 Carya illinoinensis HOM05D006389 ORTHO05D007863 7.6e-94 347.8 285 57.5
Nn7g36087 Nelumbo nucifera HOM05D006389 ORTHO05D007863 2.9e-93 345.9 285 56.1
Manes.06G168100 Manihot esculenta HOM05D006389 ORTHO05D007863 3.8e-93 345.5 289 56.7
PGR102G3332 Punica granatum HOM05D006389 ORTHO05D007863 5.4e-92 341.7 288 56.6
Sed0000566 Sechium edule HOM05D006389 ORTHO05D007863 1.6e-91 340.1 285 58.2
CsaV3_1G042620 Cucumis sativus L. HOM05D006389 ORTHO05D007863 3.5e-91 339.0 283 59.4
Atru.chr3.2543 Acer truncatum HOM05D006389 ORTHO05D007863 4.6e-91 338.6 284 58.1
QL01p005900 Quercus lobata HOM05D006389 ORTHO05D007863 1.8e-90 336.7 283 56.9
COL.COLO4_24825 Corchorus olitorius HOM05D006389 ORTHO05D007863 2.3e-90 336.3 285 57.5
MD11G1027100 Malus domestica HOM05D006389 ORTHO05D007863 2.3e-90 336.3 285 56.1
ClCG03G013410 Citrullus lanatus HOM05D006389 ORTHO05D007863 3.0e-90 335.9 286 58.0
Potri.001G016800 Populus trichocarpa HOM05D006389 ORTHO05D007863 5.1e-90 335.1 288 55.6
MELO3C015208.2 Cucumis melo HOM05D006389 ORTHO05D007863 8.7e-90 334.3 284 58.8
Prupe.6G021400 Prunus persica HOM05D006389 ORTHO05D007863 8.7e-90 334.3 285 56.8
Gohir.D09G111800 Gossypium hirsutum HOM05D006389 ORTHO05D007863 1.1e-89 334.0 282 56.4
Gorai.006G129600 Gossypium raimondii HOM05D006389 ORTHO05D007863 1.1e-89 334.0 282 56.4
Gohir.A09G115200 Gossypium hirsutum HOM05D006389 ORTHO05D007863 2.5e-89 332.8 282 56.4
Sabra01G0011800 Salix brachista HOM05D006389 ORTHO05D007863 4.3e-89 332.0 283 54.8
TAR623G0704 Trochodendron aralioides HOM05D006389 ORTHO05D007863 4.3e-89 332.0 289 55.7
FvH4_3g43320 Fragaria vesca HOM05D006389 ORTHO05D007863 5.6e-89 331.6 284 57.4
FAN11G1995 Fragaria x ananassa HOM05D006389 ORTHO05D007863 5.6e-89 331.6 284 57.4
FAN25G0313 Fragaria x ananassa HOM05D006389 ORTHO05D007863 7.4e-89 331.3 284 57.4
RcHm_v2.0_Chr5g0077431 Rosa chinensis HOM05D006389 ORTHO05D007863 1.6e-88 330.1 284 56.0
COL.COLO4_26371 Corchorus olitorius HOM05D006389 ORTHO05D007863 3.7e-88 328.9 288 55.9
GSVIVG01025317001 Vitis vinifera HOM05D006389 ORTHO05D007863 6.2e-88 328.2 292 55.8
Oeu014062.1 Olea europaea HOM05D006389 ORTHO05D007863 1.1e-87 327.4 286 57.0
PSO339G5502 Papaver somniferum HOM05D006389 ORTHO05D007863 1.1e-87 327.4 285 57.2
Glyma.11G130800 Glycine max HOM05D006389 ORTHO05D007863 2.6e-86 322.8 285 54.4
TWI34G0575 Tripterygium wilfordii HOM05D006389 ORTHO05D007863 4.5e-86 322.0 283 54.4
Aqoxy1G00204 Aquilegia oxysepala HOM05D006389 ORTHO05D007863 7.6e-86 321.2 285 54.4
DCAR_023759 Daucus carota HOM05D006389 ORTHO05D007863 1.7e-85 320.1 290 51.7
FAN16G0020 Fragaria x ananassa HOM05D006389 ORTHO05D007863 4.9e-85 318.5 272 57.4
FAN21G1265 Fragaria x ananassa HOM05D002542 ORTHO05D005078 8.4e-85 317.8 272 57.4
Sc16g0011670 Simmondsia chinensis HOM05D006389 ORTHO05D007863 2.5e-84 316.2 290 53.1
CAN.G409.1 Capsicum annuum HOM05D006389 ORTHO05D007863 3.2e-84 315.8 289 51.6
Lalb_Chr03g0026221 Lupinus albus HOM05D006389 ORTHO05D007863 6.0e-83 311.6 290 54.1
Actinidia16300 Actinidia chinensis HOM05D006389 ORTHO05D007863 1.0e-82 310.8 274 54.7
Hund22074 Selenicereus undatus HOM05D006389 ORTHO05D007863 2.3e-82 309.7 290 52.4
arahy.Tifrunner.gnm1.ann1.VM78M6 Arachis hypogaea HOM05D006389 ORTHO05D007863 3.9e-82 308.9 291 51.9
arahy.Tifrunner.gnm1.ann1.XMKE9J Arachis hypogaea HOM05D006389 ORTHO05D007863 8.7e-82 307.8 288 51.4
AUR62019259 Chenopodium quinoa HOM05D006389 ORTHO05D007863 8.7e-82 307.8 290 52.4
Cpa.g.sc84.94 Carica papaya HOM05D006389 ORTHO05D007863 5.6e-81 305.1 273 51.6
Sopen11g021140 Solanum pennellii HOM05D006389 ORTHO05D007863 1.6e-80 303.5 289 50.2
Cc01_g04330 Coffea canephora HOM05D006389 ORTHO05D007863 1.8e-79 300.1 290 49.7
Hma1.2p1_0728F.1_g209350 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 2.4e-79 299.7 260 57.3
THA.LOC104799096 Tarenaya hassleriana HOM05D006389 ORTHO05D007863 4.0e-79 298.9 284 51.4
Haze_10646 Corylus avellana HOM05D006389 ORTHO05D007863 9.0e-79 297.7 321 47.7
Phvul.011G057100 Phaseolus vulgaris HOM05D006389 ORTHO05D007863 9.0e-79 297.7 290 51.0
Migut.N02297 Erythranthe guttata HOM05D006389 ORTHO05D007863 1.5e-78 297.0 274 53.3
Nitab4.5_0003250g0030 Nicotiana tabacum HOM05D006389 ORTHO05D007863 1.5e-78 297.0 269 53.2
HanXRQChr14g0453091 Helianthus annuus HOM05D006389 ORTHO05D007863 8.4e-77 291.2 290 51.0
HanXRQChr14g0455041 Helianthus annuus HOM05D006389 ORTHO05D007863 9.3e-76 287.7 290 50.7
HanXRQChr13g0407081 Helianthus annuus HOM05D006389 ORTHO05D007863 2.1e-75 286.6 290 50.3
Rhsim13G0224700 Rhododendron simsii HOM05D006389 ORTHO05D007863 6.0e-75 285.0 284 48.6
vmacro04176 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 7.9e-75 284.6 259 53.3
Lsat_1_v5_gn_2_101040 Lactuca sativa HOM05D006389 ORTHO05D007863 1.8e-74 283.5 289 51.9
AUR62000087 Chenopodium quinoa HOM05D006389 ORTHO05D007863 3.0e-74 282.7 277 51.6
SalBow4G2322 Salvia bowleyana HOM05D006389 ORTHO05D007863 5.7e-73 278.5 326 44.8
SalBow4G3167 Salvia bowleyana HOM05D006389 ORTHO05D007863 5.7e-73 278.5 326 44.8
VMungo1127G1170 Vigna mungo HOM05D006389 ORTHO05D007863 2.8e-72 276.2 254 51.2
TPR.G13666 Trifolium pratense HOM05D006389 ORTHO05D007863 8.2e-72 274.6 295 46.4
Lj3g0001596 Lotus japonicus HOM05D006389 ORTHO05D007863 1.1e-71 274.2 290 47.9
ECA238G3473 Erigeron canadensis HOM05D006389 ORTHO05D007863 6.9e-71 271.6 285 49.1
CDE06G1860 Ceratophyllum demersum HOM05D006389 ORTHO05D007863 1.5e-70 270.4 276 47.5
AT5G12920 Arabidopsis thaliana HOM05D006389 ORTHO05D007863 2.0e-70 270.0 289 45.3
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 1.3e-69 267.3 285 46.7
Medtr4g066000 Medicago truncatula HOM05D006389 ORTHO05D007863 1.3e-69 267.3 289 47.4
AL6G23480 Arabidopsis lyrata HOM05D006389 ORTHO05D007863 2.2e-69 266.5 289 45.0
HPP92_018945 Vanilla planifolia HOM05D006389 ORTHO05D007863 1.4e-68 263.8 272 49.6
A03p05690 Brassica napus HOM05D006389 ORTHO05D007863 4.2e-68 262.3 282 44.7
HanXRQChr13g0407091 Helianthus annuus HOM05D006389 ORTHO05D007863 4.2e-68 262.3 290 47.9
C03p06650 Brassica napus HOM05D006389 ORTHO05D007863 7.2e-68 261.5 282 44.7
Carub.0006s1110 Capsella rubella HOM05D006389 ORTHO05D007863 9.4e-68 261.2 282 43.6
Psat0s3083g0200 Pisum sativum HOM05D006389 ORTHO05D007863 9.4e-68 261.2 289 45.7
SGA_v2.0_scaffold3G01545 Striga asiatica HOM05D006389 ORTHO05D007863 1.6e-67 260.4 286 48.6
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 1.4e-66 257.3 288 43.4
CARHR200530 Cardamine hirsuta HOM05D006389 ORTHO05D007863 1.8e-66 256.9 282 44.3
Sp6g31040 Schrenkiella parvula HOM05D006389 ORTHO05D007863 8.8e-66 254.6 282 43.3
BolC3t13171H Brassica oleracea HOM05D006389 ORTHO05D007863 1.5e-65 253.8 290 43.4
Ah.02g115890 Amaranthus hybridus HOM05D006389 ORTHO05D007863 2.0e-65 253.4 245 50.6
Thhalv10015483m.g Eutrema salsugineum HOM05D006389 ORTHO05D007863 1.3e-64 250.8 295 42.4
BraA03t09908Z Brassica rapa HOM05D006389 ORTHO05D007863 3.7e-64 249.2 308 41.2
Thecc.09G225900 Theobroma cacao HOM05D006389 ORTHO05D007863 6.9e-63 245.0 179 62.6
AUR62043581 Chenopodium quinoa HOM05D006389 ORTHO05D007863 2.6e-62 243.0 286 45.1
Dinv36295 Davidia involucrata HOM05D006389 ORTHO05D007863 1.3e-61 240.7 179 61.5
unitig_699.g19125 Utricularia gibba HOM05D006389 ORTHO05D007863 2.9e-61 239.6 229 49.8
Zm00001eb245730 Zea mays HOM05D006389 ORTHO05D007863 2.9e-61 239.6 270 46.3
ATR0605G326 Amborella trichopoda HOM05D006389 ORTHO05D007863 9.4e-60 234.6 284 44.4
MSTRG.17573 Avicennia marina HOM05D006389 ORTHO05D007863 8.2e-56 221.5 202 55.0
Os02g0591600 Oryza sativa ssp. japonica HOM05D006389 ORTHO05D007863 1.2e-51 207.6 271 41.7
Ciclev10018279m.g Citrus clementina HOM05D006389 ORTHO05D007863 8.2e-48 194.9 168 56.5
Pp3c6_27180 Physcomitrium patens HOM05D006389 ORTHO05D007863 5.9e-46 188.7 263 36.5
MBI01_g14331_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 1.3e-45 187.6 157 55.4
Mapoly0014s0037 Marchantia polymorpha HOM05D006389 ORTHO05D007863 4.1e-39 166.0 291 33.7
HanXRQChr14g0450961 Helianthus annuus HOM05D006389 ORTHO05D007863 6.1e-35 152.1 179 43.0
Ca_20580_v3 Cicer arietinum L. HOM05D006389 ORTHO05D007863 1.3e-32 144.4 170 41.8
AagrBONN_evm.TU.Sc2ySwM_228.3166 Anthoceros agrestis HOM05D006389 ORTHO05D007863 2.9e-29 133.3 275 34.2
PSO384G2577 Papaver somniferum HOM05D006389 ORTHO05D007863 2.8e-27 126.7 109 55.0
SHI30505 Sapria himalayana HOM05D006389 ORTHO05D007863 5.2e-26 122.5 104 51.0
Nitab4.5_0000175g0150 Nicotiana tabacum HOM05D006389 ORTHO05D007863 4.4e-25 119.4 105 51.4
Peaxi162Scf00559g00114 Petunia axillaris HOM05D006389 ORTHO05D007863 4.4e-25 119.4 105 50.5
CSS0004435 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 7.5e-25 118.6 105 53.3
Solyc11g045510.3 Solanum lycopersicum HOM05D006389 ORTHO05D007863 1.3e-24 117.9 103 49.5
Nitab4.5_0000175g0160 Nicotiana tabacum HOM05D006389 ORTHO05D007863 4.9e-24 115.9 130 48.5
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-20 104.8 251 31.5
CSS0015492 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 2.5e-20 103.6 89 55.1
Peaxi162Scf00185g00310 Petunia axillaris HOM05D006389 ORTHO05D007863 2.4e-15 87.0 110 41.8
HanXRQChr13g0389161 Helianthus annuus HOM05D006389 ORTHO05D007863 7.0e-15 85.5 53 67.9
MCO05G648 Micromonas commoda HOM05D006389 ORTHO05D007863 2.5e-12 77.0 190 28.4
SHI30507 Sapria himalayana HOM05D006389 ORTHO05D007863 1.1e-10 71.6 116 37.1
Psat4g014880 Pisum sativum HOM05D006389 ORTHO05D007863 2.3e-10 70.5 142 31.0
arahy.Tifrunner.gnm1.ann1.RII35Q Arachis hypogaea HOM05D006389 ORTHO05D007863 1.2e-09 68.2 262 24.0
Peaxi162Scf00559g00110 Petunia axillaris HOM05D006389 ORTHO05D007863 7.1e-07 58.9 50 54.0


User provided reference genes

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