Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03625 Eucalyptus grandis HOM05D006328 ORTHO05D007721 1.4e-139 499.6 250 100.0
PGR102G1639 Punica granatum HOM05D006328 ORTHO05D007721 1.5e-96 356.7 229 80.8
CiPaw.13G173100 Carya illinoinensis HOM05D006328 ORTHO05D007721 6.4e-92 341.3 248 71.8
Ciclev10016391m.g Citrus clementina HOM05D006328 ORTHO05D007721 8.4e-92 340.9 238 73.9
Manes.03G088400 Manihot esculenta HOM05D006328 ORTHO05D007721 5.4e-91 338.2 225 77.3
Cpa.g.sc119.81 Carica papaya HOM05D006328 ORTHO05D007721 7.1e-91 337.8 263 68.8
Dinv13426 Davidia involucrata HOM05D006328 ORTHO05D007721 1.6e-90 336.7 225 77.3
Thecc.09G213100 Theobroma cacao HOM05D006328 ORTHO05D007721 1.6e-90 336.7 226 77.0
QL01p007982 Quercus lobata HOM05D006328 ORTHO05D007721 3.5e-90 335.5 225 75.1
COL.COLO4_34990 Corchorus olitorius HOM05D001240 ORTHO05D002450 1.3e-89 333.6 187 87.2
Potri.003G216700 Populus trichocarpa HOM05D006328 ORTHO05D007721 1.1e-88 330.5 260 68.5
Sopen01g002030 Solanum pennellii HOM05D006328 ORTHO05D007721 1.1e-88 330.5 221 74.2
PGSC0003DMG400032183 Solanum tuberosum HOM05D006328 ORTHO05D007721 1.1e-88 330.5 221 73.8
Atru.chr3.2259 Acer truncatum HOM05D006328 ORTHO05D007721 1.5e-88 330.1 257 68.9
Atru.chr3.2265 Acer truncatum HOM05D006328 ORTHO05D007721 1.5e-88 330.1 257 68.9
Solyc01g006020.4 Solanum lycopersicum HOM05D006328 ORTHO05D007721 1.5e-88 330.1 221 73.8
Nitab4.5_0011368g0030 Nicotiana tabacum HOM05D006328 ORTHO05D007721 1.9e-88 329.7 221 73.8
Prupe.1G537200 Prunus persica HOM05D006328 ORTHO05D007721 1.9e-88 329.7 265 69.4
Peaxi162Scf00100g00716 Petunia axillaris HOM05D006328 ORTHO05D007721 2.5e-88 329.3 241 72.6
TAR633G0950 Trochodendron aralioides HOM05D006328 ORTHO05D007721 3.3e-88 328.9 255 68.6
TAR633G1956 Trochodendron aralioides HOM05D006328 ORTHO05D007721 4.3e-88 328.6 255 68.6
FAN21G0799 Fragaria x ananassa HOM05D006328 ORTHO05D007721 7.3e-88 327.8 275 67.3
Nitab4.5_0000775g0140 Nicotiana tabacum HOM05D006328 ORTHO05D007721 7.3e-88 327.8 221 73.3
RcHm_v2.0_Chr5g0081531 Rosa chinensis HOM05D006328 ORTHO05D007721 9.6e-88 327.4 261 67.4
Hund07572 Selenicereus undatus HOM05D006328 ORTHO05D007721 9.6e-88 327.4 256 68.8
FvH4_3g44830 Fragaria vesca HOM05D006328 ORTHO05D007721 1.6e-87 326.6 266 67.7
FAN11G1794 Fragaria x ananassa HOM05D006328 ORTHO05D007721 1.6e-87 326.6 266 67.7
THA.LOC104811061 Tarenaya hassleriana HOM05D006328 ORTHO05D007721 4.7e-87 325.1 261 66.7
CANSAT11G2432 Cannabis sativa HOM05D006328 ORTHO05D007721 6.2e-87 324.7 271 64.2
FAN16G1952 Fragaria x ananassa HOM05D006328 ORTHO05D007721 6.2e-87 324.7 267 67.8
Gohir.D13G217500 Gossypium hirsutum HOM05D006328 ORTHO05D007721 6.2e-87 324.7 255 68.2
EL10Ac4g10350 Beta vulgaris HOM05D006328 ORTHO05D007721 8.1e-87 324.3 230 71.3
ClCG03G013990 Citrullus lanatus HOM05D006328 ORTHO05D007721 8.1e-87 324.3 245 69.8
Hma1.2p1_0062F.1_g034170 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 8.1e-87 324.3 182 86.8
CARHR153570 Cardamine hirsuta HOM05D006328 ORTHO05D007721 1.1e-86 323.9 250 66.4
GSVIVG01025405001 Vitis vinifera HOM05D006328 ORTHO05D007721 1.1e-86 323.9 190 83.7
Gorai.013G248000 Gossypium raimondii HOM05D006328 ORTHO05D007721 1.4e-86 323.6 255 67.8
TWI60G0846 Tripterygium wilfordii HOM05D006328 ORTHO05D007721 1.4e-86 323.6 254 68.9
MELO3C015648.2 Cucumis melo HOM05D006328 ORTHO05D007721 2.4e-86 322.8 249 68.3
ClCG08G005770 Citrullus lanatus HOM05D006328 ORTHO05D007721 3.1e-86 322.4 251 66.9
Gohir.A13G213700 Gossypium hirsutum HOM05D006328 ORTHO05D007721 3.1e-86 322.4 255 67.8
Sed0015335 Sechium edule HOM05D006328 ORTHO05D007721 3.1e-86 322.4 251 68.5
CsaV3_1G042230 Cucumis sativus L. HOM05D006328 ORTHO05D007721 4.0e-86 322.0 249 68.3
FAN25G2838 Fragaria x ananassa HOM05D006328 ORTHO05D007721 8.9e-86 320.9 267 67.4
Haze_22985 Corylus avellana HOM05D006328 ORTHO05D007721 2.0e-85 319.7 307 60.3
Sabra03G0161800 Salix brachista HOM05D006328 ORTHO05D007721 2.0e-85 319.7 279 63.8
Glyma.08G315600 Glycine max HOM05D006328 ORTHO05D007721 2.6e-85 319.3 245 69.4
Lj1A460T3 Lonicera japonica HOM05D006328 ORTHO05D007721 5.8e-85 318.2 224 73.7
Lsat_1_v5_gn_2_101560 Lactuca sativa HOM05D006328 ORTHO05D007721 1.7e-84 316.6 242 66.1
CAN.G158.4 Capsicum annuum HOM05D006328 ORTHO05D007721 2.2e-84 316.2 228 71.5
Lalb_Chr10g0091951 Lupinus albus HOM05D006328 ORTHO05D007721 2.2e-84 316.2 244 67.2
A06p39560 Brassica napus HOM05D006328 ORTHO05D007721 2.9e-84 315.8 245 65.7
BraA06t26871Z Brassica rapa HOM05D006328 ORTHO05D007721 2.9e-84 315.8 245 65.7
AUR62019196 Chenopodium quinoa HOM05D006328 ORTHO05D007721 2.9e-84 315.8 225 72.0
C07p38710 Brassica napus HOM05D006328 ORTHO05D007721 3.8e-84 315.5 245 65.7
MD08G1205200 Malus domestica HOM05D006328 ORTHO05D007721 3.8e-84 315.5 262 66.0
AL5G20530 Arabidopsis lyrata HOM05D006328 ORTHO05D007721 4.9e-84 315.1 227 69.2
Phvul.006G042800 Phaseolus vulgaris HOM05D006328 ORTHO05D007721 8.4e-84 314.3 193 80.3
Nn7g35935 Nelumbo nucifera HOM05D006328 ORTHO05D007721 1.4e-83 313.5 257 66.5
HanXRQChr07g0196761 Helianthus annuus HOM05D006328 ORTHO05D007721 1.9e-83 313.2 239 68.2
MBI13_g29633_MAGBIO Magnolia biondii HOM05D006328 ORTHO05D007721 1.9e-83 313.2 241 66.8
Actinidia16265 Actinidia chinensis HOM05D006328 ORTHO05D007721 3.2e-83 312.4 183 82.5
Lj6g0000665 Lotus japonicus HOM05D006328 ORTHO05D007721 4.2e-83 312.0 225 72.4
Aa31LG4G12590 Aethionema arabicum HOM05D006328 ORTHO05D007721 5.4e-83 311.6 227 70.5
Cc01_g01550 Coffea canephora HOM05D006328 ORTHO05D007721 5.4e-83 311.6 227 68.7
Oeu029372.1 Olea europaea HOM05D006328 ORTHO05D007721 5.4e-83 311.6 184 80.4
MSTRG.18860 Avicennia marina HOM05D006328 ORTHO05D007721 7.1e-83 311.2 221 72.9
BcaB04g19533 Brassica carinata HOM05D006328 ORTHO05D007721 9.3e-83 310.8 245 64.5
ECA238G4721 Erigeron canadensis HOM05D006328 ORTHO05D007721 9.3e-83 310.8 247 65.6
Thhalv10004835m.g Eutrema salsugineum HOM05D006328 ORTHO05D007721 1.2e-82 310.5 244 65.6
BcaC04g23807 Brassica carinata HOM05D006328 ORTHO05D007721 2.1e-82 309.7 244 65.6
C09p04470 Brassica napus HOM05D006328 ORTHO05D007721 2.1e-82 309.7 244 65.6
BolC9t53377H Brassica oleracea HOM05D006328 ORTHO05D007721 2.1e-82 309.7 244 65.6
Sp2g18300 Schrenkiella parvula HOM05D006328 ORTHO05D007721 2.1e-82 309.7 245 64.9
BraA09t36060Z Brassica rapa HOM05D006328 ORTHO05D007721 2.7e-82 309.3 247 64.4
CSS0031266 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 3.5e-82 308.9 187 81.8
A09p04230 Brassica napus HOM05D006328 ORTHO05D007721 6.0e-82 308.1 246 65.0
Glyma.18G097300 Glycine max HOM05D006328 ORTHO05D007721 7.8e-82 307.8 251 67.3
Carub.0003s3500 Capsella rubella HOM05D006328 ORTHO05D007721 1.0e-81 307.4 224 69.6
SGA_v2.0_scaffold6G03437 Striga asiatica HOM05D006328 ORTHO05D007721 2.3e-81 306.2 231 70.6
AT3G32930 Arabidopsis thaliana HOM05D006328 ORTHO05D007721 3.9e-81 305.4 228 66.7
unitig_746.g26630 Utricularia gibba HOM05D006328 ORTHO05D007721 3.9e-81 305.4 220 73.2
Migut.D02532 Erythranthe guttata HOM05D006328 ORTHO05D007721 5.1e-81 305.1 238 68.1
SalBow6G6014 Salvia bowleyana HOM05D006328 ORTHO05D007721 8.7e-81 304.3 182 81.9
arahy.Tifrunner.gnm1.ann1.6HD85A Arachis hypogaea HOM05D006328 ORTHO05D007721 1.1e-80 303.9 248 66.9
HPP92_009650 Vanilla planifolia HOM05D006328 ORTHO05D007721 1.3e-79 300.4 187 76.5
ATR0598G038 Amborella trichopoda HOM05D006328 ORTHO05D007721 3.6e-79 298.9 221 69.7
Manes.15G105600 Manihot esculenta HOM05D006328 ORTHO05D007721 4.8e-79 298.5 255 65.1
Medtr3g083310 Medicago truncatula HOM05D006328 ORTHO05D007721 1.8e-78 296.6 257 63.4
TPR.G19330 Trifolium pratense HOM05D006328 ORTHO05D007721 3.1e-78 295.8 227 66.5
AUR62000025 Chenopodium quinoa HOM05D006328 ORTHO05D007721 3.4e-77 292.4 173 82.7
PSO339G5084 Papaver somniferum HOM05D006328 ORTHO05D007721 4.5e-77 292.0 185 76.2
Duzib150G1371 Durio zibethinus HOM05D006328 ORTHO05D007721 5.8e-77 291.6 253 65.2
DCAR_001992 Daucus carota HOM05D006328 ORTHO05D007721 1.7e-76 290.0 253 60.9
PSO384G1580 Papaver somniferum HOM05D006328 ORTHO05D007721 1.9e-75 286.6 185 75.1
Aqoxy1G00065 Aquilegia oxysepala HOM05D006328 ORTHO05D007721 7.1e-75 284.6 220 67.3
Actinidia06854 Actinidia chinensis HOM05D001240 ORTHO05D002450 1.6e-74 283.5 169 81.1
Ah.06g193050 Amaranthus hybridus HOM05D001193 ORTHO05D007721 7.9e-74 281.2 274 56.2
CDE06G2606 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 2.3e-73 279.6 221 64.7
Rhsim13G0229700 Rhododendron simsii HOM05D006328 ORTHO05D007721 2.1e-71 273.1 294 55.8
Hma1.2p1_0062F.1_g034180 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 7.1e-67 258.1 139 89.2
Zm00001eb108920 Zea mays HOM05D006328 ORTHO05D007721 6.7e-65 251.5 228 60.5
Os07g0608100 Oryza sativa ssp. japonica HOM05D006328 ORTHO05D007721 1.9e-64 250.0 211 63.0
vmacro04215 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 1.3e-63 247.3 181 69.6
VMungo0540G0449 Vigna mungo HOM05D006328 ORTHO05D007721 4.6e-58 228.8 122 89.3
Psat5g101200 Pisum sativum HOM05D006328 ORTHO05D007721 1.1e-54 217.6 205 58.5
AagrBONN_evm.TU.Sc2ySwM_344.1649 Anthoceros agrestis HOM05D006328 ORTHO05D007721 5.5e-51 205.3 233 51.5
Sc06g0004300 Simmondsia chinensis HOM05D006328 ORTHO05D007721 5.7e-48 195.3 180 59.4
Mapoly0048s0070 Marchantia polymorpha HOM05D006328 ORTHO05D007721 1.1e-46 191.0 199 51.8
vmacro22566 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 4.5e-45 185.7 129 72.9
Pp3c11_23310 Physcomitrium patens HOM05D006328 ORTHO05D007721 7.2e-43 178.3 185 51.9
CBR_g50072 Chara braunii HOM05D006328 ORTHO05D007721 1.7e-36 157.1 140 53.6
CDE07G1106 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 2.9e-36 156.4 211 42.7
CSS0049555 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 3.9e-33 146.0 105 70.5
Duzib168G1709 Durio zibethinus HOM05D006328 ORTHO05D007721 6.7e-33 145.2 188 47.9
Nn2g15765 Nelumbo nucifera HOM05D006328 ORTHO05D007721 1.3e-31 141.0 71 91.5
CSS0028438 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 1.7e-31 140.6 104 69.2
HanXRQChr04g0113321 Helianthus annuus HOM05D006328 ORTHO05D007721 3.6e-26 122.9 61 91.8
Dinv15017 Davidia involucrata HOM05D006328 ORTHO05D007721 1.3e-23 114.4 135 51.1
Nn2g15764 Nelumbo nucifera HOM05D006328 ORTHO05D007721 2.2e-20 103.6 81 69.1
HanXRQChr17g0560491 Helianthus annuus HOM05D006328 ORTHO05D007721 3.6e-18 96.3 56 82.1
unitig_899.g15354 Utricularia gibba HOM05D006328 ORTHO05D007721 2.3e-17 93.6 186 38.2
VMungo0540G1370 Vigna mungo HOM05D006328 ORTHO05D007721 5.7e-16 89.0 130 46.9
Hma1.2p1_0062F.1_g034160 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 1.8e-14 84.0 80 60.0
arahy.Tifrunner.gnm1.ann1.VB18ZC Arachis hypogaea HOM05D006328 ORTHO05D007721 3.1e-14 83.2 125 45.6
arahy.Tifrunner.gnm1.ann1.C5G03I Arachis hypogaea HOM05D006328 ORTHO05D007721 5.4e-14 82.4 66 62.1
Sabra06G0010000 Salix brachista HOM05D006328 ORTHO05D007721 4.5e-13 79.3 109 48.6
Zm00001eb327220 Zea mays HOM05D006328 ORTHO05D007721 4.2e-11 72.8 103 48.5
Dinv08842 Davidia involucrata HOM05D006328 ORTHO05D007721 6.8e-09 65.5 51 66.7


User provided reference genes

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