Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03481 Eucalyptus grandis HOM05D005952 ORTHO05D007262 8.3e-173 610.5 367 100.0
Prupe.1G228700 Prunus persica HOM05D005952 ORTHO05D007262 6.4e-141 504.6 317 83.6
PGR102G2583 Punica granatum HOM05D005952 ORTHO05D007262 1.2e-139 500.4 323 82.7
Manes.13G018200 Manihot esculenta HOM05D005952 ORTHO05D007262 7.8e-139 497.7 320 82.8
MD16G1117500 Malus domestica HOM05D005952 ORTHO05D007262 4.3e-137 491.9 320 83.1
QL03p053757 Quercus lobata HOM05D005952 ORTHO05D007262 2.1e-136 489.6 317 84.9
CiPaw.06G101100 Carya illinoinensis HOM05D005952 ORTHO05D007262 4.8e-136 488.4 321 85.0
Ciclev10031923m.g Citrus clementina HOM05D005952 ORTHO05D007262 4.0e-135 485.3 321 83.8
TWI75G1563 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 4.0e-135 485.3 319 80.6
Atru.chr11.2304 Acer truncatum HOM05D005952 ORTHO05D007262 1.2e-134 483.8 321 82.2
Gohir.A03G127000 Gossypium hirsutum HOM05D005952 ORTHO05D007262 2.6e-134 482.6 320 79.4
Nn3g16502 Nelumbo nucifera HOM05D005952 ORTHO05D007262 4.5e-134 481.9 324 80.6
TAR622G0739 Trochodendron aralioides HOM05D005952 ORTHO05D007262 7.6e-134 481.1 307 82.4
Gohir.D02G150400 Gossypium hirsutum HOM05D005952 ORTHO05D007262 9.9e-134 480.7 320 79.1
Cfa009332 Carpinus fangiana HOM05D005952 ORTHO05D007262 8.4e-133 477.6 312 82.1
ClCG11G013770 Citrullus lanatus HOM05D005952 ORTHO05D007262 1.1e-132 477.2 320 79.1
MELO3C011875.2 Cucumis melo HOM05D005952 ORTHO05D007262 1.4e-132 476.9 320 79.1
Thecc.02G212400 Theobroma cacao HOM05D005952 ORTHO05D007262 2.4e-132 476.1 320 78.8
COL.COLO4_20379 Corchorus olitorius HOM05D005952 ORTHO05D007262 5.4e-132 474.9 350 76.6
CsaV3_5G030360 Cucumis sativus L. HOM05D005952 ORTHO05D007262 5.4e-132 474.9 320 78.1
Gorai.005G168700 Gossypium raimondii HOM05D005952 ORTHO05D007262 2.1e-131 473.0 325 77.8
Cpa.g.sc43.12 Carica papaya HOM05D005952 ORTHO05D007262 4.6e-131 471.9 346 76.6
Duzib251G0036 Durio zibethinus HOM05D005952 ORTHO05D007262 6.0e-131 471.5 319 79.3
Cc00_g13550 Coffea canephora HOM05D005952 ORTHO05D007262 1.8e-130 469.9 308 79.9
CSS0022532 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 8.7e-130 467.6 290 84.8
CSS0029993 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 8.7e-130 467.6 290 84.8
Haze_12392 Corylus avellana HOM05D005952 ORTHO05D007262 1.1e-129 467.2 354 73.4
CANSAT01G2967 Cannabis sativa HOM05D005952 ORTHO05D007262 2.5e-129 466.1 318 78.6
arahy.Tifrunner.gnm1.ann1.19W7I6 Arachis hypogaea HOM05D005952 ORTHO05D007262 3.3e-129 465.7 316 79.7
VMungo1383G3287 Vigna mungo HOM05D005952 ORTHO05D007262 4.3e-129 465.3 320 77.2
Sabra10G0046500 Salix brachista HOM05D005952 ORTHO05D007262 7.4e-129 464.5 299 81.9
Sed0028059 Sechium edule HOM05D005952 ORTHO05D007262 1.3e-128 463.8 317 77.6
Solyc12g035650.2 Solanum lycopersicum HOM05D005952 ORTHO05D007262 1.6e-128 463.4 322 77.6
Sopen12g015910 Solanum pennellii HOM05D005952 ORTHO05D007262 1.6e-128 463.4 322 77.6
Phvul.001G260500 Phaseolus vulgaris HOM05D005952 ORTHO05D007262 2.1e-128 463.0 317 79.2
Potri.010G059100 Populus trichocarpa HOM05D005952 ORTHO05D007262 2.8e-128 462.6 319 81.5
Actinidia20698 Actinidia chinensis HOM05D005952 ORTHO05D007262 4.8e-128 461.8 312 76.6
Aqoxy5G03416 Aquilegia oxysepala HOM05D005952 ORTHO05D007262 8.1e-128 461.1 293 82.3
RcHm_v2.0_Chr4g0430621 Rosa chinensis HOM05D005952 ORTHO05D007262 1.1e-127 460.7 323 77.4
Dinv14825 Davidia involucrata HOM05D005952 ORTHO05D007262 2.6e-126 456.1 295 80.0
TWI36G0663 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 2.6e-126 456.1 280 83.6
GSVIVG01010442001 Vitis vinifera HOM05D005952 ORTHO05D007262 1.3e-125 453.8 263 87.5
AUR62024128 Chenopodium quinoa HOM05D005952 ORTHO05D007262 2.2e-125 453.0 330 75.2
MBI11_g07451_MAGBIO Magnolia biondii HOM05D005952 ORTHO05D007262 2.2e-125 453.0 269 85.9
FAN07G2304 Fragaria x ananassa HOM05D005952 ORTHO05D007262 6.4e-125 451.4 318 76.1
FAN07G2604 Fragaria x ananassa HOM05D005952 ORTHO05D007262 6.4e-125 451.4 313 77.6
FAN24G3446 Fragaria x ananassa HOM05D005952 ORTHO05D007262 6.4e-125 451.4 313 77.6
THA.LOC104825515 Tarenaya hassleriana HOM05D005952 ORTHO05D007262 8.4e-125 451.1 317 78.9
Glyma.18G008100 Glycine max HOM05D005952 ORTHO05D007262 1.1e-124 450.7 292 79.1
CAN.G34.9 Capsicum annuum HOM05D005952 ORTHO05D007262 1.9e-124 449.9 311 77.2
Peaxi162Scf00518g00512 Petunia axillaris HOM05D005952 ORTHO05D007262 3.2e-124 449.1 330 74.5
MSTRG.7992 Avicennia marina HOM05D005952 ORTHO05D007262 4.2e-124 448.7 329 74.8
Nitab4.5_0000492g0130 Nicotiana tabacum HOM05D005952 ORTHO05D007262 4.2e-124 448.7 324 75.9
Lj3A1066G68 Lonicera japonica HOM05D005952 ORTHO05D007262 1.2e-123 447.2 315 75.6
EL10Ac6g13481 Beta vulgaris HOM05D005952 ORTHO05D007262 2.1e-123 446.4 333 73.6
Glyma.11G249200 Glycine max HOM05D005952 ORTHO05D007262 2.7e-123 446.0 315 76.5
MD13G1116800 Malus domestica HOM05D005952 ORTHO05D007262 2.3e-122 443.0 266 85.7
Psat5g094800 Pisum sativum HOM05D005952 ORTHO05D007262 2.3e-122 443.0 317 77.9
Ah.02g130720 Amaranthus hybridus HOM05D005952 ORTHO05D007262 8.7e-122 441.0 274 81.8
Hund06080 Selenicereus undatus HOM05D005952 ORTHO05D007262 1.1e-121 440.7 323 74.3
BcaB03g12064 Brassica carinata HOM05D005952 ORTHO05D007262 1.5e-121 440.3 318 75.2
C03p73530 Brassica napus HOM05D005952 ORTHO05D007262 5.6e-121 438.3 318 73.9
Lalb_Chr12g0206321 Lupinus albus HOM05D005952 ORTHO05D007262 5.6e-121 438.3 297 77.4
BolC3t19647H Brassica oleracea HOM05D005952 ORTHO05D007262 1.3e-120 437.2 318 75.8
Lj1g0012703 Lotus japonicus HOM05D005952 ORTHO05D007262 2.1e-120 436.4 319 73.0
FvH4_4g23970 Fragaria vesca HOM05D005952 ORTHO05D007262 2.8e-120 436.0 262 84.7
A08p26510 Brassica napus HOM05D005952 ORTHO05D007262 4.8e-120 435.3 318 75.8
BraA08t34603Z Brassica rapa HOM05D005952 ORTHO05D007262 4.8e-120 435.3 318 76.1
BcaC01g01637 Brassica carinata HOM05D005952 ORTHO05D007262 6.2e-120 434.9 318 75.5
Sc04g0004640 Simmondsia chinensis HOM05D005952 ORTHO05D007262 1.1e-119 434.1 320 72.2
CARHR026780 Cardamine hirsuta HOM05D005952 ORTHO05D007262 6.9e-119 431.4 318 73.9
CDE02G4251 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 1.2e-118 430.6 317 74.1
Migut.K00712 Erythranthe guttata HOM05D005952 ORTHO05D007262 2.6e-118 429.5 329 72.6
Medtr3g085590 Medicago truncatula HOM05D005952 ORTHO05D007262 3.4e-118 429.1 272 81.2
FAN03G3372 Fragaria x ananassa HOM05D005952 ORTHO05D007262 5.8e-118 428.3 323 73.7
Potri.008G176100 Populus trichocarpa HOM05D005952 ORTHO05D007262 5.8e-118 428.3 324 75.9
Sp1g23460 Schrenkiella parvula HOM05D005952 ORTHO05D007262 2.2e-117 426.4 321 72.3
Nitab4.5_0002026g0100 Nicotiana tabacum HOM05D005952 ORTHO05D007262 3.8e-117 425.6 324 73.1
Oeu036880.1 Olea europaea HOM05D005952 ORTHO05D007262 3.8e-117 425.6 355 68.2
Rhsim12G0102200 Rhododendron simsii HOM05D005952 ORTHO05D007262 3.8e-117 425.6 391 62.7
AT1G24310 Arabidopsis thaliana HOM05D005952 ORTHO05D007262 6.5e-117 424.9 322 72.7
HanXRQChr08g0207671 Helianthus annuus HOM05D005952 ORTHO05D007262 1.1e-116 424.1 327 71.3
Lsat_1_v5_gn_8_149221 Lactuca sativa HOM05D005952 ORTHO05D007262 1.9e-116 423.3 327 71.6
AL1G40610 Arabidopsis lyrata HOM05D005952 ORTHO05D007262 3.2e-116 422.5 292 73.3
SGA_v2.0_scaffold9G04762 Striga asiatica HOM05D005952 ORTHO05D007262 4.2e-116 422.2 270 80.7
ATR0561G264 Amborella trichopoda HOM05D005952 ORTHO05D007262 7.1e-116 421.4 287 75.3
Sed0012291 Sechium edule HOM05D005952 ORTHO05D007262 6.0e-115 418.3 320 70.9
Aa31LG7G9800 Aethionema arabicum HOM05D005952 ORTHO05D007262 4.8e-112 408.7 323 69.3
ECA233G5976 Erigeron canadensis HOM05D005952 ORTHO05D007262 1.1e-111 407.5 295 73.6
Carub.0001s2576 Capsella rubella HOM05D005952 ORTHO05D007262 1.8e-111 406.8 317 70.3
PSO063G3255 Papaver somniferum HOM05D005952 ORTHO05D007262 3.8e-109 399.1 317 71.6
FAN27G1928 Fragaria x ananassa HOM05D005952 ORTHO05D007262 3.2e-108 396.0 294 72.8
PSO782G2816 Papaver somniferum HOM05D005952 ORTHO05D007262 3.2e-108 396.0 299 72.2
arahy.Tifrunner.gnm1.ann1.2251QZ Arachis hypogaea HOM05D005952 ORTHO05D007262 2.7e-107 392.9 316 70.9
Ca_16474_v3 Cicer arietinum L. HOM05D005952 ORTHO05D007262 4.6e-107 392.1 246 79.7
AUR62005599 Chenopodium quinoa HOM05D005952 ORTHO05D007262 7.9e-107 391.3 292 72.9
FAN21G1414 Fragaria x ananassa HOM05D005952 ORTHO05D007262 3.9e-106 389.0 294 72.8
DCAR_031192 Daucus carota HOM05D005952 ORTHO05D007262 5.7e-105 385.2 241 80.1
Os07g0295400 Oryza sativa ssp. japonica HOM05D005952 ORTHO05D007262 5.5e-100 368.6 269 67.7
Zm00001eb305390 Zea mays HOM05D005952 ORTHO05D007262 2.1e-99 366.7 294 64.3
HPP92_023193 Vanilla planifolia HOM05D005952 ORTHO05D007262 1.5e-97 360.5 306 63.7
SHI17953 Sapria himalayana HOM05D005952 ORTHO05D007262 1.5e-94 350.5 278 67.3
FAN04G2616 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.4e-92 344.0 222 81.1
Mapoly0010s0010 Marchantia polymorpha HOM05D005952 ORTHO05D007262 1.4e-92 344.0 272 65.4
SEGI_29251 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 2.1e-91 340.1 270 64.8
SalBow2G2019 Salvia bowleyana HOM05D005952 ORTHO05D007262 3.7e-88 329.3 266 67.3
CDE06G2258 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 6.3e-88 328.6 317 60.6
Pp3c10_15930 Physcomitrium patens HOM05D005952 ORTHO05D007262 1.4e-87 327.4 294 59.9
Pp3c10_15937 Physcomitrium patens HOM05D005952 ORTHO05D007262 1.4e-87 327.4 294 59.9
AagrBONN_evm.TU.Sc2ySwM_362.1552 Anthoceros agrestis HOM05D005952 ORTHO05D007262 3.2e-84 316.2 265 58.5
CBR_g21943 Chara braunii HOM05D005952 ORTHO05D007262 7.2e-84 315.1 274 58.4
Thhalv10008300m.g Eutrema salsugineum HOM05D005952 ORTHO05D007262 2.7e-83 313.2 212 75.9
CBR_g39502 Chara braunii HOM05D005952 ORTHO05D007262 4.4e-81 305.8 318 52.2
TWI36G1659 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 5.3e-79 298.9 339 55.8
FAN04G0683 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.2e-73 281.2 200 75.5
Actinidia09658 Actinidia chinensis HOM05D005952 ORTHO05D007262 8.3e-72 275.0 252 61.5
Hma1.2p1_0668F.1_g200020 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 7.0e-71 271.9 171 85.4
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 1.6e-67 260.8 197 71.1
Pp3c14_14130 Physcomitrium patens HOM05D005952 ORTHO05D007262 2.5e-52 210.3 214 52.8
FAN23G0106 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.1e-50 204.9 149 73.2
Hma1.2p1_0668F.1_g200040 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 7.5e-49 198.7 114 83.3
FAN04G0535 Fragaria x ananassa HOM05D005952 ORTHO05D007262 3.4e-33 146.7 107 75.7
SEGI_23869 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 5.1e-29 132.9 96 64.6
HanXRQChr03g0071651 Helianthus annuus HOM05D005952 ORTHO05D007262 4.3e-28 129.8 76 78.9
Migut.K01177 Erythranthe guttata HOM05D005952 ORTHO05D007262 1.3e-19 101.7 104 63.5
Cre12.g542950 Chlamydomonas reinhardtii HOM05D005952 ORTHO05D007262 1.1e-18 98.6 255 29.8
MCO04G375 Micromonas commoda HOM05D005952 ORTHO05D007262 1.8e-18 97.8 267 28.8
Oeu029609.1 Olea europaea HOM05D005952 ORTHO05D007262 4.0e-18 96.7 62 69.4
SEGI_30692 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 3.2e-15 87.0 114 43.9
BcaC03g16356 Brassica carinata HOM05D029489 ORTHO05D007262 3.5e-06 57.0 38 68.4


User provided reference genes

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