Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1765.7 854 100.0
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1355.9 854 74.7
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1340.5 853 73.7
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1326.6 855 73.3
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1312.7 850 73.1
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1307.7 850 71.9
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1307.0 851 73.0
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1303.5 850 72.4
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1293.1 851 71.9
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1291.9 854 72.4
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1290.0 850 71.3
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1288.1 853 71.9
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1287.7 851 71.8
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1285.4 851 71.7
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1278.1 858 70.0
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1274.6 849 71.6
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1266.5 854 70.4
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1265.8 855 70.4
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1255.0 853 70.1
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1251.5 886 67.2
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1251.1 850 69.3
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1251.1 850 69.5
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1246.1 852 69.7
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1245.0 882 68.3
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1244.6 862 68.7
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1243.4 850 69.3
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1242.6 852 68.5
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1241.1 852 68.2
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1241.1 852 68.2
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1239.9 850 69.3
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1239.6 853 68.5
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1234.6 853 69.3
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1233.4 850 69.4
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1231.5 850 68.7
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1230.7 850 68.6
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1229.5 861 68.4
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1228.4 857 67.3
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1227.2 850 67.3
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1226.5 853 68.8
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1225.7 856 68.0
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1223.8 872 67.4
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1221.1 812 71.7
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1220.7 850 68.7
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1216.1 856 67.6
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1214.9 849 69.1
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1214.1 858 67.2
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1213.4 827 69.6
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1213.4 853 68.0
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1206.4 854 67.2
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1204.5 973 61.4
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1203.7 856 68.2
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1199.9 854 66.6
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1196.0 858 65.5
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1194.1 856 67.3
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1192.9 854 66.3
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1190.3 857 65.3
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1189.9 812 69.3
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1189.9 855 66.1
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1186.4 857 65.2
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1179.5 860 65.5
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1179.1 843 65.6
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1175.6 849 64.9
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1173.7 858 64.9
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1171.8 854 64.9
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1171.0 850 66.5
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1169.5 855 65.8
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1169.1 853 65.8
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1169.1 851 65.6
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1166.8 856 64.0
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1166.4 857 64.4
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1164.8 855 63.9
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1162.9 859 64.6
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1160.6 876 63.1
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1159.1 889 62.3
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1159.1 860 64.5
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1157.1 861 64.5
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1155.6 861 64.1
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1152.9 872 64.1
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1145.6 861 64.1
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1139.4 892 61.9
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 0.0e+00 1139.0 857 62.7
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1138.6 854 63.8
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1136.7 865 63.0
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 0.0e+00 1135.6 850 63.9
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1117.4 850 62.8
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 0.0e+00 1105.1 854 62.9
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1102.8 873 60.8
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 0.0e+00 1098.2 847 63.3
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1095.1 751 67.8
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 0.0e+00 1092.4 861 60.4
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1092.0 881 61.1
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1083.2 780 64.5
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1079.3 777 64.2
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 0.0e+00 1076.6 766 67.9
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 5.8e-312 1073.9 776 63.9
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 1.8e-311 1072.4 724 69.3
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 7.0e-311 1070.5 775 64.0
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 9.8e-310 1066.6 779 62.8
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 1.7e-309 1065.8 775 63.2
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 1.7e-309 1065.8 825 60.2
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 8.3e-309 1063.5 864 61.0
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 1.3e-306 1056.2 784 63.4
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 3.0e-306 1055.0 838 60.4
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 1.6e-304 1049.3 784 62.5
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 1.3e-301 1039.6 785 61.9
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 3.7e-301 1038.1 816 60.7
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 4.9e-301 1037.7 868 57.4
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 2.4e-300 1035.4 786 62.3
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 9.2e-300 1033.5 717 67.9
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 1.6e-299 1032.7 911 57.4
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 2.1e-296 1022.3 853 58.3
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 3.6e-296 1021.5 853 58.3
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 8.1e-296 1020.4 786 61.6
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 1.9e-292 1009.2 845 57.6
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 9.9e-286 986.9 729 63.1
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 7.6e-278 960.7 808 57.9
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 2.4e-271 939.1 859 55.1
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 8.2e-256 887.5 856 51.9
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 2.4e-255 885.9 650 65.5
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.7e-253 879.8 771 55.6
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 3.1e-247 859.0 599 69.3
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 9.1e-247 857.4 798 54.1
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 2.7e-243 845.9 827 51.0
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 7.7e-238 827.8 775 51.0
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 1.6e-230 803.5 789 50.4
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 6.5e-221 771.5 776 51.4
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 3.0e-218 762.7 472 73.7
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 4.0e-218 762.3 625 58.9
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 3.4e-209 732.6 624 59.1
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 3.9e-205 719.2 735 48.8
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.5e-201 707.2 426 74.9
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 3.2e-199 699.5 434 73.0
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 1.7e-184 650.6 428 69.6
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 2.5e-180 636.7 478 63.8
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 3.3e-180 636.3 668 51.3
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 1.4e-178 630.9 537 57.4
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 3.8e-176 622.9 586 53.4
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 4.0e-170 602.8 913 38.0
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 1.9e-156 557.4 571 52.7
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 7.9e-142 508.8 778 39.7
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 1.6e-139 501.1 406 61.3
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 3.8e-136 490.0 316 70.6
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 2.1e-134 484.2 443 57.3
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 2.6e-132 477.2 273 79.9
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.8e-115 420.6 339 59.6
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 2.7e-110 404.1 430 51.9
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.4e-106 391.7 408 51.5
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 6.8e-101 372.9 400 53.0
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 1.1e-90 339.0 242 62.8
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 3.1e-85 320.9 827 31.2
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 4.0e-85 320.5 525 35.8
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 1.7e-72 278.5 202 64.4
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 4.3e-63 247.3 208 57.7
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 9.3e-58 229.6 137 75.2
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.3e-56 225.7 166 63.3
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 1.8e-48 198.7 104 82.7
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 1.3e-46 192.6 194 51.0
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 3.7e-46 191.0 99 84.8
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 5.1e-32 144.1 94 67.0
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 4.3e-31 141.0 155 45.8
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 3.2e-26 124.8 96 61.5
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 3.3e-23 114.8 119 43.7
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 4.3e-23 114.4 69 76.8
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 6.9e-21 107.1 84 58.3
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 3.8e-19 101.3 83 61.4
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 1.4e-18 99.4 95 56.8
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 1.6e-17 95.9 60 70.0
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 1.4e-16 92.8 71 54.9
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 2.3e-16 92.0 62 67.7
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 1.5e-12 79.3 44 81.8
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.7e-11 75.9 41 75.6
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 2.9e-11 75.1 59 59.3
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 8.5e-11 73.6 70 55.7
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.1e-10 73.2 40 75.0
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 8.0e-09 67.0 56 48.2
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 1.4e-08 66.2 55 49.1


User provided reference genes

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