Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 8.0e-146 520.4 261 100.0
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 5.0e-140 501.1 261 95.8
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 2.4e-89 332.8 262 63.0
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 1.1e-81 307.4 264 59.5
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 3.1e-81 305.8 254 61.8
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 2.6e-80 302.8 264 55.7
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 1.7e-79 300.1 261 54.8
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 2.5e-78 296.2 265 57.4
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 5.5e-78 295.0 267 59.9
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 5.5e-78 295.0 265 57.4
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 9.4e-78 294.3 261 63.2
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 1.6e-77 293.5 268 56.3
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 3.6e-77 292.4 264 57.2
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 4.6e-77 292.0 269 54.6
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 1.4e-76 290.4 265 57.0
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 1.4e-76 290.4 266 56.4
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 2.5e-75 286.2 269 56.5
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 2.5e-75 286.2 267 57.3
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 5.7e-75 285.0 268 57.8
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 9.7e-75 284.3 267 57.7
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 9.7e-75 284.3 268 56.3
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 4.8e-74 282.0 272 54.8
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 4.8e-74 282.0 270 54.8
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 8.2e-74 281.2 257 55.6
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 8.2e-74 281.2 264 55.3
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 1.8e-73 280.0 255 56.1
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 1.8e-73 280.0 263 56.3
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 3.1e-73 279.3 254 57.1
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 3.1e-73 279.3 255 56.1
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 2.6e-72 276.2 265 54.3
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 2.6e-72 276.2 266 56.4
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 2.6e-72 276.2 252 55.2
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.4e-72 275.8 267 55.1
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 3.4e-72 275.8 254 55.1
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 5.9e-72 275.0 243 58.4
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 1.3e-71 273.9 253 54.5
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 1.3e-71 273.9 267 55.1
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 1.7e-71 273.5 264 54.9
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 2.2e-71 273.1 267 53.2
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 2.2e-71 273.1 211 63.0
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 3.8e-71 272.3 260 53.8
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 8.5e-71 271.2 264 55.3
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 1.4e-70 270.4 274 50.7
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 1.9e-70 270.0 264 54.5
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 2.7e-69 266.2 267 54.3
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.6e-69 265.8 267 53.6
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 3.6e-69 265.8 264 54.2
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 4.7e-69 265.4 267 52.4
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 6.1e-69 265.0 272 50.4
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 7.9e-69 264.6 267 54.3
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 1.4e-68 263.8 261 53.6
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 1.4e-68 263.8 267 54.3
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 8.8e-68 261.2 267 54.7
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 8.8e-68 261.2 261 52.5
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 2.6e-67 259.6 267 53.2
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 2.6e-67 259.6 251 53.8
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 3.3e-67 259.2 240 55.4
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 3.3e-67 259.2 240 55.0
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 4.4e-67 258.8 247 53.0
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 4.4e-67 258.8 227 55.5
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 7.4e-67 258.1 245 52.7
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 7.4e-67 258.1 261 53.3
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 9.7e-67 257.7 209 60.3
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 1.7e-66 256.9 253 53.8
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 6.3e-66 255.0 269 50.6
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 6.3e-66 255.0 248 54.0
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.8e-65 253.4 231 53.2
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 2.4e-65 253.1 266 51.1
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.1e-65 252.3 265 52.5
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 5.3e-65 251.9 246 53.3
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 5.3e-65 251.9 262 52.7
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 2.0e-64 250.0 258 50.8
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 2.0e-64 250.0 260 51.9
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 4.5e-64 248.8 262 51.5
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 7.2e-62 241.5 233 54.9
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 1.2e-61 240.7 274 51.5
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 3.6e-61 239.2 261 46.4
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 8.0e-61 238.0 273 51.3
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 1.4e-60 237.3 266 47.7
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 1.8e-60 236.9 226 53.5
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.3e-60 236.5 251 52.2
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 3.0e-60 236.1 238 52.9
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 5.2e-60 235.3 201 58.2
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 8.8e-60 234.6 244 51.6
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 8.8e-60 234.6 264 47.3
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 1.5e-59 233.8 265 49.4
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 2.0e-59 233.4 203 58.1
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 2.6e-59 233.0 262 45.4
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 3.3e-59 232.6 219 54.8
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 3.3e-59 232.6 264 47.3
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 4.4e-59 232.3 265 47.9
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 5.7e-59 231.9 262 46.2
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 9.7e-59 231.1 263 46.4
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 9.7e-59 231.1 263 46.4
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 1.3e-58 230.7 260 47.7
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 2.2e-58 229.9 275 47.3
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 2.8e-58 229.6 264 48.1
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 4.8e-58 228.8 265 47.2
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 2.4e-57 226.5 243 51.9
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 3.1e-57 226.1 241 49.4
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 3.1e-57 226.1 263 47.9
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 3.1e-57 226.1 263 47.9
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 3.1e-57 226.1 263 47.9
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 3.1e-57 226.1 247 47.0
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 9.1e-57 224.6 217 53.0
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.0e-56 223.4 243 51.4
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 3.5e-56 222.6 236 47.5
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 4.5e-56 222.2 217 49.3
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 5.9e-56 221.9 192 56.2
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 1.3e-55 220.7 262 44.3
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 1.7e-55 220.3 285 43.2
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 2.2e-55 219.9 263 46.0
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 2.2e-55 219.9 263 46.0
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 2.2e-55 219.9 264 47.7
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 2.9e-55 219.5 264 45.1
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 1.1e-54 217.6 249 44.6
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 1.1e-54 217.6 250 48.4
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.1e-54 217.6 263 44.1
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 3.2e-54 216.1 268 45.5
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 5.5e-54 215.3 232 48.7
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 1.2e-53 214.2 253 47.8
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 2.1e-53 213.4 211 49.8
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 3.6e-53 212.6 179 57.0
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 3.6e-53 212.6 213 50.7
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 1.0e-52 211.1 249 43.8
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 1.0e-52 211.1 299 41.8
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 1.0e-52 211.1 265 46.0
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.4e-52 210.7 279 43.4
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 1.8e-52 210.3 275 43.6
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 8.8e-52 208.0 216 51.9
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 7.5e-51 204.9 178 54.5
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 6.3e-50 201.8 251 45.0
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 8.3e-50 201.4 210 49.5
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.4e-49 200.7 263 42.6
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 1.8e-49 200.3 277 42.6
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 3.1e-49 199.5 220 45.9
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 4.1e-49 199.1 224 49.6
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 2.0e-48 196.8 180 55.0
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 4.5e-48 195.7 266 41.7
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 1.0e-47 194.5 271 41.3
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.3e-47 194.1 211 45.5
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 2.9e-47 193.0 170 54.1
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 3.6e-45 186.0 262 40.5
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.6e-45 186.0 266 40.2
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 3.0e-44 183.0 179 52.0
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 3.7e-42 176.0 235 42.6
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 1.8e-41 173.7 180 48.3
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 2.7e-40 169.9 240 42.1
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 1.7e-39 167.2 245 40.0
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 5.0e-39 165.6 81 96.3
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 3.3e-38 162.9 158 49.4
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.8e-36 157.1 139 58.3
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 3.0e-36 156.4 221 37.6
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 7.5e-35 151.8 302 32.1
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 1.1e-33 147.9 219 42.0
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 1.4e-33 147.5 130 58.5
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 9.2e-33 144.8 179 45.3
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 1.6e-32 144.1 171 43.3
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 2.0e-32 143.7 319 31.0
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 8.6e-31 138.3 210 40.0
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 4.3e-30 136.0 231 37.7
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 4.3e-30 136.0 240 37.1
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 1.4e-28 131.0 217 36.4
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 4.4e-27 125.9 251 34.3
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 1.9e-25 120.6 117 53.8
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.2e-25 119.8 195 39.5
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 1.2e-24 117.9 81 65.4
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 3.5e-24 116.3 165 41.8
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 3.0e-23 113.2 111 53.2
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 1.9e-22 110.5 260 30.8
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 1.6e-21 107.5 261 30.3
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 4.9e-18 95.9 74 56.8
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 6.4e-18 95.5 141 40.4
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 2.3e-15 87.0 107 42.1
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 3.0e-15 86.7 163 35.0
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 3.3e-14 83.2 132 39.4
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 3.6e-13 79.7 107 46.7
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 3.1e-12 76.6 46 73.9
Cfa015703 Carpinus fangiana HOM05D003612 ORTHO05D004323 1.5e-11 74.3 53 66.0
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 3.4e-11 73.2 74 54.1
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 3.4e-11 73.2 87 52.9
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 9.9e-11 71.6 130 38.5
Lj1A1127T48 Lonicera japonica HOM05D003612 ORTHO05D004323 1.3e-07 61.2 41 65.9
CsaV3_3G040730 Cucumis sativus L. HOM05D003612 ORTHO05D004323 5.1e-07 59.3 66 51.5
Actinidia09310 Actinidia chinensis HOM05D003612 ORTHO05D004323 6.6e-07 58.9 44 61.4
GSVIVG01033244001 Vitis vinifera HOM05D003612 ORTHO05D004323 6.6e-07 58.9 57 54.4


User provided reference genes

Program Settings