Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 3563.5 1852 100.0
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2576.6 1909 72.9
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2538.1 1897 72.0
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2537.7 1904 72.1
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 2531.5 1873 72.5
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2528.4 1901 71.4
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2527.3 1894 71.2
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2516.1 1895 71.5
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2506.1 1894 71.6
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 2501.5 1892 71.2
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 2495.7 1895 70.9
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2492.6 1886 70.0
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 2488.8 1914 69.5
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2480.3 1896 71.3
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2478.0 1887 70.5
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 2475.3 1899 71.2
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2469.9 1886 69.7
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2465.6 1879 71.2
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 2452.2 1888 69.5
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2437.1 1883 69.2
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 2435.6 1895 70.0
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2420.6 1891 68.8
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 2417.5 1893 69.7
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2416.7 1905 68.8
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 2412.9 1883 68.9
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 2410.6 2104 63.9
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 2408.6 1899 68.6
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2404.4 1927 67.9
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 2400.9 1895 69.6
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 2390.5 1890 68.7
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2375.9 1991 66.8
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 2368.6 1880 68.9
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 2367.0 1884 68.1
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2364.3 1894 67.9
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 2362.4 1891 67.3
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2356.6 1889 68.0
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2343.9 1893 67.5
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 2329.7 1879 67.3
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 2313.1 1941 65.5
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2310.4 1897 67.3
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 2307.7 1929 66.7
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 2307.3 1882 66.8
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 2306.2 1876 67.0
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 2303.5 1725 72.1
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2296.2 2229 59.2
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 2293.8 2097 62.3
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 2289.6 1890 67.0
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2278.8 1893 66.9
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 2266.5 1896 65.5
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2264.6 1888 65.8
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 2263.4 1712 71.3
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2256.9 1859 67.3
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 2253.8 1887 66.0
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 2248.0 1890 66.0
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2243.8 1872 65.4
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 2243.8 1863 66.7
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 2243.4 1864 65.8
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2225.3 1901 65.8
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2221.0 1900 65.4
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 2219.5 1897 65.3
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 2216.0 1731 70.0
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2213.0 1890 64.7
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2203.3 1774 68.2
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 2199.9 1877 65.2
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 2183.3 1874 64.5
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 2169.8 1902 64.4
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2169.0 1900 64.5
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2167.5 1879 64.6
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2154.8 1905 64.1
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2153.3 1850 64.6
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2151.7 1906 64.1
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 2148.6 1882 64.3
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 2141.3 1984 62.2
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 2137.1 1972 60.6
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 2132.8 1879 64.0
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 2132.5 1874 64.1
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 2130.9 1883 63.3
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2128.6 1879 63.8
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2125.9 1879 63.9
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2124.7 1914 63.0
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 2113.2 1893 62.8
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 2112.0 1879 63.4
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2095.9 1781 65.2
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 2092.8 1923 62.2
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 2082.8 1849 63.2
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 1991.9 1882 60.6
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 1975.7 1352 74.7
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1916.7 1508 69.8
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1877.4 1502 69.2
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1855.1 1853 57.3
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1833.5 1996 55.3
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1768.1 1977 53.0
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1683.7 1832 54.1
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1665.2 1873 53.1
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1604.7 1862 51.8
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1492.6 1206 69.5
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1455.3 1261 65.0
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1427.2 989 74.9
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1418.3 1285 63.1
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1414.1 1081 70.3
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1322.8 1468 54.6
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1311.6 1208 62.9
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 0.0e+00 1191.4 854 71.8
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 0.0e+00 1148.7 939 66.3
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 0.0e+00 1141.7 1092 62.7
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 3.3e-302 1042.7 1414 43.8
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.2e-291 1007.7 1133 54.2
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 9.7e-278 961.4 677 72.7
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 4.8e-277 959.1 683 73.9
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 6.3e-237 825.9 865 58.5
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 2.2e-221 774.2 1112 45.5
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 6.4e-221 772.7 1323 37.5
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 3.9e-218 763.5 968 50.4
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 1.5e-209 734.9 446 85.2
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 6.9e-159 566.6 371 75.5
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 3.6e-155 554.3 1167 34.0
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 5.7e-145 520.4 369 71.0
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 3.2e-140 504.6 363 70.8
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 2.2e-133 481.9 370 67.0
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 3.6e-107 394.8 498 48.8
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 6.8e-106 390.6 287 69.3
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 3.4e-97 361.7 540 47.0
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 1.6e-94 352.8 519 48.4
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 1.5e-92 346.3 294 63.3
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 9.5e-92 343.6 214 77.1
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 3.6e-91 341.7 1390 25.2
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 5.6e-84 317.8 198 79.3
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.2e-83 316.6 237 70.5
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.7e-80 306.2 260 64.6
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 2.8e-75 288.9 263 58.6
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 8.1e-67 260.8 1757 23.7
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 2.7e-62 245.7 226 61.1
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 5.6e-60 238.0 173 71.1
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 9.0e-58 230.7 507 34.5
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 3.8e-56 225.3 245 55.5
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 2.7e-54 219.2 190 60.5
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.5e-52 212.6 237 51.9
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 4.3e-52 211.8 274 49.3
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.7e-48 199.9 175 62.3
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 7.2e-47 194.5 165 58.8
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 4.8e-43 181.8 408 39.0
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 6.9e-42 177.9 221 50.2
SHI04405 Sapria himalayana HOM05D003986 ORTHO05D004916 3.9e-37 162.2 106 73.6
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 5.7e-36 158.3 89 83.1
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 3.5e-33 149.1 120 64.2
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 2.3e-29 136.3 108 72.2
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 4.4e-28 132.1 122 60.7
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 3.7e-27 129.0 75 88.0
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 2.4e-26 126.3 101 65.3
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 5.3e-26 125.2 105 66.7
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 7.7e-25 121.3 69 89.9
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 1.0e-21 110.9 75 76.0
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 1.5e-20 107.1 60 86.7
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 6.3e-19 101.7 103 59.2
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 2.4e-18 99.8 128 49.2
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 9.1e-18 97.8 54 90.7
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 9.1e-18 97.8 54 90.7
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 4.5e-17 95.5 54 88.9
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 5.9e-17 95.1 90 54.4
TPR.G39728 Trifolium pratense HOM05D003986 ORTHO05D004916 5.0e-16 92.0 68 64.7
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 2.3e-13 83.2 83 50.6
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 4.0e-13 82.4 41 92.7
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 2.6e-12 79.7 36 97.2
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 3.4e-12 79.3 65 60.0
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 3.4e-12 79.3 50 86.0
Atru.chr2.736 Acer truncatum HOM05D003986 ORTHO05D004916 3.7e-11 75.9 99 47.5
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 6.3e-11 75.1 53 69.8
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 4.1e-10 72.4 78 47.4
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 1.2e-09 70.9 52 67.3
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 2.0e-09 70.1 73 56.2
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 5.0e-08 65.5 32 87.5
TPR.G21790 Trifolium pratense HOM05D003986 ORTHO05D411817 7.2e-07 61.6 50 62.0
Sabra18G0053300 Salix brachista HOM05D003986 ORTHO05D004916 9.5e-07 61.2 55 60.0


User provided reference genes

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